HEADER TRANSFERASE 15-MAR-22 7Z75 TITLE PI3KC2A CORE IN COMPLEX WITH PITCOIN3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4-PHOSPHATE 3-KINASE C2 DOMAIN- COMPND 3 CONTAINING SUBUNIT ALPHA; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PI3K-C2-ALPHA,PTDINS-3-KINASE C2 SUBUNIT ALPHA,CPK-M, COMPND 6 PHOSPHOINOSITIDE 3-KINASE-C2-ALPHA,P170; COMPND 7 EC: 2.7.1.137,2.7.1.153,2.7.1.154,2.7.1.137,2.7.1.153,2.7.1.154, COMPND 8 2.7.1.137,2.7.1.153,2.7.1.154; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIK3C2A, CPK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PI3KC2 ALPHA, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.T.LO,Y.ROSKE,O.DAUMKE,V.HAUCKE REVDAT 3 07-FEB-24 7Z75 1 REMARK REVDAT 2 15-MAR-23 7Z75 1 JRNL REVDAT 1 31-AUG-22 7Z75 0 JRNL AUTH W.T.LO,H.BELABED,M.KUCUKDISLI,J.METAG,Y.ROSKE,P.PROKOFEVA, JRNL AUTH 2 Y.OHASHI,A.HORATSCHECK,D.CIRILLO,M.KRAUSS,C.SCHMIED, JRNL AUTH 3 M.NEUENSCHWANDER,J.P.VON KRIES,G.MEDARD,B.KUSTER,O.PERISIC, JRNL AUTH 4 R.L.WILLIAMS,O.DAUMKE,B.PAYRASTRE,S.SEVERIN,M.NAZARE, JRNL AUTH 5 V.HAUCKE JRNL TITL DEVELOPMENT OF SELECTIVE INHIBITORS OF PHOSPHATIDYLINOSITOL JRNL TITL 2 3-KINASE C2 ALPHA. JRNL REF NAT.CHEM.BIOL. V. 19 18 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 36109648 JRNL DOI 10.1038/S41589-022-01118-Z REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 34404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1811 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.4240 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6547 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.73000 REMARK 3 B22 (A**2) : 3.00000 REMARK 3 B33 (A**2) : -3.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.547 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.367 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 44.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6732 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6473 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9118 ; 1.878 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14900 ; 1.387 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 820 ; 6.962 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;32.609 ;23.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1192 ;18.797 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 877 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7476 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1511 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 1072 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9457 -1.5616 -34.