HEADER ANTIVIRAL PROTEIN, IMMUNE SYSTEM 23-FEB-22 7Z0Y TITLE THSC20.HVTR04 FAB BOUND TO SARS-COV-2 RECEPTOR BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THSC20.HVTR04 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUE 1 HAS BEEN MODELLED AS A CYCLIZED PYROGLUTAMIC COMPND 6 ACID. THE LAST 7 AMINO ACIDS GLEVLFQ ARE A PROTEASE SEQUENCE USED TO COMPND 7 CLEAVE OFF PURIFICATION TAGS, BUT MAY BE LISTED AS 'EXPRESSION TAG'.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: THSC20.HVTR04 FAB LIGHT CHAIN; COMPND 10 CHAIN: L; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: POSITION 1 HAS BEEN MODELLED AS A CYCLIZED COMPND 13 PYROGLUTAMIC ACID.; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SPIKE PROTEIN S1; COMPND 16 CHAIN: R; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: CHAIN R HAS AN N-LINKED GLYCAN AT POSITION N343 (11TH COMPND 19 RESOLVED RESIDUE) - NAG-NAG-FUC. THE LAST 7 AMINO ACIDS GLEVLFQ IS A COMPND 20 PROTEASE CLEAVAGE SITE TO REMOVE THE PURIFICATION TAGS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 TISSUE: BLOOD; SOURCE 5 CELL: B CELL; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 TISSUE: BLOOD; SOURCE 15 CELL: B CELL; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 23 2; SOURCE 24 ORGANISM_TAXID: 2697049; SOURCE 25 VARIANT: NONE; SOURCE 26 TISSUE: BLOOD; SOURCE 27 CELL: B CELL; SOURCE 28 GENE: S, 2; SOURCE 29 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 32 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 33 EXPRESSION_SYSTEM_PLASMID: PCDNA3.4 KEYWDS NEUTRALIZING ANTIBODY, SARS-COV-2, SPIKE, RBD, ANTIVIRAL PROTEIN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.K.WIBMER REVDAT 3 01-MAY-24 7Z0Y 1 JRNL REVDAT 2 11-MAY-22 7Z0Y 1 SOURCE JRNL REVDAT 1 13-APR-22 7Z0Y 0 JRNL AUTH N.HINGANKAR,S.DESHPANDE,P.DAS,Z.A.RIZVI,C.K.WIBMER, JRNL AUTH 2 P.MASHILO,M.Y.ANSARI,A.BURNS,S.BARMAN,F.ZHAO,S.MUKHERJEE, JRNL AUTH 3 J.L.TORRES,S.CHATTOPADHYAY,F.MEHDI,J.SUTAR,D.K.RATHORE, JRNL AUTH 4 K.PARGAI,J.SINGH,S.SONAR,K.JAKHAR,J.DANDOTIYA, JRNL AUTH 5 S.BHATTACHARYYA,S.MANI,S.SAMAL,S.SINGH,P.KSHETRAPAL, JRNL AUTH 6 R.THIRUVENGADAM,G.BATRA,G.MEDIGESHI,A.B.WARD,S.BHATNAGAR, JRNL AUTH 7 A.AWASTHI,D.SOK,J.BHATTACHARYA JRNL TITL A COMBINATION OF POTENTLY NEUTRALIZING MONOCLONAL ANTIBODIES JRNL TITL 2 ISOLATED FROM AN INDIAN CONVALESCENT DONOR PROTECTS AGAINST JRNL TITL 3 THE SARS-COV-2 DELTA VARIANT. JRNL REF PLOS PATHOG. V. 18 10465 2022 JRNL REFN ESSN 1553-7374 JRNL PMID 35482816 JRNL DOI 10.1371/JOURNAL.PPAT.1010465 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.HINGANKAR,S.DESHPANDE,P.DAS,Z.A.RIZVI,A.BURNS,S.BARMAN, REMARK 1 AUTH 2 F.ZHAO,M.Y.ANSARI,S.MUKHERJEE,J.L.TORRES,S.CHATTOPADHYAY, REMARK 1 AUTH 3 F.MEHDI,J.SUTAR,D.K.RATHORE,K.PARGAI,J.SINGH,S.SONAR, REMARK 1 AUTH 4 K.JAKHAR,S.BHATTACHARYYA,S.MANI,S.SINGH,J.DANDOTIYA, REMARK 1 AUTH 5 P.KSHETRAPAL,R.THIRUVENGADAM,G.BATRA,G.MEDIGESHI,A.B.WARD, REMARK 1 AUTH 6 S.BHATNAGAR,A.AWASTHI,D.SOK,J.BHATTACHARYA REMARK 1 TITL A COMBINATION OF POTENTLY NEUTRALIZING MONOCLONAL ANTIBODIES REMARK 1 TITL 2 ISOLATED FROM AN INDIAN CONVALESCENT DONOR PROTECTS AGAINST REMARK 1 TITL 3 THE SARS-COV-2 DELTA VARIANT REMARK 1 REF BIORXIV 2021 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2021.12.25.474152 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.5 REMARK 3 NUMBER OF REFLECTIONS : 23082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 5.8800 0.98 3662 171 0.2406 0.2614 REMARK 3 2 5.8800 - 4.6700 1.00 3487 210 0.1853 0.2021 REMARK 3 3 4.6700 - 4.0800 1.00 3495 174 0.1699 0.1888 REMARK 3 4 4.0800 - 3.7000 1.00 3471 184 0.2078 0.2625 REMARK 3 5 3.7000 - 3.4400 0.99 3416 181 0.2539 0.2774 REMARK 3 6 3.4400 - 3.2400 0.65 2239 117 0.2764 0.2736 REMARK 3 7 3.2400 - 3.0700 0.38 1311 72 0.2907 0.3281 REMARK 3 8 3.0700 - 2.9500 0.25 860 32 0.3589 0.3845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6551 -18.6754 18.