HEADER TRANSCRIPTION 01-APR-22 7ZFG TITLE VDR COMPLEX WITH AROMATIC D-RING ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 11 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 12 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, AGONIST, VITAMIN D RECEPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 2 31-JAN-24 7ZFG 1 REMARK REVDAT 1 23-NOV-22 7ZFG 0 JRNL AUTH S.SEOANE,P.GOGOI,A.ZARATE-RUIZ,C.PELUSO-ILTIS,S.PETERS, JRNL AUTH 2 T.GUIBERTEAU,M.A.MAESTRO,R.PEREZ-FERNANDEZ,N.ROCHEL, JRNL AUTH 3 A.MOURINO JRNL TITL DESIGN, SYNTHESIS, BIOLOGICAL ACTIVITY, AND STRUCTURAL JRNL TITL 2 ANALYSIS OF NOVEL DES-C-RING AND AROMATIC-D-RING ANALOGUES JRNL TITL 3 OF 1 ALPHA ,25-DIHYDROXYVITAMIN D 3. JRNL REF J.MED.CHEM. V. 65 13112 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 36166643 JRNL DOI 10.1021/ACS.JMEDCHEM.2C00900 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 5.2400 1.00 1393 155 0.2073 0.2591 REMARK 3 2 5.2400 - 4.1600 1.00 1263 140 0.1679 0.2287 REMARK 3 3 4.1600 - 3.6300 1.00 1237 138 0.1779 0.2388 REMARK 3 4 3.6300 - 3.3000 0.99 1215 135 0.2090 0.2502 REMARK 3 5 3.3000 - 3.0700 1.00 1219 135 0.2146 0.3131 REMARK 3 6 3.0700 - 2.8800 1.00 1199 133 0.2268 0.3492 REMARK 3 7 2.8800 - 2.7400 1.00 1191 132 0.2401 0.3001 REMARK 3 8 2.7400 - 2.6200 0.97 1157 129 0.2569 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.339 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2073 REMARK 3 ANGLE : 1.005 2793 REMARK 3 CHIRALITY : 0.052 311 REMARK 3 PLANARITY : 0.007 352 REMARK 3 DIHEDRAL : 24.263 795 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8912 39.3200 7.5390 REMARK 3 T TENSOR REMARK 3 T11: 0.7701 T22: 0.8329 REMARK 3 T33: 0.8567 T12: -0.1456 REMARK 3 T13: 0.0536 T23: -0.1611 REMARK 3 L TENSOR REMARK 3 L11: 7.1942 L22: 5.6992 REMARK 3 L33: 2.4564 L12: -2.9164 REMARK 3 L13: -2.5371 L23: -0.7176 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.5416 S13: 1.2273 REMARK 3 S21: 0.2835 S22: -0.3372 S23: -0.3491 REMARK 3 S31: -1.4278 S32: -0.3231 S33: 0.1862 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8376 25.7331 -10.4636 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.5254 REMARK 3 T33: 0.5017 T12: -0.0339 REMARK 3 T13: 0.0321 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 7.4923 L22: 4.5846 REMARK 3 L33: 9.3722 L12: -1.0912 REMARK 3 L13: -2.3023 L23: 3.9670 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.0550 S13: -0.0591 REMARK 3 S21: -0.2961 S22: -0.6931 S23: 1.1283 REMARK 3 S31: -0.2243 S32: -0.7746 S33: 0.5923 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5457 23.6845 -1.8929 REMARK 3 T TENSOR REMARK 3 T11: 0.7165 T22: 0.7012 REMARK 3 T33: 0.6347 T12: -0.1101 REMARK 3 T13: 0.1040 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 7.1911 L22: 4.5860 REMARK 3 L33: 8.1740 L12: 2.1652 REMARK 3 L13: -3.1798 L23: -2.7324 REMARK 3 S TENSOR REMARK 3 S11: 0.4262 S12: -1.4919 S13: -0.0385 REMARK 3 S21: 0.8935 S22: -0.7614 S23: 0.9144 REMARK 3 S31: 0.5095 S32: 0.4142 S33: 0.3708 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4568 9.6189 -8.8129 REMARK 3 T TENSOR REMARK 3 T11: 1.3153 T22: 1.0169 REMARK 3 T33: 0.6958 T12: -0.2337 REMARK 3 T13: -0.0154 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.8332 L22: 8.8797 REMARK 3 L33: 4.9914 L12: -2.0305 REMARK 3 L13: 2.7241 L23: -3.6880 REMARK 3 S TENSOR REMARK 3 S11: 1.0376 S12: 0.5548 S13: -1.1699 REMARK 3 S21: 0.6835 S22: -0.3470 S23: 0.7829 REMARK 3 S31: 2.0567 S32: -1.2382 S33: -0.4466 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4163 29.3298 8.6584 REMARK 3 T TENSOR REMARK 3 T11: 0.6959 T22: 0.8500 REMARK 3 T33: 0.4641 T12: -0.1550 REMARK 3 T13: -0.0228 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 5.4375 L22: 5.3098 REMARK 3 L33: 5.2048 L12: -1.0144 REMARK 3 L13: -3.0421 L23: 0.9473 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.9169 S13: 0.3143 REMARK 3 S21: 0.6261 