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.0142 REMARK 3 T33: 0.1982 T12: -0.0137 REMARK 3 T13: 0.0033 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.5905 L22: 1.5826 REMARK 3 L33: 2.5601 L12: -0.0303 REMARK 3 L13: 0.1805 L23: 1.2398 REMARK 3 S TENSOR REMARK 3 S11: 0.1385 S12: 0.0206 S13: -0.0025 REMARK 3 S21: -0.0169 S22: 0.0536 S23: -0.0674 REMARK 3 S31: -0.0426 S32: -0.0675 S33: -0.1921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7Z75 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAR-22. REMARK 100 THE DEPOSITION ID IS D_1292121707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 49.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BI4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MTRIS, 8-6% PEG3350, 0.2-0.1M REMARK 280 MGSO4, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.03200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.33950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.20600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.33950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.03200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.20600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 43 REMARK 465 MET A 44 REMARK 465 CYS A 45 REMARK 465 GLY A 46 REMARK 465 GLU A 47 REMARK 465 ASN A 48 REMARK 465 GLY A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 VAL A 271 REMARK 465 MET A 272 REMARK 465 THR A 273 REMARK 465 ARG A 274 REMARK 465 HIS A 275 REMARK 465 SER A 276 REMARK 465 ALA A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 GLY A 280 REMARK 465 SER A 281 REMARK 465 GLY A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 THR A 285 REMARK 465 GLY A 286 REMARK 465 CYS A 287 REMARK 465 PRO A 288 REMARK 465 ARG A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 SER A 390 REMARK 465 GLY A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ASP A 395 REMARK 465 SER A 396 REMARK 465 ASN A 397 REMARK 465 LYS A 398 REMARK 465 GLN A 399 REMARK 465 ARG A 400 REMARK 465 LYS A 401 REMARK 465 SER A 432 REMARK 465 SER A 433 REMARK 465 HIS A 434 REMARK 465 THR A 435 REMARK 465 ASN A 436 REMARK 465 SER A 437 REMARK 465 ILE A 438 REMARK 465 PRO A 439 REMARK 465 GLY A 440 REMARK 465 ALA A 441 REMARK 465 ILE A 442 REMARK 465 PRO A 443 REMARK 465 LYS A 444 REMARK 465 LYS A 445 REMARK 465 SER A 446 REMARK 465 TYR A 447 REMARK 465 GLN A 478 REMARK 465 GLN A 895 REMARK 465 MET A 896 REMARK 465 PHE A 897 REMARK 465 GLY A 898 REMARK 465 SER A 899 REMARK 465 PHE A 900 REMARK 465 LYS A 901 REMARK 465 ARG A 902 REMARK 465 ASP A 903 REMARK 465 ARG A 904 REMARK 465 PHE A 1007 REMARK 465 ILE A 1008 REMARK 465 HIS A 1009 REMARK 