HEADER METAL BINDING PROTEIN 02-MAR-22 7Z3G TITLE CRYSTAL STRUCTURE OF THE CUPREDOXIN ACOP FROM ACIDITHIOBACILLUS TITLE 2 FERROOXIDANS, H166A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACOP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDITHIOBACILLUS FERROOXIDANS; SOURCE 3 ORGANISM_TAXID: 920; SOURCE 4 GENE: DN052_11965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CUPREDOXIN, COPPER-BINDING, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LEONE,G.SCIARA,M.ILBERT REVDAT 2 28-FEB-24 7Z3G 1 JRNL REVDAT 1 13-SEP-23 7Z3G 0 JRNL AUTH M.ROGER,P.LEONE,N.J.BLACKBURN,S.HORRELL,T.M.CHICANO,F.BIASO, JRNL AUTH 2 M.T.GIUDICI-ORTICONI,L.A.ABRIATA,G.L.HURA,M.A.HOUGH, JRNL AUTH 3 G.SCIARA,M.ILBERT JRNL TITL BEYOND THE COUPLED DISTORTION MODEL: STRUCTURAL ANALYSIS OF JRNL TITL 2 THE SINGLE DOMAIN CUPREDOXIN ACOP, A GREEN MONONUCLEAR JRNL TITL 3 COPPER CENTRE WITH ORIGINAL FEATURES. JRNL REF DALTON TRANS V. 53 1794 2024 JRNL REFN ESSN 1477-9234 JRNL PMID 38170898 JRNL DOI 10.1039/D3DT03372D REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 17368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1254 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2182 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1962 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2964 ; 1.840 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4525 ; 1.466 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 7.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;29.878 ;23.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;13.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2511 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 535 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 43 180 B 43 180 3985 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): -28.9156 11.5386 -9.2492 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0279 REMARK 3 T33: 0.1046 T12: 0.0121 REMARK 3 T13: 0.0080 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.4463 L22: 0.5566 REMARK 3 L33: 2.2021 L12: 0.1647 REMARK 3 L13: -0.1666 L23: 0.0554 REMARK 3 S TENSOR REMARK 3 S11: -0.0683 S12: -0.1007 S13: -0.0207 REMARK 3 S21: 0.0066 S22: 0.0661 S23: -0.0144 REMARK 3 S31: 0.0869 S32: 0.1104 S33: 0.0022 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 180 REMARK 3 ORIGIN FOR THE GROUP (A): -56.8846 -1.7871 -11.5074 REMARK 3 T TENSOR REMARK 3 T11: 0.1565 T22: 0.0604 REMARK 3 T33: 0.1360 T12: -0.0358 REMARK 3 T13: -0.0681 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.0470 L22: 3.0557 REMARK 3 L33: 2.6491 L12: -0.5210 REMARK 3 L13: 0.4159 L23: -0.6435 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: 0.0703 S13: -0.1514 REMARK 3 S21: -0.5094 S22: -0.1166 S23: 0.3732 REMARK 3 S31: 0.5261 S32: -0.3008 S33: -0.0383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7Z3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7Z3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM POTASSIUM ACETATE, 10MM REMARK 280 POTASSIUM CHLORIDE, 50MM MES, 50MM TRIS, 50MM HEPES, 34-44% REMARK 280 PEG3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.93500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.95650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.95650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.46750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.95650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.95650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.40250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.95650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.95650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.46750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.95650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.95650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.40250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.93500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 SER A 14 REMARK 465 TYR A 15 REMARK 465 TYR A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 THR A 26 REMARK 465 SER A 27 REMARK 465 LEU A 28 REMARK 465 TYR A 29 REMARK 465 LYS A 30 REMARK 465 LYS A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 ASN A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 GLN A 39 REMARK 465 VAL A 40 REMARK 465 ILE A 41 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 MET B 13 REMARK 465 SER B 14 REMARK 465 TYR B 15 REMARK 465 TYR B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 HIS B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 LEU B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 THR B 26 REMARK 465 SER B 27 REMARK 465 LEU B 28 REMARK 465 TYR B 29 REMARK 465 LYS B 30 REMARK 465 LYS B 31 REMARK 465 ALA B 32 REMARK 465 GLY B 33 REMARK 465 SER B 34 REMARK 465 ASN B 35 REMARK 465 PRO B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 GLN B 39 REMARK 465 VAL B 40 REMARK 465 ILE B 41 REMARK 465 ASN B 42 REMARK 465 ARG B 96 REMARK 465 ASP B 97 REMARK 465 ASN B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 PRO B 101 REMARK 465 LYS B 102 REMARK 465 SER B 103 REMARK 465 GLN B 104 REMARK 465 ALA B 105 REMARK 465 GLN B 181 REMARK 465 GLY B 182 REMARK 465 SER B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 THR B 163 CB OG1 CG2 REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 76 CD - NE - CZ ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASN B 53 CA - C - N ANGL. DEV. = -13.3 DEGREES REMARK 500 TYR B 54 C - N - CA ANGL. DEV. = 21.7 DEGREES REMARK 500 TYR B 54 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 92 81.43 69.16 REMARK 500 GLN A 162 39.10 72.77 REMARK 500 TYR B 54 43.21 110.85 REMARK 500 THR B 92 93.42 83.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 53 TYR B 54 140.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN B 53 14.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 ND1 REMARK 620 2 CYS A 159 SG 159.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 85 ND1 REMARK 620 2 CYS B 159 SG 157.6 REMARK 620 N 1 DBREF1 7Z3G A 35 183 UNP A0A2W1KFF4_ACIFR DBREF2 7Z3G A A0A2W1KFF4 35 183 DBREF1 7Z3G B 35 183 UNP A0A2W1KFF4_ACIFR DBREF2 7Z3G B A0A2W1KFF4 35 183 SEQADV 7Z3G MET A 13 UNP A0A2W1KFF INITIATING METHIONINE SEQADV 7Z3G SER A 14 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR A 15 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR A 16 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 17 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 18 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 19 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 20 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 21 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS A 22 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LEU A 23 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G GLU A 24 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER A 25 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G THR A 26 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER A 27 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LEU A 28 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR A 29 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LYS A 30 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LYS A 31 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G ALA A 32 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G GLY A 33 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER A 34 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G ALA A 166 UNP A0A2W1KFF HIS 166 ENGINEERED MUTATION SEQADV 7Z3G MET B 13 UNP A0A2W1KFF INITIATING METHIONINE SEQADV 7Z3G SER B 14 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR B 15 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR B 16 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 17 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 18 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 19 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 20 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 21 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G HIS B 22 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LEU B 23 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G GLU B 24 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER B 25 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G THR B 26 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER B 27 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LEU B 28 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G TYR B 29 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LYS B 30 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G LYS B 31 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G ALA B 32 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G GLY B 33 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G SER B 34 UNP A0A2W1KFF EXPRESSION TAG SEQADV 7Z3G ALA B 166 UNP A0A2W1KFF HIS 166 ENGINEERED MUTATION SEQRES 1 A 171 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 171 THR SER LEU TYR LYS LYS ALA GLY SER ASN PRO SER GLY SEQRES 3 A 171 GLN VAL ILE ASN GLY VAL HIS HIS TYR THR ILE ASP GLU SEQRES 4 A 171 PHE ASN TYR TYR TYR LYS PRO ASP ARG MET THR TRP HIS SEQRES 5 A 171 VAL GLY GLU LYS VAL GLU LEU THR ILE ASP ASN ARG SER SEQRES 6 A 171 GLN SER ALA PRO PRO ILE ALA HIS GLN PHE SER ILE GLY SEQRES 7 A 171 ARG THR LEU VAL SER ARG ASP ASN GLY PHE PRO LYS SER SEQRES 8 A 171 GLN ALA ILE ALA VAL GLY TRP LYS ASP ASN PHE PHE ASP SEQRES 9 A 171 GLY VAL PRO ILE THR SER GLY GLY GLN THR GLY PRO VAL SEQRES 10 A 171 PRO ALA PHE SER VAL SER LEU ASN GLY GLY GLN LYS TYR SEQRES 11 A 171 THR PHE SER PHE VAL VAL PRO ASN LYS PRO GLY LYS TRP SEQRES 12 A 171 GLU TYR GLY CYS PHE LEU GLN THR GLY GLN ALA PHE MET SEQRES 13 A 171 ASN GLY MET HIS GLY ILE LEU ASP ILE LEU PRO ALA GLN SEQRES 14 A 171 GLY SER SEQRES 1 B 171 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 B 171 THR SER LEU TYR LYS LYS ALA GLY SER ASN PRO SER GLY SEQRES 3 B 171 GLN VAL ILE ASN GLY VAL HIS HIS TYR THR ILE ASP GLU SEQRES 4 B 171 PHE ASN TYR TYR TYR LYS PRO ASP ARG MET THR TRP HIS SEQRES 5 B 171 VAL GLY GLU LYS VAL GLU LEU THR ILE ASP ASN ARG SER SEQRES 6 B 171 GLN SER ALA PRO PRO ILE ALA HIS GLN PHE SER ILE GLY SEQRES 7 B 171 ARG THR LEU VAL SER ARG ASP ASN GLY PHE PRO LYS SER SEQRES 8 B 171 GLN ALA ILE ALA VAL GLY TRP LYS ASP ASN PHE PHE ASP SEQRES 9 B 171 GLY VAL PRO ILE THR SER GLY GLY GLN THR GLY PRO VAL SEQRES 10 B 171 PRO ALA PHE SER VAL SER LEU ASN GLY GLY GLN LYS TYR SEQRES 11 B 171 THR PHE SER PHE VAL VAL PRO ASN LYS PRO GLY LYS TRP SEQRES 12 B 171 GLU TYR GLY CYS PHE LEU GLN THR GLY GLN ALA PHE MET SEQRES 13 B 171 ASN GLY MET HIS GLY ILE LEU ASP ILE LEU PRO ALA GLN SEQRES 14 B 171 GLY SER HET CU1 A 201 1 HET GOL A 202 6 HET CU1 B 201 1 HET GOL B 202 6 HETNAM CU1 COPPER (I) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CU1 2(CU 1+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *109(H2 O) HELIX 1 AA1 GLY A 164 ASN A 169 1 6 HELIX 2 AA2 LEU B 161 THR B 163 5 3 HELIX 3 AA3 GLY B 164 ASN B 169 1 6 SHEET 1 AA1 4 TYR A 55 LYS A 57 0 SHEET 2 AA1 4 VAL A 44 PHE A 52 -1 N ASP A 50 O LYS A 57 SHEET 3 AA1 4 LYS A 68 ASN A 75 1 O LYS A 68 N HIS A 45 SHEET 4 AA1 4 LYS A 141 VAL A 147 -1 O PHE A 144 N LEU A 71 SHEET 1 AA2 5 ARG A 60 HIS A 64 0 SHEET 2 AA2 5 HIS A 172 LEU A 178 1 O LEU A 178 N TRP A 63 SHEET 3 AA2 5 GLY A 153 GLY A 158 -1 N TRP A 155 O LEU A 175 SHEET 4 AA2 5 HIS A 85 SER A 95 -1 N GLY A 90 O GLU A 156 SHEET 5 AA2 5 ALA A 107 ASN A 113 -1 O GLY A 109 N VAL A 94 SHEET 1 AA3 5 ARG A 60 HIS A 64 0 SHEET 2 AA3 5 HIS A 172 LEU A 178 1 O LEU A 178 N TRP A 63 SHEET 3 AA3 5 GLY A 153 GLY A 158 -1 N TRP A 155 O LEU A 175 SHEET 4 AA3 5 HIS A 85 SER A 95 -1 N GLY A 90 O GLU A 156 SHEET 5 AA3 5 VAL A 134 LEU A 136 -1 O LEU A 136 N HIS A 85 SHEET 1 AA4 2 ILE A 120 SER A 122 0 SHEET 2 AA4 2 GLN A 125 GLY A 127 -1 O GLN A 125 N SER A 122 SHEET 1 AA5 4 TYR B 55 LYS B 57 0 SHEET 2 AA5 4 HIS B 45 PHE B 52 -1 N ASP B 50 O LYS B 57 SHEET 3 AA5 4 LYS B 68 ASN B 75 1 O LYS B 68 N HIS B 45 SHEET 4 AA5 4 LYS B 141 VAL B 147 -1 O PHE B 144 N LEU B 71 SHEET 1 AA6 5 ARG B 60 HIS B 64 0 SHEET 2 AA6 5 HIS B 172 LEU B 178 1 O LEU B 178 N TRP B 63 SHEET 3 AA6 5 GLY B 153 GLY B 158 -1 N TRP B 155 O LEU B 175 SHEET 4 AA6 5 HIS B 85 VAL B 94 -1 N GLY B 90 O GLU B 156 SHEET 5 AA6 5 GLY B 109 ASN B 113 -1 O GLY B 109 N VAL B 94 SHEET 1 AA7 5 ARG B 60 HIS B 64 0 SHEET 2 AA7 5 HIS B 172 LEU B 178 1 O LEU B 178 N TRP B 63 SHEET 3 AA7 5 GLY B 153 GLY B 158 -1 N TRP B 155 O LEU B 175 SHEET 4 AA7 5 HIS B 85 VAL B 94 -1 N GLY B 90 O GLU B 156 SHEET 5 AA7 5 VAL B 134 LEU B 136 -1 O LEU B 136 N HIS B 85 SHEET 1 AA8 2 ILE B 120 SER B 122 0 SHEET 2 AA8 2 GLN B 125 GLY B 127 -1 O GLY B 127 N ILE B 120 LINK ND1 HIS A 85 CU CU1 A 201 1555 1555 1.89 LINK SG CYS A 159 CU CU1 A 201 1555 1555 2.14 LINK ND1 HIS B 85 CU CU1 B 201 1555 1555 1.96 LINK SG CYS B 159 CU CU1 B 201 1555 1555 2.18 CISPEP 1 ASN A 53 TYR A 54 0 -14.16 CISPEP 2 LYS A 57 PRO A 58 0 0.18 CISPEP 3 ALA A 80 PRO A 81 0 2.20 CISPEP 4 LYS B 57 PRO B 58 0 -2.92 CISPEP 5 ALA B 80 PRO B 81 0 -6.38 CRYST1 73.913 73.913 113.870 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013529 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013529 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008782 0.00000