data_7ZEO # _entry.id 7ZEO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ZEO pdb_00007zeo 10.2210/pdb7zeo/pdb WWPDB D_1292122142 ? ? BMRB 34723 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of a hybrid-type G-quadruplex with a snapback loop and an all-syn G-column (hybrid-1R)' _pdbx_database_related.db_id 34723 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7ZEO _pdbx_database_status.recvd_initial_deposition_date 2022-03-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jana, J.' 1 0000-0002-8696-0939 'Vianney, Y.M.' 2 ? 'Schroeder, N.' 3 ? 'Weisz, K.' 4 0000-0002-2736-6606 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 7161 _citation.page_last 7175 _citation.title 'Guiding the folding of G-quadruplexes through loop residue interactions.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac549 _citation.pdbx_database_id_PubMed 35758626 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jana, J.' 1 ? primary 'Vianney, Y.M.' 2 ? primary 'Schroder, N.' 3 ? primary 'Weisz, K.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(DG5)P*(BGM)P*CP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*GP*GP*GP*TP*CP*AP*(DG3))-3') ; _entity.formula_weight 6325.977 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(L1J)(BGM)(DC)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DC)(DA) (DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGCTAGGGTGGGTGGGTCAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 L1J n 1 2 BGM n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DT n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DT n 1 18 DC n 1 19 DA n 1 20 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 20 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7ZEO _struct_ref.pdbx_db_accession 7ZEO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7ZEO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7ZEO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BGM 'DNA linking' n "8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H13 Br N5 O7 P' 426.117 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 L1J non-polymer n '2-azanyl-9-[(2~{R},4~{S},5~{R})-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-1~{H}-purin-6-one' ? 'C10 H13 N5 O4' 267.241 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details '30C, 10 mM potassium phosphate pH 7.0' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.3 mM DNA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '30C, 10 mM potassium phosphate pH 7.0' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE NEO' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7ZEO _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 7ZEO _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7ZEO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber 16 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'structure calculation' 'X-PLOR NIH' 3.0.3 'Schwieters, Kuszewski, Tjandra and Clore' 3 'chemical shift assignment' 'CcpNmr Analysis' 2.4.2 CCPN 4 'peak picking' 'CcpNmr Analysis' 2.4.2 CCPN 5 'data analysis' 'CcpNmr Analysis' 2.4.2 CCPN 6 processing TopSpin 4.0.7 'Bruker Biospin' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ZEO _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7ZEO _struct.title 'Structure of a hybrid-type G-quadruplex with a snapback loop and an all-syn G-column (hybrid-1R)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ZEO _struct_keywords.text 'hybrid G-quadruplex, snapback loop, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A L1J 1 "O3'" ? ? ? 1_555 A BGM 2 P ? ? A L1J 1 A BGM 2 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A BGM 2 "O3'" ? ? ? 1_555 A DC 3 P ? ? A BGM 2 A DC 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? A L1J 1 N1 ? ? ? 1_555 A DG 7 O6 ? ? A L1J 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A L1J 1 N2 ? ? ? 1_555 A DG 7 N7 ? ? A L1J 1 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A L1J 1 N7 ? ? ? 1_555 A DG 15 N2 ? ? A L1J 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A L1J 1 O6 ? ? ? 1_555 A DG 15 N1 ? ? A L1J 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A BGM 2 N1 ? ? ? 1_555 A DG 6 O6 ? ? A BGM 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A BGM 2 N2 ? ? ? 1_555 A DG 6 N7 ? ? A BGM 2 A DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A BGM 2 N7 ? ? ? 1_555 A DG 14 N2 ? ? A BGM 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A BGM 2 O6 ? ? ? 1_555 A DG 14 N1 ? ? A BGM 2 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 O6 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 N7 ? ? A DG 8 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 8 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 8 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 8 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 11 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 11 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 12 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 12 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 16 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 19 N7 ? ? A DT 17 A DA 19 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 19 N6 ? ? A DT 17 A DA 19 