S22: 0.1754 S23: -0.1430 REMARK 3 S31: 0.0133 S32: 0.5707 S33: -0.1548 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8033 21.6591 -5.6487 REMARK 3 T TENSOR REMARK 3 T11: 0.6199 T22: 0.6144 REMARK 3 T33: 0.5978 T12: -0.0401 REMARK 3 T13: -0.0576 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 6.7546 L22: 3.3845 REMARK 3 L33: 2.7030 L12: -1.6202 REMARK 3 L13: -4.2780 L23: 0.8387 REMARK 3 S TENSOR REMARK 3 S11: 0.0690 S12: -0.6123 S13: 0.0263 REMARK 3 S21: 0.4322 S22: 0.1634 S23: -0.4187 REMARK 3 S31: 0.3088 S32: 1.4079 S33: -0.2691 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 695 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2612 38.0004 -15.6889 REMARK 3 T TENSOR REMARK 3 T11: 0.8041 T22: 0.6304 REMARK 3 T33: 0.9489 T12: -0.0647 REMARK 3 T13: 0.1737 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 6.3510 L22: 2.7105 REMARK 3 L33: 7.1071 L12: 2.5293 REMARK 3 L13: -3.6303 L23: 1.4827 REMARK 3 S TENSOR REMARK 3 S11: 1.2519 S12: -0.3811 S13: 0.1639 REMARK 3 S21: -1.0103 S22: -0.4238 S23: -0.7267 REMARK 3 S31: -2.6162 S32: 1.7383 S33: -0.3761 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : 0.98 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2HC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAACETATE 2.5M, BISTRIS 0.1M, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.61333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.30667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.46000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.15333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.76667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.61333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.30667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.15333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.46000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 ARG A 251 REMARK 465 VAL A 452 REMARK 465 SER A 453 REMARK 465 GLU B 696 REMARK 465 GLY B 697 REMARK 465 SER B 698 REMARK 465 PRO B 699 REMARK 465 SER B 700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 402 O HOH A 601 2.16 REMARK 500 OG SER A 450 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 321 32.85 -89.19 REMARK 500 ILE A 325 -34.60 101.02 REMARK 500 LEU A 367 43.89 -83.90 REMARK 500 ASP A 376 65.78 -104.72 REMARK 500 ARG A 403 -0.94 -146.33 REMARK 500 LEU A 404 12.64 -142.15 REMARK 500 SER A 431 -9.13 -57.52 REMARK 500 LEU B 694 20.86 -73.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZFG A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 7ZFG B 686 700 UNP Q15788 NCOA1_HUMAN 686 700 SEQADV 7ZFG GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 7ZFG SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 7ZFG HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 7ZFG MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 15 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 2 B 15 PRO SER HET ACT A 501 4 HET IV5 A 502 36 HETNAM ACT ACETATE ION HETNAM IV5 (1R,3S,5Z)-4-METHYLIDENE-5-[(E)-9-METHYL-3-[3-(6- HETNAM 2 IV5 METHYL-6-OXIDANYL-HEPTYL)PHENYL]-9-OXIDANYL-DEC-2- HETNAM 3 IV5 ENYLIDENE]CYCLOHEXANE-1,3-DIOL FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 IV5 C32 H50 O4 FORMUL 5 HOH *38(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 LYS A 274 1 21 HELIX 4 AA4 THR A 283 SER A 303 1 21 HELIX 5 AA5 ASP A 327 GLY A 332 5 6 HELIX 6 AA6 THR A 334 LEU A 351 1 18 HELIX 7 AA7 HIS A 354 LEU A 367 1 14 HELIX 8 AA8 VAL A 378 HIS A 399 1 22 HELIX 9 AA9 LEU A 404 PHE A 432 1 29 HELIX 10 AB1 GLN A 433 MET A 438 1 6 HELIX 11 AB2 THR A 441 PHE A 448 1 8 HELIX 12 AB3 HIS B 687 LEU B 694 1 8 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 CRYST1 65.830 65.830 264.920 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015191 0.008770 0.000000 0.00000 SCALE2 0.000000 0.017541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003775 0.00000