HEADER PROTEIN FIBRIL 05-APR-22 7ZH7 TITLE CRYO-EM STRUCTURE OF EX VIVO AA AMYLOID FROM RENAL TISSUE OF A SHORT TITLE 2 HAIR CAT DECEASED IN A SHELTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERUM AMYLOID A PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELIS CATUS; SOURCE 3 ORGANISM_COMMON: DOMESTIC CAT; SOURCE 4 ORGANISM_TAXID: 9685 KEYWDS AA AMYLOIDOSIS, CAT, SERUM AMYLOID A, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR T.SCHULTE,A.CHAVES-SANJUAN,S.RICAGNO REVDAT 1 30-NOV-22 7ZH7 0 JRNL AUTH T.SCHULTE,A.CHAVES-SANJUAN,G.MAZZINI,V.SPERANZINI, JRNL AUTH 2 F.LAVATELLI,F.FERRI,C.PALIZZOTTO,M.MAZZA,P.MILANI, JRNL AUTH 3 M.NUVOLONE,A.C.VOGT,M.VOGEL,G.PALLADINI,G.MERLINI, JRNL AUTH 4 M.BOLOGNESI,S.FERRO,E.ZINI,S.RICAGNO JRNL TITL CRYO-EM STRUCTURE OF EX VIVO FIBRILS ASSOCIATED WITH EXTREME JRNL TITL 2 AA AMYLOIDOSIS PREVALENCE IN A CAT SHELTER. JRNL REF NAT COMMUN V. 13 7041 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36396658 JRNL DOI 10.1038/S41467-022-34743-2 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CTFFIND, COOT, ISOLDE, UCSF REMARK 3 CHIMERAX, PHENIX, RELION, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 76.700 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 65000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7ZH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122058. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : HELICAL ARRAY REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : AA AMYLOID EXTRACTED FROM REMARK 245 KIDNEY OF DECEASED CAT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : GLOW DISCHARGED FOR 30S AT 30MA REMARK 245 USING A GLOQUBE SYSTEM REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2652 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 600.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 120000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 PHE A 9 REMARK 465 CYS A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 95 REMARK 465 HIS A 96 REMARK 465 GLY A 97 REMARK 465 ALA A 98 REMARK 465 GLU A 99 REMARK 465 ASP A 100 REMARK 465 SER A 101 REMARK 465 LYS A 102 REMARK 465 ALA A 103 REMARK 465 ASP A 104 REMARK 465 GLN A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 ASN A 108 REMARK 465 GLU A 109 REMARK 465 TRP A 110 REMARK 465 GLY A 111 REMARK 465 ARG A 112 REMARK 465 SER A 113 REMARK 465 GLY A 114 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 PRO A 117 REMARK 465 ASN A 118 REMARK 465 HIS A 119 REMARK 465 TYR A 120 REMARK 465 ARG A 121 REMARK 465 PRO A 122 REMARK 465 GLU A 123 REMARK 465 GLY A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 ASP A 127 REMARK 465 LYS A 128 REMARK 465 TYR A 129 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 PHE B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 PHE B 9 REMARK 465 CYS B 10 REMARK 465 SER B 11 REMARK 465 LEU B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 GLY B 95 REMARK 465 HIS B 96 REMARK 465 GLY B 97 REMARK 465 ALA B 98 REMARK 465 GLU B 99 REMARK 465 ASP B 100 REMARK 465 SER B 101 REMARK 465 LYS B 102 REMARK 465 ALA B 103 REMARK 465 ASP B 104 REMARK 465 GLN B 105 REMARK 465 GLU B 106 REMARK 465 ALA B 107 REMARK 465 ASN B 108 REMARK 465 GLU B 109 REMARK 465 TRP B 110 REMARK 465 GLY B 111 REMARK 465 ARG B 112 REMARK 465 SER B 113 REMARK 465 