465 ASN A 1010 REMARK 465 LEU A 1011 REMARK 465 ALA A 1012 REMARK 465 GLN A 1013 REMARK 465 LEU A 1014 REMARK 465 ARG A 1015 REMARK 465 PHE A 1016 REMARK 465 SER A 1017 REMARK 465 GLY A 1018 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 ASN A 158 CG OD1 ND2 REMARK 470 ARG A 292 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 MET A 449 CG SD CE REMARK 470 GLN A 479 CG CD OE1 NE2 REMARK 470 ASP A 480 CG OD1 OD2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 LEU A 482 CG CD1 CD2 REMARK 470 THR A 545 CG2 REMARK 470 LYS A 889 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 565 OG SER A 953 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 7 CD GLU A 7 OE1 0.069 REMARK 500 GLU A 149 CD GLU A 149 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 763 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 353 82.90 -159.08 REMARK 500 GLU A 375 42.06 -96.89 REMARK 500 ARG A 418 2.39 80.09 REMARK 500 ASP A 480 -128.57 56.44 REMARK 500 ASP A 488 -5.04 87.49 REMARK 500 THR A 688 -4.02 66.84 REMARK 500 LYS A 714 76.73 -160.24 REMARK 500 PRO A 715 1.62 -63.25 REMARK 500 GLN A 977 73.68 39.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7Z75 A 1 158 UNP Q61194 P3C2A_MOUSE 375 532 DBREF 7Z75 A 271 275 UNP Q61194 P3C2A_MOUSE 545 549 DBREF 7Z75 A 284 1018 UNP Q61194 P3C2A_MOUSE 666 1400 SEQADV 7Z75 GLY A 1 UNP Q61194 PHE 375 ENGINEERED MUTATION SEQADV 7Z75 ALA A 2 UNP Q61194 GLU 376 ENGINEERED MUTATION SEQADV 7Z75 GLY A 267 UNP Q61194 LINKER SEQADV 7Z75 SER A 268 UNP Q61194 LINKER SEQADV 7Z75 GLY A 269 UNP Q61194 LINKER SEQADV 7Z75 SER A 270 UNP Q61194 LINKER SEQADV 7Z75 SER A 276 UNP Q61194 LINKER SEQADV 7Z75 ALA A 277 UNP Q61194 LINKER SEQADV 7Z75 GLY A 278 UNP Q61194 LINKER SEQADV 7Z75 ALA A 279 UNP Q61194 LINKER SEQADV 7Z75 GLY A 280 UNP Q61194 LINKER SEQADV 7Z75 SER A 281 UNP Q61194 LINKER SEQADV 7Z75 GLY A 282 UNP Q61194 LINKER SEQADV 7Z75 ALA A 283 UNP Q61194 LINKER SEQADV 7Z75 GLY A 286 UNP Q61194 ALA 668 CONFLICT SEQADV 7Z75 ALA A 353 UNP Q61194 PHE 735 CONFLICT SEQADV 7Z75 ALA A 354 UNP Q61194 PHE 736 CONFLICT SEQADV 7Z75 ALA A 427 UNP Q61194 LEU 809 ENGINEERED MUTATION SEQRES 1 A 910 GLY ALA VAL GLN ASN ASP GLU VAL ALA ALA PHE CYS GLN SEQRES 2 A 910 SER ILE MET LYS LEU LYS THR LYS PHE PRO TYR THR ASP SEQRES 3 A 910 HIS CYS THR ASN PRO GLY TYR LEU LEU SER PRO VAL THR SEQRES 4 A 910 VAL GLN ARG ASN MET CYS GLY GLU ASN ALA SER VAL LYS SEQRES 5 A 910 VAL SER ILE GLU ILE GLU GLY LEU GLN LEU PRO VAL THR SEQRES 6 A 910 PHE THR CYS ASP VAL SER SER THR VAL GLU ILE ILE ILE SEQRES 7 A 910 MET GLN ALA LEU CYS TRP VAL HIS ASP ASP LEU ASN GLN SEQRES 