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7ZEO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol BR C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 L1J 1 1 1 L1J DG5 A . n A 1 2 BGM 2 2 2 BGM BGM A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DA 19 19 19 DA DA A . n A 1 20 DG 20 20 20 DG DG3 A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email weisz@uni-greifswald.de _pdbx_contact_author.name_first Klaus _pdbx_contact_author.name_last Weisz _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2736-6606 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-06-15 2 'Structure model' 1 1 2022-07-06 3 'Structure model' 1 2 2022-11-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_DOI' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_entry_details.entry_id 7ZEO _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component DNA _pdbx_nmr_exptl_sample.concentration 0.3 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.97 108.30 2.67 0.30 N 2 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.19 121.90 -4.71 0.70 N 3 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.34 108.30 2.04 0.30 N 4 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.13 122.90 -3.77 0.60 N 5 1 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.70 117.00 -3.30 0.50 N 6 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.41 117.70 3.71 0.50 N 7 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.36 118.60 -6.24 0.60 N 8 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.15 108.30 1.85 0.30 N 9 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.44 108.30 3.14 0.30 N 10 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.50 108.30 2.20 0.30 N 11 1 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.23 122.90 -3.67 0.60 N 12 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.76 108.30 3.46 0.30 N 13 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.99 108.30 2.69 0.30 N 14 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.12 122.90 -3.78 0.60 N 15 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.32 108.30 2.02 0.30 N 16 1 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.70 108.30 4.40 0.30 N 17 1 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.15 122.90 -3.75 0.60 N 18 1 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 112.77 108.30 4.47 0.30 N 19 1 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.33 121.90 -4.57 0.70 N 20 1 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.05 117.70 3.35 0.50 N 21 1 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.46 118.60 -5.14 0.60 N 22 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.61 108.30 2.31 0.30 N 23 2 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.18 121.90 -4.72 0.70 N 24 2 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.97 108.30 2.67 0.30 N 25 2 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.85 122.90 -4.05 0.60 N 26 2 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.48 117.00 -3.52 0.50 N 27 2 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.45 117.70 3.75 0.50 N 28 2 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 111.23 118.60 -7.37 0.60 N 29 2 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.52 108.30 2.22 0.30 N 30 2 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.22 122.90 -3.68 0.60 N 31 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.20 108.30 1.90 0.30 N 32 2 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.00 108.30 2.70 0.30 N 33 2 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.19 122.90 -3.71 0.60 N 34 2 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.82 108.30 2.52 0.30 N 35 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.26 108.30 1.96 0.30 N 36 2 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.77 108.30 4.47 0.30 N 37 2 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 118.63 122.90 -4.27 0.60 N 38 2 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 113.05 108.30 4.75 0.30 N 39 2 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.53 121.90 -4.37 0.70 N 40 2 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.05 117.70 3.35 0.50 N 41 2 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.50 118.60 -5.10 0.60 N 42 3 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.84 108.30 2.54 0.30 N 43 3 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.20 121.90 -4.70 0.70 N 44 3 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.80 108.30 2.50 0.30 N 45 3 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.36 122.90 -4.54 0.60 N 46 3 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.75 117.00 -3.25 0.50 N 47 3 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.30 117.70 3.60 0.50 N 48 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.64 118.60 -5.96 0.60 N 49 3 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.84 108.30 2.54 0.30 N 50 3 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.59 108.30 2.29 0.30 N 51 3 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.17 122.90 -3.73 0.60 N 52 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.31 108.30 2.01 0.30 N 53 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.78 108.30 4.48 0.30 N 54 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 110.52 108.30 2.22 0.30 N 55 3 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.22 108.30 1.92 0.30 N 56 3 N3 A DT 13 ? ? C2 A DT 13 ? ? O2 A DT 13 ? ? 