GLY B 114 REMARK 465 LYS B 115 REMARK 465 ASP B 116 REMARK 465 PRO B 117 REMARK 465 ASN B 118 REMARK 465 HIS B 119 REMARK 465 TYR B 120 REMARK 465 ARG B 121 REMARK 465 PRO B 122 REMARK 465 GLU B 123 REMARK 465 GLY B 124 REMARK 465 LEU B 125 REMARK 465 PRO B 126 REMARK 465 ASP B 127 REMARK 465 LYS B 128 REMARK 465 TYR B 129 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LEU C 3 REMARK 465 PHE C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 LEU C 7 REMARK 465 VAL C 8 REMARK 465 PHE C 9 REMARK 465 CYS C 10 REMARK 465 SER C 11 REMARK 465 LEU C 12 REMARK 465 VAL C 13 REMARK 465 LEU C 14 REMARK 465 GLY C 15 REMARK 465 VAL C 16 REMARK 465 SER C 17 REMARK 465 SER C 18 REMARK 465 GLY C 95 REMARK 465 HIS C 96 REMARK 465 GLY C 97 REMARK 465 ALA C 98 REMARK 465 GLU C 99 REMARK 465 ASP C 100 REMARK 465 SER C 101 REMARK 465 LYS C 102 REMARK 465 ALA C 103 REMARK 465 ASP C 104 REMARK 465 GLN C 105 REMARK 465 GLU C 106 REMARK 465 ALA C 107 REMARK 465 ASN C 108 REMARK 465 GLU C 109 REMARK 465 TRP C 110 REMARK 465 GLY C 111 REMARK 465 ARG C 112 REMARK 465 SER C 113 REMARK 465 GLY C 114 REMARK 465 LYS C 115 REMARK 465 ASP C 116 REMARK 465 PRO C 117 REMARK 465 ASN C 118 REMARK 465 HIS C 119 REMARK 465 TYR C 120 REMARK 465 ARG C 121 REMARK 465 PRO C 122 REMARK 465 GLU C 123 REMARK 465 GLY C 124 REMARK 465 LEU C 125 REMARK 465 PRO C 126 REMARK 465 ASP C 127 REMARK 465 LYS C 128 REMARK 465 TYR C 129 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LEU D 3 REMARK 465 PHE D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 LEU D 7 REMARK 465 VAL D 8 REMARK 465 PHE D 9 REMARK 465 CYS D 10 REMARK 465 SER D 11 REMARK 465 LEU D 12 REMARK 465 VAL D 13 REMARK 465 LEU D 14 REMARK 465 GLY D 15 REMARK 465 VAL D 16 REMARK 465 SER D 17 REMARK 465 SER D 18 REMARK 465 GLY D 95 REMARK 465 HIS D 96 REMARK 465 GLY D 97 REMARK 465 ALA D 98 REMARK 465 GLU D 99 REMARK 465 ASP D 100 REMARK 465 SER D 101 REMARK 465 LYS D 102 REMARK 465 ALA D 103 REMARK 465 ASP D 104 REMARK 465 GLN D 105 REMARK 465 GLU D 106 REMARK 465 ALA D 107 REMARK 465 ASN D 108 REMARK 465 GLU D 109 REMARK 465 TRP D 110 REMARK 465 GLY D 111 REMARK 465 ARG D 112 REMARK 465 SER D 113 REMARK 465 GLY D 114 REMARK 465 LYS D 115 REMARK 465 ASP D 116 REMARK 465 PRO D 117 REMARK 465 ASN D 118 REMARK 465 HIS D 119 REMARK 465 TYR D 120 REMARK 465 ARG D 121 REMARK 465 PRO D 122 REMARK 465 GLU D 123 REMARK 465 GLY D 124 REMARK 465 LEU D 125 REMARK 465 PRO D 126 REMARK 465 ASP D 127 REMARK 465 LYS D 128 REMARK 465 TYR D 129 REMARK 465 MET E 1 REMARK 465 LYS E 2 REMARK 465 LEU E 3 REMARK 465 PHE E 4 REMARK 465 THR E 5 REMARK 465 GLY E 6 REMARK 465 LEU E 7 REMARK 465 VAL E 8 REMARK 465 PHE E 9 REMARK 465 CYS E 10 REMARK 465 SER E 11 REMARK 465 LEU E 12 REMARK 465 VAL E 13 REMARK 465 LEU E 14 REMARK 465 GLY E 15 REMARK 465 VAL E 16 REMARK 465 SER E 17 REMARK 465 SER E 18 REMARK 465 GLY E 95 REMARK 465 HIS E 96 REMARK 465 GLY E 97 REMARK 465 ALA E 98 REMARK 465 GLU E 99 REMARK 465 ASP E 100 REMARK 465 SER E 101 REMARK 465 LYS E 102 REMARK 465 ALA E 103 REMARK 465 ASP E 104 REMARK 465 GLN E 105 REMARK 465 GLU E 106 REMARK 465 ALA E 107 REMARK 465 ASN E 108 REMARK 465 GLU E 109 REMARK 465 TRP E 110 REMARK 465 GLY E 111 REMARK 465 ARG E 112 REMARK 465 SER E 113 REMARK 465 GLY E 114 REMARK 465 LYS E 115 REMARK 465 ASP E 