HEADER IMMUNE SYSTEM 01-APR-22 7ZFF TITLE OMI-42 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMI-42 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: OMI-42 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, OMICRON, BA.1, BA.2, RBD, ANTIBODY, FAB, OMI-42, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.ZHOU,J.HUO,J.REN,D.I.STUART REVDAT 4 31-JAN-24 7ZFF 1 REMARK REVDAT 3 22-JUN-22 7ZFF 1 JRNL REVDAT 2 15-JUN-22 7ZFF 1 JRNL REVDAT 1 01-JUN-22 7ZFF 0 JRNL AUTH R.NUTALAI,D.ZHOU,A.TUEKPRAKHON,H.M.GINN,P.SUPASA,C.LIU, JRNL AUTH 2 J.HUO,A.J.MENTZER,H.M.E.DUYVESTEYN,A.DIJOKAITE-GURALIUC, JRNL AUTH 3 D.SKELLY,T.G.RITTER,A.AMINI,S.BIBI,S.ADELE,S.A.JOHNSON, JRNL AUTH 4 B.CONSTANTINIDES,H.WEBSTER,N.TEMPERTON,P.KLENERMAN,E.BARNES, JRNL AUTH 5 S.J.DUNACHIE,D.CROOK,A.J.POLLARD,T.LAMBE,P.GOULDER, JRNL AUTH 6 N.G.PATERSON,M.A.WILLIAMS,D.R.HALL,J.MONGKOLSAPAYA,E.E.FRY, JRNL AUTH 7 W.DEJNIRATTISAI,J.REN,D.I.STUART,G.R.SCREATON JRNL TITL POTENT CROSS-REACTIVE ANTIBODIES FOLLOWING OMICRON JRNL TITL 2 BREAKTHROUGH IN VACCINEES. JRNL REF CELL V. 185 2116 2022 JRNL REFN ISSN 1097-4172 JRNL PMID 35662412 JRNL DOI 10.1016/J.CELL.2022.05.014 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 16484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.2000 - 4.2200 1.00 2898 146 0.1920 0.2222 REMARK 3 2 4.2200 - 3.3500 1.00 2834 161 0.2133 0.2439 REMARK 3 3 3.3500 - 2.9200 1.00 2787 151 0.2577 0.2890 REMARK 3 4 2.9200 - 2.6600 1.00 2802 161 0.2785 0.3400 REMARK 3 5 2.6600 - 2.4700 0.90 2502 144 0.3183 0.3683 REMARK 3 6 2.4700 - 2.3200 0.65 1796 102 0.3357 0.3842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.373 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.913 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3358 REMARK 3 ANGLE : 0.520 4566 REMARK 3 CHIRALITY : 0.043 507 REMARK 3 PLANARITY : 0.005 579 REMARK 3 DIHEDRAL : 11.442 1182 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3312 -15.2702 -13.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.4590 T22: 0.4936 REMARK 3 T33: 0.4132 T12: -0.1422 REMARK 3 T13: 0.0106 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 7.2483 L22: 0.4641 REMARK 3 L33: 3.6941 L12: 0.4127 REMARK 3 L13: 0.8965 L23: -0.2832 REMARK 3 S TENSOR REMARK 3 S11: -0.3951 S12: 0.5684 S13: 0.0670 REMARK 3 S21: -0.3451 S22: 0.5556 S23: -0.2095 REMARK 3 S31: 0.8202 S32: -1.1053 S33: -0.3626 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 24 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2323 -9.8843 -17.7281 REMARK 3 T TENSOR REMARK 3 T11: 0.3998 T22: 0.2398 REMARK 3 T33: 0.2729 T12: -0.0133 REMARK 3 T13: -0.0213 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 1.6586 L22: 1.0811 REMARK 3 L33: 5.2074 L12: 0.6025 REMARK 3 L13: -1.5848 L23: -0.4827 REMARK 3 S TENSOR REMARK 3 S11: -0.0841 S12: -0.0002 S13: -0.0589 REMARK 3 S21: -0.2274 S22: 0.0296 S23: -0.0788 REMARK 3 S31: 0.3572 S32: -0.2000 S33: 0.0738 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 105 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0250 -4.8526 16.