8 A 910 VAL ASP VAL GLY SER TYR ILE LEU LYS VAL CYS GLY GLN SEQRES 9 A 910 GLU GLU VAL LEU GLN ASN ASN HIS CYS LEU GLY SER HIS SEQRES 10 A 910 GLU HIS ILE GLN ASN CYS ARG LYS TRP ASP THR GLU ILE SEQRES 11 A 910 LYS LEU GLN LEU LEU THR LEU SER ALA MET CYS GLN ASN SEQRES 12 A 910 LEU ALA ARG THR ALA GLU ASP ASP GLU ALA PRO VAL ASP SEQRES 13 A 910 LEU ASN GLY SER GLY SER VAL MET THR ARG HIS SER ALA SEQRES 14 A 910 GLY ALA GLY SER GLY ALA SER THR GLY CYS PRO ARG GLY SEQRES 15 A 910 SER ARG ASN ILE LYS GLU ALA TRP THR ALA THR GLU GLN SEQRES 16 A 910 LEU GLN PHE THR VAL TYR ALA ALA HIS GLY ILE SER SER SEQRES 17 A 910 ASN TRP VAL SER ASN TYR GLU LYS TYR TYR LEU ILE CYS SEQRES 18 A 910 SER LEU SER HIS ASN GLY LYS ASP LEU PHE LYS PRO ILE SEQRES 19 A 910 GLN SER LYS LYS VAL GLY THR TYR LYS ASN ALA ALA TYR SEQRES 20 A 910 LEU ILE LYS TRP ASP GLU LEU ILE ILE PHE PRO ILE GLN SEQRES 21 A 910 ILE SER GLN LEU PRO LEU GLU SER VAL LEU HIS LEU THR SEQRES 22 A 910 LEU PHE GLY VAL LEU ASN GLN SER SER GLY SER SER PRO SEQRES 23 A 910 ASP SER ASN LYS GLN ARG LYS GLY PRO GLU ALA LEU GLY SEQRES 24 A 910 LYS VAL SER LEU THR LEU PHE ASP PHE LYS ARG PHE LEU SEQRES 25 A 910 THR CYS GLY THR LYS LEU ALA TYR LEU TRP THR SER SER SEQRES 26 A 910 HIS THR ASN SER ILE PRO GLY ALA ILE PRO LYS LYS SER SEQRES 27 A 910 TYR VAL MET GLU ARG ILE VAL LEU GLN VAL ASP PHE PRO SEQRES 28 A 910 SER PRO ALA PHE ASP ILE ILE TYR THR SER PRO GLN ILE SEQRES 29 A 910 ASP ARG ASN ILE ILE GLN GLN ASP LYS LEU GLU THR LEU SEQRES 30 A 910 GLU SER ASP ILE LYS GLY LYS LEU LEU ASP ILE ILE HIS SEQRES 31 A 910 ARG ASP SER SER PHE GLY LEU SER LYS GLU ASP LYS VAL SEQRES 32 A 910 PHE LEU TRP GLU ASN ARG TYR TYR CYS LEU LYS HIS PRO SEQRES 33 A 910 ASN CYS LEU PRO LYS ILE LEU ALA SER ALA PRO ASN TRP SEQRES 34 A 910 LYS TRP ALA ASN LEU ALA LYS THR TYR SER LEU LEU HIS SEQRES 35 A 910 GLN TRP PRO PRO LEU CYS PRO LEU ALA ALA LEU GLU LEU SEQRES 36 A 910 LEU ASP ALA LYS PHE ALA ASP GLN GLU VAL ARG SER LEU SEQRES 37 A 910 ALA VAL SER TRP MET GLU ALA ILE SER ASP ASP GLU LEU SEQRES 38 A 910 ALA ASP LEU LEU PRO GLN PHE VAL GLN ALA LEU LYS TYR SEQRES 39 A 910 GLU ILE TYR LEU ASN SER SER LEU VAL ARG PHE LEU LEU SEQRES 40 A 910 SER ARG ALA LEU GLY ASN ILE GLN ILE ALA HIS SER LEU SEQRES 41 A 910 TYR TRP LEU LEU LYS ASP ALA LEU HIS ASP THR HIS PHE SEQRES 42 A 910 GLY SER ARG TYR GLU HIS VAL LEU GLY ALA LEU LEU SER SEQRES 43 A 910 VAL GLY GLY LYS GLY LEU ARG GLU GLU LEU SER LYS GLN SEQRES 44 A 910 MET LYS LEU VAL GLN LEU LEU GLY GLY VAL ALA GLU LYS SEQRES 45 A 910 VAL ARG GLN ALA SER GLY SER THR ARG GLN VAL VAL LEU SEQRES 46 A 910 GLN LYS SER MET GLU ARG VAL GLN SER PHE PHE LEU ARG SEQRES 47 A 910 ASN LYS CYS ARG LEU PRO LEU LYS PRO SER LEU VAL ALA SEQRES 48 A 910 LYS GLU LEU ASN ILE LYS SER CYS SER PHE PHE SER SER SEQRES 49 A 910 ASN ALA MET PRO LEU LYS VAL THR MET VAL ASN ALA ASP SEQRES 50 A 910 PRO LEU GLY GLU GLU ILE ASN VAL MET PHE LYS VAL GLY SEQRES 51 A 910 GLU ASP LEU ARG GLN ASP MET LEU ALA LEU GLN MET ILE SEQRES 52 A 910 LYS ILE MET ASP LYS ILE TRP LEU LYS GLU GLY LEU ASP SEQRES 53 A 910 LEU ARG MET VAL ILE PHE ARG CYS LEU SER THR GLY ARG SEQRES 54 A 910 ASP ARG GLY MET VAL GLU LEU VAL PRO ALA SER ASP THR SEQRES 55 A 910 LEU ARG LYS ILE GLN VAL GLU TYR GLY VAL THR GLY SER SEQRES 56 A 910 PHE LYS ASP LYS PRO LEU ALA GLU TRP LEU ARG LYS TYR SEQRES 57 A 910 ASN PRO SER GLU GLU GLU TYR GLU LYS ALA SER GLU ASN SEQRES 58 A 910 PHE ILE TYR SER CYS ALA GLY CYS CYS VAL ALA THR TYR SEQRES 59 A 910 VAL LEU GLY ILE CYS ASP ARG HIS ASN ASP ASN ILE MET SEQRES 60 A 910 LEU ARG SER THR GLY HIS MET PHE HIS ILE ASP PHE GLY SEQRES 61 A 910 LYS PHE LEU GLY HIS ALA GLN MET PHE GLY SER PHE LYS SEQRES 62 A 910 ARG ASP ARG ALA PRO PHE VAL LEU THR SER ASP MET ALA SEQRES 63 A 910 TYR VAL ILE ASN GLY GLY GLU LYS PRO THR ILE ARG PHE SEQRES 64 A 910 GLN LEU PHE VAL ASP LEU CYS CYS GLN ALA TYR ASN LEU SEQRES 65 A 910 ILE ARG LYS GLN THR ASN LEU PHE LEU ASN LEU LEU SER SEQRES 66 A 910 LEU MET ILE PRO SER GLY LEU PRO GLU LEU THR SER ILE SEQRES 67 A 910 GLN ASP LEU LYS TYR VAL ARG ASP ALA LEU GLN PRO GLN SEQRES 68 A 910 THR THR ASP ALA GLU ALA THR ILE PHE PHE THR ARG LEU SEQRES 69 A 910 ILE GLU SER SER LEU GLY SER ILE ALA THR LYS PHE ASN SEQRES 70 A 910 PHE PHE ILE HIS ASN LEU ALA GLN LEU ARG PHE SER GLY HET IG3 A1101 40 HET EDO A1102 4 HET SO4 A1103 5 HETNAM IG3 ~{N}-[4-[3-(METHYLSULFONYLAMINO)PHENYL]-1,3-THIAZOL-2- HETNAM 2 IG3 YL]-2-[4-OXIDANYLIDENE-3-(2-PHENYLETHYL)PTERIDIN-2- HETNAM 3 IG3 YL]SULFANYL-ETHANAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 IG3 C26 H23 N7 O4 S3 FORMUL 3 EDO C2 H6 O2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *62(H2 O) HELIX 1 AA1 VAL A 3 THR A 20 1 18 HELIX 2 AA2 THR A 73 ALA A 81 1 9 HELIX 3 AA3 ALA A 81 HIS A 86 1 6 HELIX 4 AA4 ASP A 88 VAL A 92 5 5 HELIX 5 AA5 HIS A 117 ASP A 127 1 11 HELIX 6 AA6 SER A 138 MET A 140 5 3 HELIX 7 AA7 THR A 147 ALA A 153 1 7 HELIX 8 AA8 SER A 315 ASN A 321 1 7 HELIX 9 AA9 SER A 370 LEU A 372 5 3 HELIX 10 AB1 ASP A 488 HIS A 498 1 11 HELIX 11 AB2 SER A 506 ASN A 516 1 11 HELIX 12 AB3 ARG A 517 ASN A 525 5 9 HELIX 13 AB4 CYS A 526 ALA A 532 1 7 HELIX 14 AB5 LYS A 538 TRP A 552 1 15 HELIX 15 AB6 CYS A 556 LEU A 561 1 6 HELIX 16 AB7 GLU A 562 ASP A 565 5 