118.28 122.30 -4.02 0.60 N 57 3 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.10 122.90 -3.80 0.60 N 58 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.82 108.30 2.52 0.30 N 59 3 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 113.37 108.30 5.07 0.30 N 60 3 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.23 122.90 -3.67 0.60 N 61 3 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 110.90 108.30 2.60 0.30 N 62 3 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.10 121.90 -4.80 0.70 N 63 3 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.14 117.70 3.44 0.50 N 64 3 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.59 118.60 -5.01 0.60 N 65 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.15 108.30 1.85 0.30 N 66 4 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.68 108.30 3.38 0.30 N 67 4 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.53 121.90 -4.37 0.70 N 68 4 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.13 122.90 -3.77 0.60 N 69 4 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.81 117.00 -3.19 0.50 N 70 4 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.54 117.70 3.84 0.50 N 71 4 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.85 118.60 -5.75 0.60 N 72 4 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.27 108.30 3.97 0.30 N 73 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.96 108.30 2.66 0.30 N 74 4 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.70 108.30 2.40 0.30 N 75 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.55 108.30 2.25 0.30 N 76 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.56 108.30 4.26 0.30 N 77 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.18 108.30 2.88 0.30 N 78 4 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.45 108.30 2.15 0.30 N 79 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.25 122.90 -3.65 0.60 N 80 4 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.50 108.30 4.20 0.30 N 81 4 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 113.15 108.30 4.85 0.30 N 82 4 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.43 121.90 -4.47 0.70 N 83 4 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.07 117.70 3.37 0.50 N 84 4 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.57 118.60 -5.03 0.60 N 85 5 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.74 108.30 2.44 0.30 N 86 5 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 116.98 121.90 -4.92 0.70 N 87 5 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.10 108.30 1.80 0.30 N 88 5 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.14 122.90 -3.76 0.60 N 89 5 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.65 117.00 -3.35 0.50 N 90 5 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.32 117.70 3.62 0.50 N 91 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.12 118.60 -5.48 0.60 N 92 5 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.85 108.30 2.55 0.30 N 93 5 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.23 108.30 1.93 0.30 N 94 5 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.44 108.30 2.14 0.30 N 95 5 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.18 122.90 -3.72 0.60 N 96 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.97 108.30 3.67 0.30 N 97 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.46 108.30 4.16 0.30 N 98 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.20 122.90 -3.70 0.60 N 99 5 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.85 108.30 4.55 0.30 N 100 5 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 113.05 108.30 4.75 0.30 N 101 5 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.38 121.90 -4.52 0.70 N 102 5 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.12 117.70 3.42 0.50 N 103 5 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.51 118.60 -5.09 0.60 N 104 6 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.43 108.30 3.13 0.30 N 105 6 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.25 121.90 -4.65 0.70 N 106 6 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.10 108.30 1.80 0.30 N 107 6 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.19 122.90 -3.71 0.60 N 108 6 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.80 117.00 -3.20 0.50 N 109 6 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.29 117.70 3.59 0.50 N 110 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.68 118.60 -5.92 0.60 N 111 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.74 108.30 3.44 0.30 N 112 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.21 108.30 1.91 0.30 N 113 6 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 118.87 122.90 -4.03 0.60 N 114 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.44 108.30 3.14 0.30 N 115 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.13 108.30 2.83 0.30 N 116 6 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.75 108.30 2.45 0.30 N 117 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.12 122.90 -3.78 0.60 N 118 6 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.90 108.30 2.60 0.30 N 119 6 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.73 108.30 2.43 0.30 N 120 6 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.15 122.90 -3.75 0.60 N 121 6 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 113.92 108.30 5.62 0.30 N 122 6 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.23 121.90 -4.67 0.70 N 123 6 "O4'" A DA 19 ? ? "C1'" A DA 19 ? ? N9 A DA 19 ? ? 