116 REMARK 465 PRO E 117 REMARK 465 ASN E 118 REMARK 465 HIS E 119 REMARK 465 TYR E 120 REMARK 465 ARG E 121 REMARK 465 PRO E 122 REMARK 465 GLU E 123 REMARK 465 GLY E 124 REMARK 465 LEU E 125 REMARK 465 PRO E 126 REMARK 465 ASP E 127 REMARK 465 LYS E 128 REMARK 465 TYR E 129 REMARK 465 MET F 1 REMARK 465 LYS F 2 REMARK 465 LEU F 3 REMARK 465 PHE F 4 REMARK 465 THR F 5 REMARK 465 GLY F 6 REMARK 465 LEU F 7 REMARK 465 VAL F 8 REMARK 465 PHE F 9 REMARK 465 CYS F 10 REMARK 465 SER F 11 REMARK 465 LEU F 12 REMARK 465 VAL F 13 REMARK 465 LEU F 14 REMARK 465 GLY F 15 REMARK 465 VAL F 16 REMARK 465 SER F 17 REMARK 465 SER F 18 REMARK 465 GLY F 95 REMARK 465 HIS F 96 REMARK 465 GLY F 97 REMARK 465 ALA F 98 REMARK 465 GLU F 99 REMARK 465 ASP F 100 REMARK 465 SER F 101 REMARK 465 LYS F 102 REMARK 465 ALA F 103 REMARK 465 ASP F 104 REMARK 465 GLN F 105 REMARK 465 GLU F 106 REMARK 465 ALA F 107 REMARK 465 ASN F 108 REMARK 465 GLU F 109 REMARK 465 TRP F 110 REMARK 465 GLY F 111 REMARK 465 ARG F 112 REMARK 465 SER F 113 REMARK 465 GLY F 114 REMARK 465 LYS F 115 REMARK 465 ASP F 116 REMARK 465 PRO F 117 REMARK 465 ASN F 118 REMARK 465 HIS F 119 REMARK 465 TYR F 120 REMARK 465 ARG F 121 REMARK 465 PRO F 122 REMARK 465 GLU F 123 REMARK 465 GLY F 124 REMARK 465 LEU F 125 REMARK 465 PRO F 126 REMARK 465 ASP F 127 REMARK 465 LYS F 128 REMARK 465 TYR F 129 REMARK 465 MET G 1 REMARK 465 LYS G 2 REMARK 465 LEU G 3 REMARK 465 PHE G 4 REMARK 465 THR G 5 REMARK 465 GLY G 6 REMARK 465 LEU G 7 REMARK 465 VAL G 8 REMARK 465 PHE G 9 REMARK 465 CYS G 10 REMARK 465 SER G 11 REMARK 465 LEU G 12 REMARK 465 VAL G 13 REMARK 465 LEU G 14 REMARK 465 GLY G 15 REMARK 465 VAL G 16 REMARK 465 SER G 17 REMARK 465 SER G 18 REMARK 465 GLY G 95 REMARK 465 HIS G 96 REMARK 465 GLY G 97 REMARK 465 ALA G 98 REMARK 465 GLU G 99 REMARK 465 ASP G 100 REMARK 465 SER G 101 REMARK 465 LYS G 102 REMARK 465 ALA G 103 REMARK 465 ASP G 104 REMARK 465 GLN G 105 REMARK 465 GLU G 106 REMARK 465 ALA G 107 REMARK 465 ASN G 108 REMARK 465 GLU G 109 REMARK 465 TRP G 110 REMARK 465 GLY G 111 REMARK 465 ARG G 112 REMARK 465 SER G 113 REMARK 465 GLY G 114 REMARK 465 LYS G 115 REMARK 465 ASP G 116 REMARK 465 PRO G 117 REMARK 465 ASN G 118 REMARK 465 HIS G 119 REMARK 465 TYR G 120 REMARK 465 ARG G 121 REMARK 465 PRO G 122 REMARK 465 GLU G 123 REMARK 465 GLY G 124 REMARK 465 LEU G 125 REMARK 465 PRO G 126 REMARK 465 ASP G 127 REMARK 465 LYS G 128 REMARK 465 TYR G 129 REMARK 465 MET H 1 REMARK 465 LYS H 2 REMARK 465 LEU H 3 REMARK 465 PHE H 4 REMARK 465 THR H 5 REMARK 465 GLY H 6 REMARK 465 LEU H 7 REMARK 465 VAL H 8 REMARK 465 PHE H 9 REMARK 465 CYS H 10 REMARK 465 SER H 11 REMARK 465 LEU H 12 REMARK 465 VAL H 13 REMARK 465 LEU H 14 REMARK 465 GLY H 15 REMARK 465 VAL H 16 REMARK 465 SER H 17 REMARK 465 SER H 18 REMARK 465 GLY H 95 REMARK 465 HIS H 96 REMARK 465 GLY H 97 REMARK 465 ALA H 98 REMARK 465 GLU H 99 REMARK 465 ASP H 100 REMARK 465 SER H 101 REMARK 465 LYS H 102 REMARK 465 ALA H 103 REMARK 465 ASP H 104 REMARK 465 GLN H 105 REMARK 465 GLU H 106 REMARK 465 ALA H 107 REMARK 465 ASN H 108 REMARK 465 GLU H 109 REMARK 465 TRP H 110 REMARK 465 GLY H 111 REMARK 465 ARG H 112 REMARK 465 SER H 113 REMARK 465 GLY H 114 REMARK 465 LYS H 115 REMARK 465 ASP H 116 REMARK 465 PRO H 117 REMARK 465 ASN H 118 REMARK 465 HIS H 