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.3284 REMARK 3 T33: 0.3067 T12: 0.1284 REMARK 3 T13: -0.0638 T23: 0.0669 REMARK 3 L TENSOR REMARK 3 L11: 1.7893 L22: 3.8264 REMARK 3 L33: 3.2341 L12: -0.7132 REMARK 3 L13: 0.5196 L23: -0.3415 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: 0.1625 S13: 0.1596 REMARK 3 S21: 0.6399 S22: 0.0843 S23: -0.3431 REMARK 3 S31: -0.4233 S32: 0.1911 S33: 0.0265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 114 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7823 -48.2876 47.2148 REMARK 3 T TENSOR REMARK 3 T11: 0.6352 T22: 0.5923 REMARK 3 T33: 0.4021 T12: 0.1920 REMARK 3 T13: 0.0903 T23: 0.1144 REMARK 3 L TENSOR REMARK 3 L11: 1.5024 L22: 4.1101 REMARK 3 L33: 2.0805 L12: 0.2020 REMARK 3 L13: 0.4493 L23: -0.6405 REMARK 3 S TENSOR REMARK 3 S11: 0.0276 S12: -0.2970 S13: -0.1182 REMARK 3 S21: 0.2347 S22: -0.0385 S23: 0.3046 REMARK 3 S31: -0.8099 S32: -0.4749 S33: -0.0172 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3490 -36.4348 8.5286 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.4097 REMARK 3 T33: 0.2960 T12: 0.0441 REMARK 3 T13: -0.0474 T23: 0.0448 REMARK 3 L TENSOR REMARK 3 L11: 2.2879 L22: 5.1752 REMARK 3 L33: 3.0753 L12: 0.2580 REMARK 3 L13: -0.1283 L23: 0.2295 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: 0.1714 S13: -0.2663 REMARK 3 S21: -0.1933 S22: 0.1330 S23: 0.3672 REMARK 3 S31: 0.2897 S32: -0.1970 S33: -0.2334 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 109 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8092 -47.7685 36.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.4389 T22: 0.9792 REMARK 3 T33: 0.7018 T12: 0.2449 REMARK 3 T13: -0.0225 T23: 0.2526 REMARK 3 L TENSOR REMARK 3 L11: 1.4988 L22: 2.2104 REMARK 3 L33: 1.4257 L12: -0.0032 REMARK 3 L13: -0.5880 L23: -0.2782 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: -0.0495 S13: 0.2497 REMARK 3 S21: -0.0408 S22: 0.2408 S23: 0.6371 REMARK 3 S31: -0.5982 S32: -1.0284 S33: -0.1646 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 701 THROUGH 731 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2820 -7.7020 -18.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.4116 REMARK 3 T33: 0.3281 T12: 0.0249 REMARK 3 T13: -0.0406 T23: 0.1399 REMARK 3 L TENSOR REMARK 3 L11: 1.3621 L22: 3.1184 REMARK 3 L33: 3.8172 L12: -1.1557 REMARK 3 L13: -1.0799 L23: 1.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.1452 S13: 0.0760 REMARK 3 S21: -0.4164 S22: -0.2513 S23: -0.2006 REMARK 3 S31: -0.0863 S32: 0.3227 S33: 0.1620 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Z0Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292121347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23099 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05634 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34010 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 12%(V/V) REMARK 280 ISOPROPANOL, 0.1M IMIDAZOLE HCL PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.72700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.07850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.07850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.59050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.07850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.07850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.86350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.07850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.07850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.59050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.07850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.07850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.86350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.72700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, R, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH R 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 LEU H 218 REMARK 465 GLU H 219 REMARK 465 VAL H 220 REMARK 465 LEU H 221 REMARK 465 PHE H 222 REMARK 465 GLN H 223 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLN R 330 REMARK 465 ASN R 331 REMARK 465 ILE R 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 210 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 94 -153.19 -150.23 REMARK 500 ASP H 144 71.29 57.54 REMARK 500 THR H 160 -49.86 -134.15 REMARK 500 ASP L 27B -91.32 -122.44 REMARK 500 VAL L 51 -55.24 76.67 REMARK 500 ALA L 92 -84.69 -102.77 REMARK 500 ASN L 128 17.53 58.87 REMARK 500 LYS L 156 -12.68 -144.11 REMARK 500 GLU L 198 -121.26 43.26 REMARK 500 ALA R 352 44.05 -102.62 REMARK 500 TYR R 380 -65.72 -100.16 REMARK 500 PHE R 400 -173.41 -175.00 REMARK 500 ASN R 422 -53.75 -134.32 REMARK 500 ASP R 428 40.19 -90.05 REMARK 500 ASN R 487 26.41 46.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Z0Y H 1 223 PDB 7Z0Y 7Z0Y 1 223 DBREF 7Z0Y L 1 212 PDB 7Z0Y 7Z0Y 1 212 DBREF 7Z0Y R 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 SEQADV 7Z0Y GLN R 330 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y GLY R 528 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y LEU R 529 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y GLU R 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y VAL R 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y LEU R 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y PHE R 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7Z0Y GLN R 534 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 233 PCA VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 233 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 233 PHE THR PHE SER ASN TYR ALA ILE HIS TRP VAL ARG GLN SEQRES 4 H 233 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL VAL SER SEQRES 5 H 233 TYR ASP GLY SER ASN LYS TYR TYR ALA GLU SER VAL LYS SEQRES 6 H 233 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 233 LEU SER LEU GLN MET ILE SER LEU ARG PRO GLU ASP THR SEQRES 8 H 233 ALA VAL TYR TYR CYS ALA SER VAL ALA ASP THR ALA MET SEQRES 9 H 233 VAL PRO GLU TRP TYR PHE ASP LEU TRP GLY GLN GLY THR SEQRES 10 H 233 MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 233 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 233 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 233 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 233 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 233 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 233 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 