112.63 108.30 4.33 0.30 N 124 6 C4 A DA 19 ? ? C5 A DA 19 ? ? C6 A DA 19 ? ? 113.65 117.00 -3.35 0.50 N 125 6 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.43 117.70 3.73 0.50 N 126 6 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 112.92 118.60 -5.68 0.60 N 127 6 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.61 108.30 2.31 0.30 N 128 7 "C3'" A L1J 1 ? ? "O3'" A L1J 1 ? ? P A BGM 2 ? ? 127.05 119.70 7.35 1.20 Y 129 7 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.65 108.30 2.35 0.30 N 130 7 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.32 121.90 -4.58 0.70 N 131 7 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.09 108.30 2.79 0.30 N 132 7 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.06 122.90 -3.84 0.60 N 133 7 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.75 117.00 -3.25 0.50 N 134 7 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.32 117.70 3.62 0.50 N 135 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.04 118.60 -5.56 0.60 N 136 7 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.36 108.30 2.06 0.30 N 137 7 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.65 108.30 2.35 0.30 N 138 7 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.15 122.90 -3.75 0.60 N 139 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.65 108.30 3.35 0.30 N 140 7 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.21 108.30 2.91 0.30 N 141 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.26 122.90 -3.64 0.60 N 142 7 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.94 108.30 2.64 0.30 N 143 7 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 111.38 108.30 3.08 0.30 N 144 7 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 119.07 122.90 -3.83 0.60 N 145 7 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 112.79 108.30 4.49 0.30 N 146 7 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.13 121.90 -4.77 0.70 N 147 7 "O4'" A DA 19 ? ? "C1'" A DA 19 ? ? N9 A DA 19 ? ? 112.89 108.30 4.59 0.30 N 148 7 C4 A DA 19 ? ? C5 A DA 19 ? ? C6 A DA 19 ? ? 113.62 117.00 -3.38 0.50 N 149 7 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.45 117.70 3.75 0.50 N 150 7 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 112.95 118.60 -5.65 0.60 N 151 8 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 112.04 108.30 3.74 0.30 N 152 8 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.52 121.90 -4.38 0.70 N 153 8 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.00 108.30 2.70 0.30 N 154 8 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.05 122.90 -3.85 0.60 N 155 8 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.66 117.00 -3.34 0.50 N 156 8 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.56 117.70 3.86 0.50 N 157 8 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.37 118.60 -5.23 0.60 N 158 8 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.60 108.30 2.30 0.30 N 159 8 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.38 108.30 2.08 0.30 N 160 8 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.34 108.30 2.04 0.30 N 161 8 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.14 122.90 -3.76 0.60 N 162 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.60 108.30 3.30 0.30 N 163 8 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.35 108.30 3.05 0.30 N 164 8 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.61 108.30 2.31 0.30 N 165 8 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.70 122.90 -4.20 0.60 N 166 8 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.12 108.30 1.82 0.30 N 167 8 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.63 108.30 4.33 0.30 N 168 8 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 111.47 108.30 3.17 0.30 N 169 8 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.05 121.90 -4.85 0.70 N 170 8 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.06 117.70 3.36 0.50 N 171 8 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.45 118.60 -5.15 0.60 N 172 9 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.79 108.30 2.49 0.30 N 173 9 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.21 121.90 -4.69 0.70 N 174 9 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 110.79 108.30 2.49 0.30 N 175 9 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.17 122.90 -3.73 0.60 N 176 9 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.74 117.00 -3.26 0.50 N 177 9 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.28 117.70 3.58 0.50 N 178 9 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.83 118.60 -5.77 0.60 N 179 9 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.45 108.30 2.15 0.30 N 180 9 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.69 108.30 2.39 0.30 N 181 9 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.09 122.90 -3.81 0.60 N 182 