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.3717 REMARK 3 T33: 0.3373 T12: 0.0089 REMARK 3 T13: -0.0266 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.8204 L22: 2.6311 REMARK 3 L33: 6.4882 L12: 0.5600 REMARK 3 L13: -1.0372 L23: 2.2509 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: 0.1087 S13: 0.0796 REMARK 3 S21: 0.0071 S22: 0.1473 S23: 0.0010 REMARK 3 S31: 0.0199 S32: 0.0673 S33: -0.0645 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 154 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4083 -3.8047 22.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.4265 T22: 0.3628 REMARK 3 T33: 0.7456 T12: 0.1806 REMARK 3 T13: 0.0292 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.4635 L22: 6.7724 REMARK 3 L33: 3.2898 L12: 0.7069 REMARK 3 L13: -0.2142 L23: -4.4034 REMARK 3 S TENSOR REMARK 3 S11: 0.4742 S12: -0.0907 S13: -1.0719 REMARK 3 S21: 1.7978 S22: -0.4267 S23: 0.4187 REMARK 3 S31: -0.0027 S32: 0.5034 S33: -0.2854 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 165 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3791 -3.0239 19.0280 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.2368 REMARK 3 T33: 0.3595 T12: -0.0284 REMARK 3 T13: -0.0021 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 4.4000 L22: 4.2990 REMARK 3 L33: 5.0112 L12: -1.1722 REMARK 3 L13: -1.3788 L23: 3.7637 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.2564 S13: -0.0911 REMARK 3 S21: -0.1800 S22: -0.1449 S23: 0.1266 REMARK 3 S31: -0.2813 S32: 0.2503 S33: 0.2604 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 201 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0437 -9.5288 24.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.6420 T22: 0.4250 REMARK 3 T33: 0.3787 T12: 0.0467 REMARK 3 T13: 0.0167 T23: 0.1165 REMARK 3 L TENSOR REMARK 3 L11: 5.9130 L22: 4.8713 REMARK 3 L33: 4.4136 L12: -3.6412 REMARK 3 L13: -3.4291 L23: 4.6227 REMARK 3 S TENSOR REMARK 3 S11: -0.3840 S12: -0.2183 S13: -0.4733 REMARK 3 S21: 1.0001 S22: 0.8892 S23: 0.1306 REMARK 3 S31: 1.1424 S32: 0.5667 S33: -0.5378 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 213 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5022 0.3879 35.8096 REMARK 3 T TENSOR REMARK 3 T11: 0.7948 T22: 1.3487 REMARK 3 T33: 0.2479 T12: 0.4292 REMARK 3 T13: 0.1391 T23: -0.2849 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 1.9999 REMARK 3 L33: 3.0210 L12: 2.0004 REMARK 3 L13: 7.8236 L23: -4.5703 REMARK 3 S TENSOR REMARK 3 S11: -1.6923 S12: -0.8720 S13: 0.1541 REMARK 3 S21: 0.8924 S22: 0.9231 S23: 3.1238 REMARK 3 S31: -1.4239 S32: -1.0614 S33: 0.6316 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7023 13.4839 -11.9234 REMARK 3 T TENSOR REMARK 3 T11: 0.6887 T22: 0.4258 REMARK 3 T33: 0.3596 T12: -0.1037 REMARK 3 T13: -0.0388 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 4.1587 L22: 3.1160 REMARK 3 L33: 3.5422 L12: 0.1570 REMARK 3 L13: -0.2437 L23: -1.9032 REMARK 3 S TENSOR REMARK 3 S11: 0.4429 S12: -0.3554 S13: 0.2805 REMARK 3 S21: 0.4762 S22: -0.2304 S23: -0.1785 REMARK 3 S31: -0.7052 S32: -0.1382 S33: -0.1682 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7479 8.2508 -19.