233 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 233 GLU PRO LYS SER CYS GLY LEU GLU VAL LEU PHE GLN SEQRES 1 L 214 PCA SER VAL LEU THR GLN PRO ARG SER VAL SER GLY SER SEQRES 2 L 214 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 L 214 SER ASP VAL GLY ALA TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 214 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP SEQRES 5 L 214 VAL SER ALA ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 214 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 214 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 L 214 SER TYR ALA GLY SER TRP VAL PHE GLY GLY GLY THR LYS SEQRES 9 L 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 L 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 L 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 L 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 L 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 L 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 L 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 L 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 L 214 ALA PRO THR GLU CYS SER SEQRES 1 R 205 GLN ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE SEQRES 2 R 205 ASN ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG SEQRES 3 R 205 LYS ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU SEQRES 4 R 205 TYR ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY SEQRES 5 R 205 VAL SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN SEQRES 6 R 205 VAL TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL SEQRES 7 R 205 ARG GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP SEQRES 8 R 205 TYR ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL SEQRES 9 R 205 ILE ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY SEQRES 10 R 205 GLY ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER SEQRES 11 R 205 ASN LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE SEQRES 12 R 205 TYR GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY SEQRES 13 R 205 PHE ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN SEQRES 14 R 205 PRO THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL SEQRES 15 R 205 VAL LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL SEQRES 16 R 205 CYS GLY PRO GLY LEU GLU VAL LEU PHE GLN HET PCA H 1 14 HET PCA L 1 13 HET NAG A 1 21 HET NAG A 2 22 HET FUC A 3 18 HET SO4 L 301 5 HET SO4 R 601 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *65(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 LEU H 189 5 3 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLN L 79 GLU L 83 5 5 HELIX 7 AA7 SER L 121 ALA L 127 1 7 HELIX 8 AA8 THR L 181 HIS L 188 1 8 HELIX 9 AA9 PHE R 338 ASN R 343 1 6 HELIX 10 AB1 ASP R 364 ALA R 372 1 9 HELIX 11 AB2 SER R 383 ASN R 388 1 6 HELIX 12 AB3 ASP R 405 ILE R 410 5 6 HELIX 13 AB4 GLY R 416 ASN R 422 1 7 HELIX 14 AB5 SER R 438 SER R 443 1 6 HELIX 15 AB6 GLY R 502 TYR R 505 5 4 HELIX 16 AB7 PRO R 527 GLN R 534 5 8 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 SER H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 VAL H 51 -1 O ALA H 49 N TRP H 36 SHEET 6 AA2 6 LYS H 57 TYR H 59 -1 O TYR H 58 N VAL H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 4 ALA H 88 SER H 94 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 LEU H 102 TRP H 103 -1 O LEU H 102 N SER H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O LYS H 209 N CYS H 196 SHEET 1 AA7 5 