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.13 108.30 2.83 0.30 N 183 9 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.04 108.30 2.74 0.30 N 184 9 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.66 108.30 2.36 0.30 N 185 9 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.21 122.90 -3.69 0.60 N 186 9 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.66 108.30 3.36 0.30 N 187 9 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 111.61 108.30 3.31 0.30 N 188 9 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.34 108.30 4.04 0.30 N 189 9 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 113.17 108.30 4.87 0.30 N 190 9 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.37 121.90 -4.53 0.70 N 191 9 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.11 117.70 3.41 0.50 N 192 9 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.55 118.60 -5.05 0.60 N 193 10 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.75 108.30 2.45 0.30 N 194 10 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.09 121.90 -4.81 0.70 N 195 10 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.45 108.30 3.15 0.30 N 196 10 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 119.07 122.90 -3.83 0.60 N 197 10 C4 A DA 5 ? ? C5 A DA 5 ? ? C6 A DA 5 ? ? 113.79 117.00 -3.21 0.50 N 198 10 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 121.29 117.70 3.59 0.50 N 199 10 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.56 118.60 -5.04 0.60 N 200 10 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.74 108.30 2.44 0.30 N 201 10 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.33 108.30 2.03 0.30 N 202 10 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 110.27 108.30 1.97 0.30 N 203 10 C6 A DT 9 ? ? C5 A DT 9 ? ? C7 A DT 9 ? ? 119.17 122.90 -3.73 0.60 N 204 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.36 108.30 3.06 0.30 N 205 10 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.44 108.30 3.14 0.30 N 206 10 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 110.22 108.30 1.92 0.30 N 207 10 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.12 122.90 -3.78 0.60 N 208 10 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.42 108.30 4.12 0.30 N 209 10 "O4'" A DC 18 ? ? "C1'" A DC 18 ? ? N1 A DC 18 ? ? 110.32 108.30 2.02 0.30 N 210 10 N3 A DC 18 ? ? C2 A DC 18 ? ? O2 A DC 18 ? ? 117.07 121.90 -4.83 0.70 N 211 10 C5 A DA 19 ? ? C6 A DA 19 ? ? N1 A DA 19 ? ? 121.07 117.70 3.37 0.50 N 212 10 N1 A DA 19 ? ? C6 A DA 19 ? ? N6 A DA 19 ? ? 113.51 118.60 -5.09 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 17 ? ? 0.089 'SIDE CHAIN' 2 1 DG A 20 ? ? 0.068 'SIDE CHAIN' 3 2 DT A 17 ? ? 0.099 'SIDE CHAIN' 4 2 DG A 20 ? ? 0.078 'SIDE CHAIN' 5 3 DG A 12 ? ? 0.072 'SIDE CHAIN' 6 3 DT A 17 ? ? 0.065 'SIDE CHAIN' 7 3 DG A 20 ? ? 0.067 'SIDE CHAIN' 8 4 DG A 7 ? ? 0.053 'SIDE CHAIN' 9 4 DT A 17 ? ? 0.087 'SIDE CHAIN' 10 4 DG A 20 ? ? 0.073 'SIDE CHAIN' 11 5 DT A 17 ? ? 0.088 'SIDE CHAIN' 12 5 DG A 20 ? ? 0.061 'SIDE CHAIN' 13 7 DT A 13 ? ? 0.082 'SIDE CHAIN' 14 8 DT A 17 ? ? 0.078 'SIDE CHAIN' 15 8 DG A 20 ? ? 0.103 'SIDE CHAIN' 16 9 DG A 14 ? ? 0.059 'SIDE CHAIN' 17 9 DT A 17 ? ? 0.083 'SIDE CHAIN' 18 9 DG A 20 ? ? 0.076 'SIDE CHAIN' 19 10 DT A 17 ? ? 0.122 'SIDE CHAIN' 20 10 DG A 20 ? ? 0.085 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 7ZEO _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 10 1_555 A DG 14 1_555 1.708 3.459 -0.236 4.362 -7.904 -89.880 1 A_DG10:DG14_A A 10 ? A 14 ? 6 3 1 A DG 6 1_555 A BGM 2 1_555 -1.628 -3.377 -0.115 1.525 8.719 93.246 2 A_DG6:BGM2_A A 6 ? A 2 ? 6 3 1 A DG 7 1_555 A DG 11 1_555 1.715 3.451 0.033 0.217 -3.427 -88.771 3 A_DG7:DG11_A A 7 ? A 11 ? 6 3 1 A DG 15 1_555 A L1J 1 1_555 1.769 3.308 -0.385 6.411 2.168 -90.497 4 A_DG15:L1J1_A A 15 ? A 1 ? 6 3 1 A DG 16 1_555 A DG 20 1_555 2.111 3.081 -0.196 11.037 -9.493 -90.734 5 A_DG16:DG20_A A 16 ? A 20 ? 6 3 1 A DG 12 1_555 A DG 8 1_555 -2.048 -3.136 0.235 -5.826 5.101 90.383 6 A_DG12:DG8_A A 12 ? A 8 ? 6 3 1 A DT 17 1_555 A DA 19 1_555 -0.563 3.735 -1.360 30.244 -6.825 -66.374 7 A_DT17:DA19_A A 17 ? A 19 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 10 1_555 A DG 14 1_555 A DG 6 1_555 A BGM 2 1_555 1.969 3.333 0.079 -1.639 -3.746 -179.436 -1.667 0.985 0.080 1.873 -0.820 -179.436 1 AA_DG10DG6:BGM2DG14_AA A 10 ? A 14 ? A 6 ? A 2 ? 1 A DG 6 1_555 A BGM 2 1_555 A DG 7 1_555 A DG 11 1_555 -1.770 -2.898 3.195 -0.985 6.773 114.080 -1.797 1.043 3.092 4.034 0.587 114.212 2 AA_DG6DG7:DG11BGM2_AA A 6 ? A 2 ? A 7 ? A 11 ? 1 A DG 15 1_555 A L1J 1 1_555 A DG 16 1_555 A DG 20 1_555 -0.370 -0.553 3.172 2.190 5.555 32.184 -1.895 1.016 3.006 9.913 -3.908 32.719 3 AA_DG15DG16:DG20L1J1_AA A 15 ? A 1 ? A 16 ? A 20 ? 1 A DG 16 1_555 A DG 20 1_555 A DG 12 1_555 A DG 8 1_555 -2.007 -3.233 0.252 -3.289 11.403 179.083 -1.616 1.004 0.250 5.702 1.644 179.088 4 AA_DG16DG12:DG8DG20_AA A 16 ? A 20 ? A 12 ? A 8 ? 1 A DG 12 1_555 A DG 8 1_555 A DT 17 1_555 A DA 19 1_555 -0.077 0.024 2.993 -0.684 -11.203 -162.889 0.010 -0.040 2.993 5.664 -0.346 -162.972 5 AA_DG12DT17:DA19DG8_AA A 12 ? A 8 ? A 17 ? A 19 ? # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 410497337 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #