HEADER HYDROLASE 04-APR-22 7ZGM TITLE PLANT N-GLYCAN SPECIFIC ALPHA-1,3-MANNOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 92 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B035DRAFT_03340GH92,GH92 FAMILY GLYCOSYL HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOCAEICOLA MASSILIENSIS B84634 = TIMONE 84634 SOURCE 3 = DSM 17679 = JCM 13223; SOURCE 4 ORGANISM_TAXID: 1121098; SOURCE 5 GENE: HMPREF1534_02484; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLANT N-GLYCANS, PNGASE, GUT MICROBIOTA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE,L.CROUCH,D.BOLAM REVDAT 3 31-JAN-24 7ZGM 1 REMARK REVDAT 2 28-SEP-22 7ZGM 1 JRNL REVDAT 1 07-SEP-22 7ZGM 0 JRNL AUTH L.I.CROUCH,P.A.URBANOWICZ,A.BASLE,Z.P.CAI,L.LIU,J.VOGLMEIR, JRNL AUTH 2 J.M.MELO DIAZ,S.T.BENEDICT,D.I.R.SPENCER,D.N.BOLAM JRNL TITL PLANT N -GLYCAN BREAKDOWN BY HUMAN GUT BACTEROIDES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 68119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36122227 JRNL DOI 10.1073/PNAS.2208168119 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0326 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 134810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.993 REMARK 3 FREE R VALUE TEST SET COUNT : 6731 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9161 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 511 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93200 REMARK 3 B22 (A**2) : -0.79900 REMARK 3 B33 (A**2) : -0.13200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5879 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5211 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7955 ; 1.225 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12034 ; 0.444 ; 1.564 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 6.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 57 ;34.638 ;21.228 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 925 ;12.849 ;10.173 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6879 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1215 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 49 ; 0.234 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2858 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 497 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.280 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 1.954 ; 1.830 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2833 ; 1.947 ; 1.830 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3543 ; 2.398 ; 2.754 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3544 ; 2.398 ; 2.756 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3046 ; 2.721 ; 2.110 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3043 ; 2.700 ; 2.110 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4399 ; 3.213 ; 3.055 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4400 ; 3.213 ; 3.056 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11090 ; 2.162 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ZGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 66.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 7.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 66.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.03400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WVX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM POTASSIUM CITRATE AND 20% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.97050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.29050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.29050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.97050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 530 REMARK 465 SER A 531 REMARK 465 HIS A 732 REMARK 465 HIS A 733 REMARK 465 HIS A 734 REMARK 465 HIS A 735 REMARK 465 HIS A 736 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TRP A 207 O HOH A 904 1.48 REMARK 500 H SER A 121 O HOH A 907 1.50 REMARK 500 O HOH A 1191 O HOH A 1375 1.93 REMARK 500 O HOH A 1375 O HOH A 1500 2.07 REMARK 500 OD1 ASP A 638 O HOH A 901 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 67 -130.25 -133.32 REMARK 500 SER A 74 135.59 75.91 REMARK 500 CYS A 94 -22.07 -153.45 REMARK 500 LEU A 97 -68.55 -109.08 REMARK 500 VAL A 100 85.18 64.24 REMARK 500 ALA A 275 -126.58 -133.75 REMARK 500 THR A 347 69.95 63.11 REMARK 500 ALA A 356 -35.98 -145.78 REMARK 500 MET A 399 -150.99 74.07 REMARK 500 ASP A 551 56.92 -150.48 REMARK 500 GLN A 581 67.54 66.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 54 0.10 SIDE CHAIN REMARK 500 ARG A 117 0.14 SIDE CHAIN REMARK 500 ARG A 413 0.10 SIDE CHAIN REMARK 500 ARG A 480 0.09 SIDE CHAIN REMARK 500 ARG A 493 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1546 DISTANCE = 6.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 802 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 71 O REMARK 620 2 THR A 175 O 96.1 REMARK 620 3 HOH A1217 O 97.6 164.7 REMARK 620 4 HOH A1412 O 148.9 77.4 94.1 REMARK 620 5 HOH A1462 O 95.7 110.6 74.8 60.0 REMARK 620 6 HOH A1468 O 124.8 92.3 74.3 86.1 131.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 801 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 97 O REMARK 620 2 ASP A 99 OD1 83.7 REMARK 620 3 ASN A 204 OD1 173.5 100.7 REMARK 620 4 GLN A 210 OE1 122.9 91.2 52.6 REMARK 620 5 HOH A1188 O 77.4 59.7 109.0 144.1 REMARK 620 6 HOH A1241 O 82.1 157.5 92.2 82.1 132.8 REMARK 620 7 HOH A1326 O 118.5 108.6 64.9 117.0 61.6 93.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 811 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 121 O REMARK 620 2 HOH A 907 O 84.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 122 O REMARK 620 2 GLU A 125 O 81.8 REMARK 620 3 HOH A1138 O 96.6 86.4 REMARK 620 4 HOH A1373 O 88.9 98.3 173.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 812 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 161 O REMARK 620 2 MET A 245 O 88.9 REMARK 620 3 HOH A1143 O 78.7 146.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 814 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 161 O REMARK 620 2 PHE A 243 O 146.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 808 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 204 OD1 REMARK 620 2 VAL A 208 O 114.5 REMARK 620 3 GLN A 210 OE1 66.9 119.3 REMARK 620 4 HOH A 904 O 147.8 74.3 138.2 REMARK 620 5 HOH A1241 O 107.8 137.5 80.1 68.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 806 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 259 OG1 REMARK 620 2 ILE A 322 O 93.3 REMARK 620 3 ASP A 324 OD1 142.9 120.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 815 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 346 OG REMARK 620 2 GLN A 379 OE1 135.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 804 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 354 O REMARK 620 2 SER A 406 OG 107.6 REMARK 620 3 GLU A 410 OE1 114.7 131.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 355 O REMARK 620 2 PRO A 655 O 82.6 REMARK 620 3 VAL A 656 O 149.3 67.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 810 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 407 O REMARK 620 2 GLU A 410 OE1 109.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 817 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 594 O REMARK 620 2 GLU A 596 OE1 82.2 REMARK 620 3 ASP A 638 OD2 101.2 73.4 REMARK 620 4 HOH A 953 O 161.9 79.8 74.0 REMARK 620 5 HOH A1018 O 90.4 98.0 164.2 91.7 REMARK 620 6 HOH A1397 O 104.3 159.2 85.9 92.9 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 807 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 654 OH REMARK 620 2 HOH A1243 O 149.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 813 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 952 O REMARK 620 2 HOH A1359 O 81.0 REMARK 620 3 HOH A1515 O 110.2 135.2 REMARK 620 N 1 2 DBREF 7ZGM A 30 728 UNP U6RD63 U6RD63_9BACT 30 730 SEQADV 7ZGM LEU A 729 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM GLU A 730 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 731 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 732 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 733 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 734 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 735 UNP U6RD63 EXPRESSION TAG SEQADV 7ZGM HIS A 736 UNP U6RD63 EXPRESSION TAG SEQRES 1 A 709 THR ASP TYR THR LYS TYR VAL ASN THR PHE ILE GLY ALA SEQRES 2 A 709 ALA ASP ASN GLY HIS THR PHE PRO GLY ALA CYS ARG PRO SEQRES 3 A 709 PHE GLY MET ILE GLN THR SER PRO VAL THR GLY ALA VAL SEQRES 4 A 709 GLY TRP ARG TYR CYS SER GLU TYR VAL ASN SER ASP SER SEQRES 5 A 709 ILE ILE TRP GLY PHE THR GLN THR HIS LEU ASN GLY THR SEQRES 6 A 709 GLY CYS MET ASP LEU GLY ASP VAL LEU VAL MET PRO VAL SEQRES 7 A 709 THR GLY THR ARG THR ARG ALA TRP ASP ALA TYR ARG SER SEQRES 8 A 709 ARG PHE SER LYS LYS LEU GLU ALA ALA THR PRO GLY TYR SEQRES 9 A 709 TYR THR VAL GLU LEU THR GLU PRO ASN VAL LYS ALA GLU SEQRES 10 A 709 LEU THR ALA THR PRO HIS ALA ALA LEU HIS ARG TYR THR SEQRES 11 A 709 TYR HIS ASN ALA ASP SER ALA SER VAL LEU ILE ASP LEU SEQRES 12 A 709 GLN HIS GLY PRO THR TRP ASN GLU ASN GLN TYR HIS SER SEQRES 13 A 709 GLN VAL LYS GLU CYS GLU VAL ASN TRP GLU ASP ALA GLN SEQRES 14 A 709 THR LEU THR GLY HIS VAL ARG ASN SER VAL TRP VAL ASN SEQRES 15 A 709 GLN ASP TYR PHE PHE VAL MET LYS PHE ASN ARG PRO VAL SEQRES 16 A 709 THR ASP SER LEU TYR LEU PRO MET GLY GLU THR GLU LYS SEQRES 17 A 709 GLY LYS ARG ILE ILE ALA SER PHE ASP MET GLN PRO GLY SEQRES 18 A 709 GLU GLU LEU LEU MET LYS VAL ALA LEU SER THR THR GLY SEQRES 19 A 709 ILE GLU GLY ALA ARG LYS ASN MET GLU ALA GLU VAL PRO SEQRES 20 A 709 ALA TRP ASP PHE GLU GLY VAL LYS LYS THR ALA HIS ASP SEQRES 21 A 709 ASP TRP ASN SER TYR LEU SER ARG ILE ASP VAL THR GLY SEQRES 22 A 709 THR GLU ASP GLU LYS THR ASN PHE TYR THR CYS PHE TYR SEQRES 23 A 709 HIS ALA LEU ILE GLN PRO ASN GLN ILE SER ASP VAL ASP SEQRES 24 A 709 GLY LEU TYR ARG ASN ALA ALA ASP SER VAL VAL LYS ALA SEQRES 25 A 709 GLY THR GLY THR PHE TYR SER THR PHE SER LEU TRP ASP SEQRES 26 A 709 THR TYR ARG ALA ALA HIS PRO PHE TYR THR LEU MET VAL SEQRES 27 A 709 PRO GLU LYS VAL ASP GLY PHE VAL ASN SER LEU VAL GLU SEQRES 28 A 709 GLN SER GLU VAL GLN GLY PHE LEU PRO ILE TRP GLY LEU SEQRES 29 A 709 TRP GLY LYS GLU THR TYR THR MET VAL GLY ASN HIS GLY SEQRES 30 A 709 VAL SER VAL ILE ALA GLU ALA TYR ARG LYS GLY PHE ARG SEQRES 31 A 709 GLY PHE ASP ALA GLU ARG ALA PHE ASN ALA ILE LYS GLN SEQRES 32 A 709 THR GLN THR VAL SER HIS LYS GLN LYS SER ASP TRP GLU SEQRES 33 A 709 THR TYR MET LYS TYR GLY TYR PHE PRO THR ASP LEU ILE SEQRES 34 A 709 LYS THR GLU SER VAL SER SER SER LEU GLU SER VAL TYR SEQRES 35 A 709 ASP ASP TYR ALA ALA ALA ASP MET ALA LYS ARG MET GLY SEQRES 36 A 709 LYS THR GLU ASP ALA ALA TYR PHE SER LYS ARG ALA ASP SEQRES 37 A 709 PHE TYR LYS ASN LEU PHE ASP THR GLU THR GLN PHE MET SEQRES 38 A 709 ARG PRO ARG ASN SER ASN GLY THR TRP LYS THR PRO PHE SEQRES 39 A 709 ASN PRO SER GLN VAL ALA HIS ALA GLU SER THR GLY GLY SEQRES 40 A 709 ASP TYR THR GLU GLY ASN ALA TRP GLN TYR THR TRP HIS SEQRES 41 A 709 VAL GLN HIS ASP VAL PRO GLY LEU ILE SER LEU PHE GLY SEQRES 42 A 709 GLY GLU GLU PRO PHE LEU ASN LYS LEU ASP SER LEU PHE SEQRES 43 A 709 THR LEU LYS LEU GLU THR THR GLN ALA ASP VAL THR GLY SEQRES 44 A 709 LEU ILE GLY GLN TYR ALA HIS GLY ASN GLU PRO SER HIS SEQRES 45 A 709 HIS ILE THR TYR LEU TYR ALA LEU ALA GLY ARG PRO GLU SEQRES 46 A 709 ARG THR GLN GLU LEU VAL ARG GLU ILE PHE ASP THR GLN SEQRES 47 A 709 TYR HIS PRO GLU PRO ASP GLY LEU CYS GLY ASN ASP ASP SEQRES 48 A 709 CYS GLY GLN MET SER ALA TRP TYR MET PHE SER ALA MET SEQRES 49 A 709 GLY PHE TYR PRO VAL ASP PRO VAL SER GLY ASN TYR VAL SEQRES 50 A 709 PHE GLY ALA PRO GLN MET PRO LYS ILE VAL LEU HIS LEU SEQRES 51 A 709 ALA ASP GLY LYS THR PHE THR VAL ILE ALA ASP GLY ILE SEQRES 52 A 709 SER LYS GLU HIS LYS TYR ILE ASP SER ILE THR LEU ASN SEQRES 53 A 709 GLY GLU PRO TYR THR LYS ASN TYR ILE SER HIS GLU ASP SEQRES 54 A 709 ILE