4 HELIX 17 AB8 ASP A 570 GLU A 582 1 13 HELIX 18 AB9 SER A 585 ALA A 599 1 15 HELIX 19 AC1 LEU A 600 GLU A 603 5 4 HELIX 20 AC2 SER A 608 ASN A 621 1 14 HELIX 21 AC3 ASN A 621 LEU A 636 1 16 HELIX 22 AC4 PHE A 641 ALA A 684 1 44 HELIX 23 AC5 THR A 688 LEU A 705 1 18 HELIX 24 AC6 LEU A 761 GLU A 781 1 21 HELIX 25 AC7 LEU A 811 THR A 821 1 11 HELIX 26 AC8 ASP A 826 ASN A 837 1 12 HELIX 27 AC9 SER A 839 LEU A 864 1 26 HELIX 28 AD1 THR A 910 GLY A 919 1 10 HELIX 29 AD2 THR A 924 LYS A 943 1 20 HELIX 30 AD3 GLN A 944 LEU A 954 1 11 HELIX 31 AD4 MET A 955 GLY A 959 5 5 HELIX 32 AD5 SER A 965 LEU A 976 1 12 HELIX 33 AD6 THR A 981 LEU A 997 1 17 HELIX 34 AD7 SER A 999 PHE A 1004 5 6 SHEET 1 AA1 2 LEU A 34 LEU A 35 0 SHEET 2 AA1 2 GLU A 106 VAL A 107 1 O VAL A 107 N LEU A 34 SHEET 1 AA2 4 VAL A 64 ASP A 69 0 SHEET 2 AA2 4 SER A 50 GLU A 56 -1 N ILE A 55 O VAL A 64 SHEET 3 AA2 4 ILE A 130 THR A 136 1 O LEU A 134 N GLU A 56 SHEET 4 AA2 4 TYR A 97 VAL A 101 -1 N ILE A 98 O LEU A 135 SHEET 1 AA3 2 ILE A 294 GLU A 296 0 SHEET 2 AA3 2 ASP A 464 ILE A 466 1 O ILE A 466 N LYS A 295 SHEET 1 AA4 5 THR A 349 TYR A 350 0 SHEET 2 AA4 5 ALA A 353 GLN A 368 -1 O LEU A 356 N TYR A 350 SHEET 3 AA4 5 GLN A 303 HIS A 312 -1 N PHE A 306 O ILE A 363 SHEET 4 AA4 5 GLU A 450 ASP A 457 -1 O VAL A 453 N HIS A 312 SHEET 5 AA4 5 THR A 424 THR A 431 -1 N ALA A 427 O LEU A 454 SHEET 1 AA5 4 LYS A 336 GLN A 343 0 SHEET 2 AA5 4 TYR A 322 HIS A 333 -1 N CYS A 329 O ILE A 342 SHEET 3 AA5 4 VAL A 377 LEU A 386 -1 O THR A 381 N ILE A 328 SHEET 4 AA5 4 GLU A 404 GLY A 407 -1 O LEU A 406 N LEU A 382 SHEET 1 AA6 4 LYS A 336 GLN A 343 0 SHEET 2 AA6 4 TYR A 322 HIS A 333 -1 N CYS A 329 O ILE A 342 SHEET 3 AA6 4 VAL A 377 LEU A 386 -1 O THR A 381 N ILE A 328 SHEET 4 AA6 4 SER A 410 THR A 412 -1 O LEU A 411 N LEU A 378 SHEET 1 AA7 4 CYS A 709 LEU A 711 0 SHEET 2 AA7 4 LYS A 714 LEU A 722 -1 O LEU A 717 N LEU A 711 SHEET 3 AA7 4 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA7 4 SER A 728 PHE A 729 -1 N SER A 728 O LYS A 738 SHEET 1 AA8 6 CYS A 709 LEU A 711 0 SHEET 2 AA8 6 LYS A 714 LEU A 722 -1 O LEU A 717 N LEU A 711 SHEET 3 AA8 6 LEU A 737 ASN A 743 -1 O VAL A 742 N GLU A 721 SHEET 4 AA8 6 ILE A 751 VAL A 757 -1 O ILE A 751 N MET A 741 SHEET 5 AA8 6 ARG A 799 GLU A 803 -1 O VAL A 802 N MET A 754 SHEET 6 AA8 6 CYS A 792 SER A 794 -1 N LEU A 793 O MET A 801 SHEET 1 AA9 3 SER A 808 THR A 810 0 SHEET 2 AA9 3 ILE A 874 ARG A 877 -1 O LEU A 876 N ASP A 809 SHEET 3 AA9 3 MET A 882 HIS A 884 -1 O PHE A 883 N MET A 875 CRYST1 56.064 134.412 152.679 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006550 0.00000