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.3974 T22: 0.3606 REMARK 3 T33: 0.3328 T12: 0.0882 REMARK 3 T13: -0.0257 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 5.9136 L22: 6.4419 REMARK 3 L33: 6.8356 L12: -0.4067 REMARK 3 L13: -1.9062 L23: -2.8037 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: 0.3373 S13: 0.0427 REMARK 3 S21: 0.3922 S22: 0.3214 S23: 0.5754 REMARK 3 S31: -0.4966 S32: -0.8131 S33: -0.1754 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 61 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2178 9.7570 -17.8979 REMARK 3 T TENSOR REMARK 3 T11: 0.4493 T22: 0.3724 REMARK 3 T33: 0.2868 T12: 0.0075 REMARK 3 T13: -0.0101 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.0588 L22: 5.6634 REMARK 3 L33: 3.6993 L12: 0.1174 REMARK 3 L13: -1.4135 L23: -1.3779 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.2038 S13: 0.3014 REMARK 3 S21: 0.5993 S22: 0.1465 S23: 0.2442 REMARK 3 S31: -0.4454 S32: -0.2444 S33: -0.2377 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 119 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9725 15.1447 0.0119 REMARK 3 T TENSOR REMARK 3 T11: 0.7985 T22: 0.5357 REMARK 3 T33: 0.7105 T12: 0.0184 REMARK 3 T13: -0.0305 T23: 0.1435 REMARK 3 L TENSOR REMARK 3 L11: 0.7281 L22: 2.6608 REMARK 3 L33: 5.4260 L12: -1.1326 REMARK 3 L13: -1.4307 L23: 3.6598 REMARK 3 S TENSOR REMARK 3 S11: 0.5011 S12: 0.3648 S13: 0.2106 REMARK 3 S21: -0.9585 S22: -0.5809 S23: -0.0843 REMARK 3 S31: 0.2809 S32: -1.3078 S33: -0.2243 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 132 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2138 7.0288 19.6843 REMARK 3 T TENSOR REMARK 3 T11: 0.4327 T22: 0.2112 REMARK 3 T33: 0.4778 T12: -0.0276 REMARK 3 T13: 0.0190 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 5.2682 L22: 5.4189 REMARK 3 L33: 3.6265 L12: -0.6320 REMARK 3 L13: -3.1258 L23: 2.6973 REMARK 3 S TENSOR REMARK 3 S11: -0.3586 S12: -0.0088 S13: -0.5078 REMARK 3 S21: 0.7881 S22: 0.5777 S23: 0.6580 REMARK 3 S31: -0.3274 S32: -0.3883 S33: 0.5191 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 158 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7503 8.8711 13.7233 REMARK 3 T TENSOR REMARK 3 T11: 0.4128 T22: 0.3691 REMARK 3 T33: 0.3977 T12: -0.0343 REMARK 3 T13: -0.0124 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 7.6658 L22: 1.8685 REMARK 3 L33: 1.3915 L12: 1.8990 REMARK 3 L13: 0.9986 L23: 0.4801 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: 0.4082 S13: 0.6791 REMARK 3 S21: 0.0868 S22: 0.1019 S23: -0.0267 REMARK 3 S31: -0.1780 S32: 0.3591 S33: 0.0122 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 228 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2063 5.7752 36.4791 REMARK 3 T TENSOR REMARK 3 T11: 1.7701 T22: 0.6397 REMARK 3 T33: 0.7054 T12: 0.3139 REMARK 3 T13: 0.1752 T23: -0.1023 REMARK 3 L TENSOR REMARK 3 L11: 3.6976 L22: 2.3701 REMARK 3 L33: 2.4526 L12: 1.5403 REMARK 3 L13: 1.8236 L23: 2.3852 REMARK 3 S TENSOR REMARK 3 S11: 0.2632 S12: 1.0291 S13: -1.0908 REMARK 3 S21: 0.8021 S22: 2.6959 S23: -2.9420 REMARK 3 S31: 1.1307 S32: 2.4649 S33: -2.6452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122157. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.963 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 66.