LEU LYS GLY GLY THR LEU VAL TYR LYS MET LYS LEU SEQRES 55 A 709 GLU HIS HIS HIS HIS HIS HIS HET K A 801 1 HET K A 802 1 HET K A 803 1 HET NA A 804 1 HET NA A 805 1 HET NA A 806 1 HET NA A 807 1 HET NA A 808 1 HET NA A 809 1 HET NA A 810 1 HET NA A 811 1 HET NA A 812 1 HET NA A 813 1 HET NA A 814 1 HET NA A 815 1 HET NA A 816 1 HET CA A 817 1 HETNAM K POTASSIUM ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION FORMUL 2 K 3(K 1+) FORMUL 5 NA 13(NA 1+) FORMUL 18 CA CA 2+ FORMUL 19 HOH *646(H2 O) HELIX 1 AA1 ASP A 31 VAL A 36 5 6 HELIX 2 AA2 ASN A 177 HIS A 182 1 6 HELIX 3 AA3 GLY A 261 VAL A 273 1 13 HELIX 4 AA4 ASP A 277 SER A 294 1 18 HELIX 5 AA5 THR A 301 ILE A 317 1 17 HELIX 6 AA6 SER A 349 TYR A 354 1 6 HELIX 7 AA7 ALA A 356 VAL A 365 1 10 HELIX 8 AA8 VAL A 365 GLY A 384 1 20 HELIX 9 AA9 HIS A 403 LYS A 414 1 12 HELIX 10 AB1 ASP A 420 VAL A 434 1 15 HELIX 11 AB2 ASP A 441 GLY A 449 1 9 HELIX 12 AB3 GLU A 459 MET A 481 1 23 HELIX 13 AB4 LYS A 483 ASP A 495 1 13 HELIX 14 AB5 PHE A 496 ASN A 499 5 4 HELIX 15 AB6 ASN A 540 THR A 545 1 6 HELIX 16 AB7 ASP A 551 GLY A 560 1 10 HELIX 17 AB8 GLY A 561 PHE A 573 1 13 HELIX 18 AB9 ASN A 595 HIS A 599 5 5 HELIX 19 AC1 HIS A 600 THR A 602 5 3 HELIX 20 AC2 TYR A 603 ALA A 608 1 6 HELIX 21 AC3 ARG A 610 GLN A 625 1 16 HELIX 22 AC4 GLY A 640 MET A 651 1 12 HELIX 23 AC5 ASP A 657 SER A 660 5 4 HELIX 24 AC6 HIS A 714 LYS A 719 1 6 SHEET 1 AA1 4 ALA A 52 CYS A 53 0 SHEET 2 AA1 4 GLN A 60 GLY A 66 -1 O THR A 61 N ALA A 52 SHEET 3 AA1 4 ILE A 82 THR A 86A-1 O TRP A 84 N VAL A 64 SHEET 4 AA1 4 SER A 118 ARG A 119 -1 O SER A 118 N ILE A 83 SHEET 1 AA2 4 LEU A 101 VAL A 105 0 SHEET 2 AA2 4 SER A 165 ASP A 169 -1 O ASP A 169 N LEU A 101 SHEET 3 AA2 4 ARG A 238 SER A 242 -1 O ILE A 239 N ILE A 168 SHEET 4 AA2 4 ASP A 224 TYR A 227 -1 N ASP A 224 O SER A 242 SHEET 1 AA3 8 ALA A 126 THR A 128 0 SHEET 2 AA3 8 TYR A 131 LEU A 136 -1 O TYR A 131 N THR A 128 SHEET 3 AA3 8 VAL A 141 ALA A 147 -1 O LEU A 145 N TYR A 132 SHEET 4 AA3 8 ALA A 151 TYR A 158 -1 O ARG A 155 N GLU A 144 SHEET 5 AA3 8 GLU A 249 SER A 258 -1 O MET A 253 N HIS A 154 SHEET 6 AA3 8 GLN A 210 PHE A 218 -1 N LYS A 217 O LYS A 254 SHEET 7 AA3 8 THR A 197 ASN A 204 -1 N LEU A 198 O MET A 216 SHEET 8 AA3 8 VAL A 185 ASP A 194 -1 N LYS A 186 O ARG A 203 SHEET 1 AA4 6 ILE A 296 THR A 299 0 SHEET 2 AA4 6 LYS A 672 HIS A 676 -1 O LYS A 672 N THR A 299 SHEET 3 AA4 6 THR A 682 ASP A 688 -1 O VAL A 685 N ILE A 673 SHEET 4 AA4 6 GLY A 721 LYS A 728 1 O TYR A 725 N ILE A 686 SHEET 5 AA4 6 TYR A 696 LEU A 702 -1 N ASP A 698 O LYS A 726 SHEET 6 AA4 6 GLU A 705 PRO A 706 -1 O GLU A 705 N LEU A 702 SHEET 1 AA5 2 ASN A 320 GLN A 321 0 SHEET 2 AA5 2 TYR A 345 SER A 346 -1 O SER A 346 N ASN A 320 SHEET 1 AA6 2 LEU A 328 ARG A 330 0 SHEET 2 AA6 2 VAL A 336 LYS A 338 -1 O VAL A 337 N TYR A 329 SHEET 1 AA7 2 GLY A 390 LEU A 391 0 SHEET 2 AA7 2 LYS A 394 GLU A 395 -1 O LYS A 394 N LEU A 391 SHEET 1 AA8 2 PHE A 501 ASP A 502 0 SHEET 2 AA8 2 PHE A 507 MET A 508 -1 O PHE A 507 N ASP A 502 SHEET 1 AA9 2 LEU A 587 ILE A 588 0 SHEET 2 AA9 2 TYR A 591 ALA A 592 -1 O TYR A 591 N ILE A 588 SHEET 1 AB1 3 PHE A 653 TYR A 654 0 SHEET 2 AB1 3 ASN A 662 PHE A 665 -1 O VAL A 664 N TYR A 654 SHEET 3 AB1 3 TYR A 711 SER A 713 -1 O ILE A 712 N TYR A 663 SSBOND 1 CYS A 73 CYS A 94 1555 1555 2.06 LINK O ARG A 71 K K A 802 1555 1555 2.70 LINK O LEU A 97 K K A 801 1555 1555 2.72 LINK OD1 ASP A 99 K K A 801 1555 1555 2.71 LINK O SER A 121 NA NA A 811 1555 1555 2.55 LINK O LYS A 122 K K A 803 1555 1555 2.74 LINK O GLU A 125 K K A 803 1555 1555 2.76 LINK O ALA A 161 NA NA A 812 1555 1555 2.46 LINK O ALA A 161 NA NA A 814 1555 1555 2.58 LINK O THR A 175 K K A 802 1555 1555 2.75 LINK OD1 ASN A 204 K K A 801 1555 1555 3.37 LINK OD1 ASN A 204 NA NA A 808 1555 1555 2.45 LINK O VAL A 208 NA NA A 808 1555 1555 2.55 LINK OE1 GLN A 210 K K A 801 1555 1555 2.78 LINK OE1 GLN A 210 NA NA A 808 1555 1555 2.59 LINK O PHE A 243 NA NA A 814 1555 1555 2.48 LINK O MET A 245 NA NA A 812 1555 1555 2.47 LINK OG1 THR A 259 NA NA A 806 1555 1555 2.43 LINK O ILE A 322 NA NA A 806 1555 1555 2.56 LINK OD1 ASP A 324 NA NA A 806 1555 1555 2.60 LINK O TYR A 345 NA NA A 816 1555 1555 2.52 LINK OG SER A 346 NA NA A 815 1555 1555 2.36 LINK O TYR A 354 NA NA A 804 1555 1555 2.60 LINK O ARG A 355 NA NA A 805 1555 1555 2.61 LINK O HIS A 358 NA NA A 809 1555 1555 2.60 LINK OE1 GLN A 379 NA NA A 815 1555 1555 2.52 LINK OG SER A 406 NA NA A 804 1555 1555 2.43 LINK O VAL A 407 NA NA A 810 1555 1555 2.55 LINK OE1 GLU A 410 NA NA A 804 1555 1555 2.62 LINK OE1 GLU A 410 NA NA A 810 1555 1555 2.57 LINK O GLY A 594 CA CA A 817 1555 1555 2.42 LINK OE1 GLU A 596 CA CA A 817 1555 1555 2.41 LINK OD2 ASP A 638 CA CA A 817 1555 1555 2.37 LINK OH TYR A 654 NA NA A 807 1555 1555 2.36 LINK O PRO A 655 NA NA A 805 1555 1555 2.53 LINK O VAL A 656 NA NA A 805 1555 1555 3.18 LINK K K A 801 O HOH A1188 1555 1555 2.98 LINK K K A 801 O HOH A1241 1555 1555 2.67 LINK K K A 801 O HOH A1326 1555 1555 2.53 LINK K K A 802 O HOH A1217 1555 1555 2.72 LINK K K A 802 O HOH A1412 1555 1555 2.93 LINK K K A 802 O HOH A1462 1555 1555 2.94 LINK K K A 802 O HOH A1468 1555 1555 2.70 LINK K K A 803 O HOH A1138 1555 1555 2.85 LINK K K A 803 O HOH A1373 1555 1555 2.92 LINK NA NA A 807 O HOH A1243 1555 1555 2.82 LINK NA NA A 808 O HOH A 904 1555 1555 2.18 LINK NA NA A 808 O HOH A1241 1555 1555 2.96 LINK NA NA A 811 O HOH A 907 1555 1555 2.94 LINK NA NA A 812 O HOH A1143 1555 1555 2.82 LINK NA NA A 813 O HOH A 952 1555 1555 2.88 LINK NA NA A 813 O HOH A1359 1555 1555 2.70 LINK NA NA A 813 O HOH A1515 1555 1555 2.83 LINK CA CA A 817 O HOH A 953 1555 1555 3.06 LINK CA CA A 817 O HOH A1018 1555 1555 2.67 LINK CA CA A 817 O HOH A1397 1555 1555 2.16 CISPEP 1 GLN A 318 PRO A 319 0 -3.85 CISPEP 2 LYS A 437 GLN A 438 0 -6.83 CISPEP 3 LYS A 437 GLN A 438 0 -6.85 CISPEP 4 THR A 519 PRO A 520 0 -4.78 CRYST1 65.941 84.335 132.581 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007543 0.00000