SER L 9 GLY L 13 0 SHEET 2 AA7 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA7 5 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA7 5 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA7 5 LYS L 45 ILE L 48 -1 O MET L 47 N TRP L 35 SHEET 1 AA8 4 SER L 9 GLY L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA8 4 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AA9 3 VAL L 19 THR L 24 0 SHEET 2 AA9 3 THR L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB1 4 TYR L 172 LEU L 180 -1 O TYR L 172 N PHE L 139 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 130 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB2 4 TYR L 172 LEU L 180 -1 O TYR L 172 N PHE L 139 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 VAL L 155 0 SHEET 2 AB3 4 VAL L 144 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O THR L 196 N THR L 145 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 AB4 5 ASN R 354 ILE R 358 0 SHEET 2 AB4 5 ASN R 394 ARG R 403 -1 O ALA R 397 N LYS R 356 SHEET 3 AB4 5 PRO R 507 GLU R 516 -1 O VAL R 512 N ASP R 398 SHEET 4 AB4 5 GLY R 431 ASN R 437 -1 N ILE R 434 O VAL R 511 SHEET 5 AB4 5 THR R 376 CYS R 379 -1 N LYS R 378 O VAL R 433 SHEET 1 AB5 3 CYS R 361 VAL R 362 0 SHEET 2 AB5 3 VAL R 524 CYS R 525 1 O CYS R 525 N CYS R 361 SHEET 3 AB5 3 CYS R 391 PHE R 392 -1 N PHE R 392 O VAL R 524 SHEET 1 AB6 2 LEU R 452 ARG R 454 0 SHEET 2 AB6 2 LEU R 492 SER R 494 -1 O GLN R 493 N TYR R 453 SHEET 1 AB7 2 TYR R 473 GLN R 474 0 SHEET 2 AB7 2 CYS R 488 TYR R 489 -1 O TYR R 489 N TYR R 473 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.03 SSBOND 5 CYS R 336 CYS R 361 1555 1555 2.04 SSBOND 6 CYS R 379 CYS R 432 1555 1555 2.04 SSBOND 7 CYS R 391 CYS R 525 1555 1555 2.04 SSBOND 8 CYS R 480 CYS R 488 1555 1555 2.04 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 LINK C PCA L 1 N SER L 2 1555 1555 1.33 LINK ND2 ASN R 343 C1 NAG A 1 1555 1555 1.43 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O6 NAG A 1 C1 FUC A 3 1555 1555 1.44 CISPEP 1 PHE H 146 PRO H 147 0 -5.85 CISPEP 2 GLU H 148 PRO H 149 0 -5.44 CISPEP 3 TYR L 140 PRO L 141 0 1.96 CRYST1 126.157 126.157 167.454 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007927 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005972 0.00000 HETATM 1 N PCA H 1 27.911 -25.282 6.967 1.00113.60 N ANISOU 1 N PCA H 1 10828 16653 15683 1310 409 524 N HETATM 2 CA PCA H 1 27.015 -25.778 7.990 1.00 98.96 C ANISOU 2 CA PCA H 1 9158 14606 13836 1315 146 472 C HETATM 3 CB PCA H 1 27.991 -26.287 9.069 1.00103.65 C ANISOU 3 CB PCA H 1 9579 15143 14659 1337 -70 420 C HETATM 4 CG PCA H 1 29.232 -26.639 8.266 1.00118.19 C ANISOU 4 CG PCA H 1 11129 17140 16638 1404 88 400 C HETATM 5 CD PCA H 1 29.149 -25.765 7.043 1.00121.56 C ANISOU 5 CD PCA H 1 11553 17720 16915 1361 385 479 C HETATM 6 OE PCA H 1 30.060 -25.526 6.243 1.00118.25 O ANISOU 6 OE PCA H 1 10912 17462 16557 1376 584 505 O HETATM 7 C PCA H 1 26.100 -24.690 8.510 1.00 82.79 C ANISOU 7 C PCA H 1 7230 12516 11711 1150 78 584 C HETATM 8 O PCA H 1 26.490 -23.993 9.425 1.00 72.16 O ANISOU 8 O PCA H 1 5768 11151 10498 1002 -75 664 O HETATM 9 H PCA H 1 27.611 -24.620 6.258 1.00137.32 H HETATM 10 HA PCA H 1 26.431 -26.610 7.599 1.00119.75 H HETATM 11 HB2 PCA H 1 27.593 -27.163 9.578 1.00125.38 H HETATM 12 HB3 PCA H 1 28.213 -25.517 9.806 1.00125.38 H HETATM 13 HG2 PCA H 1 29.232 -27.690 7.984 1.00142.83 H HETATM 14 HG3 PCA H 1 30.139 -26.423 8.829 1.00142.83 H