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.18200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7QNY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 465 LYS H 141 REMARK 465 SER H 142 REMARK 465 THR H 143 REMARK 465 SER H 144 REMARK 465 GLY H 145 REMARK 465 ASP H 229 REMARK 465 LYS H 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU L 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA L 146 O HOH L 401 1.95 REMARK 500 O GLU L 201 O HOH L 402 2.09 REMARK 500 O ASN L 173 O3 GOL L 302 2.17 REMARK 500 OE1 GLN L 111 O2 GOL L 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 406 O HOH H 506 2545 2.17 REMARK 500 OD2 ASP L 154 OH TYR H 110 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 28 -82.55 -139.17 REMARK 500 ASN L 33 44.28 -99.34 REMARK 500 VAL L 53 -49.33 71.42 REMARK 500 ALA L 86 -171.35 -172.51 REMARK 500 ALA L 94 18.51 -144.69 REMARK 500 ASN L 96 12.72 51.92 REMARK 500 PRO L 144 -169.54 -72.93 REMARK 500 ASP L 154 -110.83 51.75 REMARK 500 VAL H 48 -61.95 -105.11 REMARK 500 ASP H 156 72.68 58.16 REMARK 500 PRO H 159 -155.77 -96.91 REMARK 500 SER H 199 9.27 -69.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZFD RELATED DB: PDB REMARK 900 RELATED ID: 7ZFE RELATED DB: PDB DBREF 7ZFF L 1 215 PDB 7ZFF 7ZFF 1 215 DBREF 7ZFF H 1 230 PDB 7ZFF 7ZFF 1 230 SEQRES 1 L 215 GLN SER VAL VAL THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 215 LEU GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 L 215 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 215 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE PHE GLU SEQRES 5 L 215 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 215 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 L 215 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 215 SER TYR ALA GLY ASN LYS GLY VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ASN PRO THR SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER SEQRES 1 H 230 GLU VAL GLN LEU LEU GLU THR GLY GLY GLY LEU VAL GLN SEQRES 2 H 230 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 230 PHE PRO PHE ASP ASP TYR ALA ILE HIS TRP VAL ARG LEU SEQRES 4 H 230 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE SER SEQRES 5 H 230 TRP ASP SER GLY SER ILE GLY TYR ALA ASP SER VAL LYS SEQRES 6 H 230 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 230 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 230 ALA LEU TYR TYR CYS ALA LYS GLY ALA PHE PRO GLY TYR SEQRES 9 H 230 SER SER GLY TRP TYR TYR GLY LEU ASP VAL TRP GLY GLN SEQRES 10 H 230 GLY ALA THR VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 230 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 230 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 230 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 230 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 230 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 230 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 230 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 230 ARG VAL GLU PRO LYS SER CYS ASP LYS HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET GOL L 304 6 HET GOL L 305 6 HET GOL H 401 6 HET GOL H 402 6 HET GOL H 403 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *55(H2 O) HELIX 1 AA1 GLN L 81 GLU L 85 5 5 HELIX 2 AA2 SER L 124 ALA L 130 1 7 HELIX 3 AA3 