119 REMARK 465 TYR H 120 REMARK 465 ARG H 121 REMARK 465 PRO H 122 REMARK 465 GLU H 123 REMARK 465 GLY H 124 REMARK 465 LEU H 125 REMARK 465 PRO H 126 REMARK 465 ASP H 127 REMARK 465 LYS H 128 REMARK 465 TYR H 129 REMARK 465 MET I 1 REMARK 465 LYS I 2 REMARK 465 LEU I 3 REMARK 465 PHE I 4 REMARK 465 THR I 5 REMARK 465 GLY I 6 REMARK 465 LEU I 7 REMARK 465 VAL I 8 REMARK 465 PHE I 9 REMARK 465 CYS I 10 REMARK 465 SER I 11 REMARK 465 LEU I 12 REMARK 465 VAL I 13 REMARK 465 LEU I 14 REMARK 465 GLY I 15 REMARK 465 VAL I 16 REMARK 465 SER I 17 REMARK 465 SER I 18 REMARK 465 GLY I 95 REMARK 465 HIS I 96 REMARK 465 GLY I 97 REMARK 465 ALA I 98 REMARK 465 GLU I 99 REMARK 465 ASP I 100 REMARK 465 SER I 101 REMARK 465 LYS I 102 REMARK 465 ALA I 103 REMARK 465 ASP I 104 REMARK 465 GLN I 105 REMARK 465 GLU I 106 REMARK 465 ALA I 107 REMARK 465 ASN I 108 REMARK 465 GLU I 109 REMARK 465 TRP I 110 REMARK 465 GLY I 111 REMARK 465 ARG I 112 REMARK 465 SER I 113 REMARK 465 GLY I 114 REMARK 465 LYS I 115 REMARK 465 ASP I 116 REMARK 465 PRO I 117 REMARK 465 ASN I 118 REMARK 465 HIS I 119 REMARK 465 TYR I 120 REMARK 465 ARG I 121 REMARK 465 PRO I 122 REMARK 465 GLU I 123 REMARK 465 GLY I 124 REMARK 465 LEU I 125 REMARK 465 PRO I 126 REMARK 465 ASP I 127 REMARK 465 LYS I 128 REMARK 465 TYR I 129 REMARK 465 MET J 1 REMARK 465 LYS J 2 REMARK 465 LEU J 3 REMARK 465 PHE J 4 REMARK 465 THR J 5 REMARK 465 GLY J 6 REMARK 465 LEU J 7 REMARK 465 VAL J 8 REMARK 465 PHE J 9 REMARK 465 CYS J 10 REMARK 465 SER J 11 REMARK 465 LEU J 12 REMARK 465 VAL J 13 REMARK 465 LEU J 14 REMARK 465 GLY J 15 REMARK 465 VAL J 16 REMARK 465 SER J 17 REMARK 465 SER J 18 REMARK 465 GLY J 95 REMARK 465 HIS J 96 REMARK 465 GLY J 97 REMARK 465 ALA J 98 REMARK 465 GLU J 99 REMARK 465 ASP J 100 REMARK 465 SER J 101 REMARK 465 LYS J 102 REMARK 465 ALA J 103 REMARK 465 ASP J 104 REMARK 465 GLN J 105 REMARK 465 GLU J 106 REMARK 465 ALA J 107 REMARK 465 ASN J 108 REMARK 465 GLU J 109 REMARK 465 TRP J 110 REMARK 465 GLY J 111 REMARK 465 ARG J 112 REMARK 465 SER J 113 REMARK 465 GLY J 114 REMARK 465 LYS J 115 REMARK 465 ASP J 116 REMARK 465 PRO J 117 REMARK 465 ASN J 118 REMARK 465 HIS J 119 REMARK 465 TYR J 120 REMARK 465 ARG J 121 REMARK 465 PRO J 122 REMARK 465 GLU J 123 REMARK 465 GLY J 124 REMARK 465 LEU J 125 REMARK 465 PRO J 126 REMARK 465 ASP J 127 REMARK 465 LYS J 128 REMARK 465 TYR J 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 -60.33 -94.70 REMARK 500 SER B 76 -60.28 -94.73 REMARK 500 SER C 76 -60.32 -94.71 REMARK 500 SER D 76 -60.25 -94.71 REMARK 500 SER E 76 -60.39 -94.68 REMARK 500 SER F 76 -60.31 -94.70 REMARK 500 SER G 76 -60.26 -94.72 REMARK 500 SER H 76 -60.32 -94.68 REMARK 500 SER I 76 -60.33 -94.68 REMARK 500 SER J 76 -60.34 -94.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-14726 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF EX VIVO AA AMYLOID FROM RENAL TISSUE OF A REMARK 900 SHORT HAIR CAT DECEASED IN A SHELTER DBREF 7ZH7 A 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 B 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 C 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 D 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 E 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 F 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 G 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 H 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 I 1 129 UNP Q1T770 Q1T770_FELCA 1 129 DBREF 7ZH7 J 1 129 UNP Q1T770 Q1T770_FELCA 1 129 SEQRES 1 A 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 A 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 A 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 A 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 A 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 A 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 A 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 A 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 A 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 A 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 B 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 B 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 B 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 B 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 B 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 B 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 B 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 B 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 B 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 B 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 C 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 C 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 C 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 C 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 C 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 C 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 C 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 C 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 C 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 C 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 D 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 D 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 D 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 D 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 D 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 D 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 D 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 D 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 D 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 D 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 E 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 E 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 E 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 E 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 E 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 E 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 E 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 E 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 E 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 E 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 F 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 F 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 F 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 F 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 F 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 F 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 F 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 F 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 F 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 F 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 G 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 G 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 G 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 G 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 G 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 G 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 G 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 G 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 G 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 G 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 H 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 H 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 H 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 H 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 H 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 H 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 H 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 H 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 H 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 H 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 I 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 I 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 I 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 I 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 I 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 I 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 I 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 I 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 I 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 I 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SEQRES 1 J 129 MET LYS LEU PHE THR GLY LEU VAL PHE CYS SER LEU VAL SEQRES 2 J 129 LEU GLY VAL SER SER GLU TRP TYR SER PHE LEU GLY GLU SEQRES 3 J 129 ALA ALA GLN GLY ALA TRP ASP MET TRP ARG ALA TYR SER SEQRES 4 J 129 ASP MET ARG GLU ALA ASN TYR ILE GLY ALA ASP LYS TYR SEQRES 5 J 129 PHE HIS ALA ARG GLY ASN TYR ASP ALA ALA GLN ARG GLY SEQRES 6 J 129 PRO GLY GLY ALA TRP ALA ALA LYS VAL ILE SER ASP ALA SEQRES 7 J 129 ARG GLU ASN SER GLN ARG VAL THR ASP PHE PHE ARG HIS SEQRES 8 J 129 GLY ASN SER GLY HIS GLY ALA GLU ASP SER LYS ALA ASP SEQRES 9 J 129 GLN GLU ALA ASN GLU TRP GLY ARG SER GLY LYS ASP PRO SEQRES 10 J 129 ASN HIS TYR ARG PRO GLU GLY LEU PRO ASP LYS TYR SHEET 1 AA1 5 TRP D 20 ALA D 28 0 SHEET 2 AA1 5 TRP B 20 ALA B 28 1 N GLU B 26 O ALA D 27 SHEET 3 AA1 5 TRP A 20 ALA A 28 1 N GLU A 26 O ALA B 27 SHEET 4 AA1 5 TRP C 20 ALA C 28 1 O GLU C 26 N ALA A 27 SHEET 5 AA1 5 TRP E 20 ALA E 28 1 O GLU E 26 N ALA C 27 SHEET 1 AA2 5 ARG D 36 ASP D 40 0 SHEET 2 AA2 5 ARG B 36 ASP B 40 1 N SER B 39 O ASP D 40 SHEET 3 AA2 5 ARG A 36 ASP A 40 1 N SER A 39 O ASP B 40 SHEET 4 AA2 5 ARG C 36 ASP C 40 1 O SER C 39 N ASP A 40 SHEET 5 AA2 5 ARG E 36 ASP E 40 1 O ALA E 37 N TYR C 38 SHEET 1 AA3 5 ASN D 45 ILE D 47 0 SHEET 2 AA3 5 ASN B 45 ILE B 47 1 N ILE B 47 O TYR D 46 SHEET 3 AA3 5 ASN A 45 ILE A 47 1 N ILE A 47 O TYR B 46 SHEET 4 AA3 5 ASN C 45 ILE C 47 1 O ILE C 47 N TYR A 46 SHEET 5 AA3 5 ASN E 45 ILE E 47 1 O ILE E 47 N TYR C 46 SHEET 1 AA4 5 ASP D 50 ARG D 56 0 SHEET 2 AA4 5 ASP B 50 ARG B 56 1 N ALA B 55 O HIS D 54 SHEET 3 AA4 5 ASP A 50 ARG A 56 1 N ALA A 55 O HIS B 54 SHEET 4 AA4 5 ASP C 50 ARG C 56 1 O ALA C 55 N HIS A 54 SHEET 5 AA4 5 ASP E 50 ARG E 56 1 O ALA E 55 N HIS C 54 SHEET 1 AA5 5 GLN D 63 ARG D 64 0 SHEET 2 AA5 5 GLN B 63 ARG B 64 1 N ARG B 64 O GLN D 63 SHEET 3 AA5 5 GLN A 63 ARG A 64 1 N ARG A 64 O GLN B 63 SHEET 4 AA5 5 GLN C 63 ARG C 64 1 O ARG C 64 N GLN A 63 SHEET 5 AA5 5 GLN E 63 ARG E 64 1 O ARG E 64 N GLN C 63 SHEET 1 AA6 5 ALA D 69 ARG D 79 0 SHEET 2 AA6 5 ALA B 69 ARG B 79 1 N ASP B 77 O SER D 76 SHEET 3 AA6 5 ALA A 69 ARG A 79 1 N ASP A 77 O SER B 76 SHEET 4 AA6 5 ALA C 69 ARG C 79 1 O ASP C 77 N SER A 76 SHEET 5 AA6 5 ALA E 69 ARG E 79 1 O ASP E 77 N SER C 76 SHEET 1 AA7 5 SER D 82 ARG D 90 0 SHEET 2 AA7 5 SER B 82 ARG B 90 1 N PHE B 88 O PHE D 89 SHEET 3 AA7 5 SER A 82 ARG A 90 1 N PHE A 88 O PHE B 89 SHEET 4 AA7 5 SER C 82 ARG C 90 1 O PHE C 88 N PHE A 89 SHEET 5 AA7 5 SER E 82 ARG E 90 1 O PHE E 88 N PHE C 89 SHEET 1 AA8 5 TRP I 20 ALA I 28 0 SHEET 2 AA8 5 TRP G 20 ALA G 28 1 N GLU G 26 O ALA I 27 SHEET 3 AA8 5 TRP F 20 ALA F 28 1 N GLU F 26 O ALA G 27 SHEET 4 AA8 5 TRP H 20 ALA H 28 1 O GLU H 26 N ALA F 27 SHEET 5 AA8 5 TRP J 20 ALA J 28 1 O GLU J 26 N ALA H 27 SHEET 1 AA9 5 ARG I 36 ASP I 40 0 SHEET 2 AA9 5 ARG G 36 ASP G 40 1 N SER G 39 O ASP I 40 SHEET 3 AA9 5 ARG F 36 ASP F 40 1 N SER F 39 O ASP G 40 SHEET 4 AA9 5 ARG H 36 ASP H 40 1 O ALA H 37 N TYR F 38 SHEET 5 AA9 5 ARG J 36 ASP J 40 1 O SER J 39 N ASP H 40 SHEET 1 AB1 5 ASN I 45 ILE I 47 0 SHEET 2 AB1 5 ASN G 45 ILE G 47 1 N ILE G 47 O TYR I 46 SHEET 3 AB1 5 ASN F 45 ILE F 47 1 N ILE F 47 O TYR G 46 SHEET 4 AB1 5 ASN H 45 ILE H 47 1 O ILE H 47 N TYR F 46 SHEET 5 AB1 5 ASN J 45 ILE J 47 1 O ILE J 47 N TYR H 46 SHEET 1 AB2 5 ASP I 50 ARG I 56 0 SHEET 2 AB2 5 ASP G 50 ARG G 56 1 N ALA G 55 O HIS I 54 SHEET 3 AB2 5 ASP F 50 ARG F 56 1 N ALA F 55 O HIS G 54 SHEET 4 AB2 5 ASP H 50 ARG H 56 1 O ALA H 55 N HIS F 54 SHEET 5 AB2 5 ASP J 50 ARG J 56 1 O ALA J 55 N HIS H 54 SHEET 1 AB3 5 GLN I 63 ARG I 64 0 SHEET 2 AB3 5 GLN G 63 ARG G 64 1 N ARG G 64 O GLN I 63 SHEET 3 AB3 5 GLN F 63 ARG F 64 1 N ARG F 64 O GLN G 63 SHEET 4 AB3 5 GLN H 63 ARG H 64 1 O ARG H 64 N GLN F 63 SHEET 5 AB3 5 GLN J 63 ARG J 64 1 O ARG J 64 N GLN H 63 SHEET 1 AB4 5 ALA I 69 ARG I 79 0 SHEET 2 AB4 5 ALA G 69 ARG G 79 1 N ASP G 77 O SER I 76 SHEET 3 AB4 5 ALA F 69 ARG F 79 1 N ASP F 77 O SER G 76 SHEET 4 AB4 5 ALA H 69 ARG H 79 1 O ASP H 77 N SER F 76 SHEET 5 AB4 5 ALA J 69 ARG J 79 1 O ASP J 77 N SER H 76 SHEET 1 AB5 5 SER I 82 ARG I 90 0 SHEET 2 AB5 5 SER G 82 ARG G 90 1 N PHE G 88 O PHE I 89 SHEET 3 AB5 5 SER F 82 ARG F 90 1 N PHE F 88 O PHE G 89 SHEET 4 AB5 5 SER H 82 ARG H 90 1 O PHE H 88 N PHE F 89 SHEET 5 AB5 5 SER J 82 ARG J 90 1 O PHE J 88 N PHE H 89 CISPEP 1 GLY A 65 PRO A 66 0 6.27 CISPEP 2 GLY B 65 PRO B 66 0 6.29 CISPEP 3 GLY C 65 PRO C 66 0 6.36 CISPEP 4 GLY D 65 PRO D 66 0 6.25 CISPEP 5 GLY E 65 PRO E 66 0 6.40 CISPEP 6 GLY F 65 PRO F 66 0 6.23 CISPEP 7 GLY G 65 PRO G 66 0 6.28 CISPEP 8 GLY H 65 PRO H 66 0 6.31 CISPEP 9 GLY I 65 PRO I 66 0 6.51 CISPEP 10 GLY J 65 PRO J 66 0 6.25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000