THR L 184 LYS L 189 1 6 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 105 TYR H 110 1 6 HELIX 6 AA6 SER H 168 ALA H 170 5 3 HELIX 7 AA7 SER H 199 LEU H 201 5 3 HELIX 8 AA8 LYS H 213 ASN H 216 5 4 SHEET 1 AA1 5 SER L 9 SER L 13 0 SHEET 2 AA1 5 THR L 104 LEU L 109 1 O LYS L 105 N ALA L 10 SHEET 3 AA1 5 ALA L 86 TYR L 93 -1 N ALA L 86 O LEU L 106 SHEET 4 AA1 5 VAL L 35 GLN L 40 -1 N SER L 36 O SER L 91 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AA2 4 SER L 9 SER L 13 0 SHEET 2 AA2 4 THR L 104 LEU L 109 1 O LYS L 105 N ALA L 10 SHEET 3 AA2 4 ALA L 86 TYR L 93 -1 N ALA L 86 O LEU L 106 SHEET 4 AA2 4 GLY L 98 PHE L 100 -1 O VAL L 99 N SER L 92 SHEET 1 AA3 3 VAL L 18 THR L 23 0 SHEET 2 AA3 3 THR L 72 VAL L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA3 3 PHE L 64 SER L 69 -1 N SER L 67 O SER L 74 SHEET 1 AA4 4 THR L 117 PHE L 121 0 SHEET 2 AA4 4 ALA L 133 PHE L 142 -1 O LEU L 138 N THR L 119 SHEET 3 AA4 4 TYR L 175 LEU L 183 -1 O ALA L 177 N ILE L 139 SHEET 4 AA4 4 VAL L 162 THR L 164 -1 N GLU L 163 O TYR L 180 SHEET 1 AA5 4 THR L 117 PHE L 121 0 SHEET 2 AA5 4 ALA L 133 PHE L 142 -1 O LEU L 138 N THR L 119 SHEET 3 AA5 4 TYR L 175 LEU L 183 -1 O ALA L 177 N ILE L 139 SHEET 4 AA5 4 SER L 168 LYS L 169 -1 N SER L 168 O ALA L 176 SHEET 1 AA6 4 SER L 156 PRO L 157 0 SHEET 2 AA6 4 THR L 148 ALA L 153 -1 N ALA L 153 O SER L 156 SHEET 3 AA6 4 TYR L 194 HIS L 200 -1 O GLN L 197 N ALA L 150 SHEET 4 AA6 4 SER L 203 VAL L 209 -1 O SER L 203 N HIS L 200 SHEET 1 AA7 4 GLN H 3 THR H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O SER H 21 N THR H 7 SHEET 3 AA7 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 AA8 6 GLY H 10 VAL H 12 0 SHEET 2 AA8 6 ALA H 119 VAL H 123 1 O THR H 122 N GLY H 10 SHEET 3 AA8 6 ALA H 92 LYS H 98 -1 N ALA H 92 O VAL H 121 SHEET 4 AA8 6 ILE H 34 LEU H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA8 6 ILE H 58 TYR H 60 -1 O GLY H 59 N SER H 50 SHEET 1 AA9 4 GLY H 10 VAL H 12 0 SHEET 2 AA9 4 ALA H 119 VAL H 123 1 O THR H 122 N GLY H 10 SHEET 3 AA9 4 ALA H 92 LYS H 98 -1 N ALA H 92 O VAL H 121 SHEET 4 AA9 4 VAL H 114 TRP H 115 -1 O VAL H 114 N LYS H 98 SHEET 1 AB1 4 SER H 132 LEU H 136 0 SHEET 2 AB1 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AB1 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AB1 4 VAL H 175 HIS H 176 -1 N HIS H 176 O VAL H 193 SHEET 1 AB2 4 SER H 132 LEU H 136 0 SHEET 2 AB2 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AB2 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AB2 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AB3 3 THR H 163 TRP H 166 0 SHEET 2 AB3 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AB3 3 THR H 217 VAL H 223 -1 O VAL H 223 N TYR H 206 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 2 CYS L 137 CYS L 196 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 4 CYS H 152 CYS H 208 1555 1555 2.04 CISPEP 1 TYR L 143 PRO L 144 0 1.73 CISPEP 2 PHE H 158 PRO H 159 0 -4.00 CISPEP 3 GLU H 160 PRO H 161 0 -3.57 CRYST1 63.830 49.380 72.290 90.00 115.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015667 0.000000 0.007504 0.00000 SCALE2 0.000000 0.020251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015338 0.00000