HEADER OXIDOREDUCTASE 07-APR-22 7ZHU TITLE LEISHMANIA DONOVANI GLUCOSE 6-PHOSPHATE DEHYDROGENASE COMPLEXED WITH TITLE 2 NADP(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.49; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI; SOURCE 3 ORGANISM_TAXID: 5661; SOURCE 4 GENE: G6PDH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPANOSOMA, LEISHMANIA DONOVANI, GLUCOSE 6-PHOSPHATE DEHYDROGENASE, KEYWDS 2 G6P, NADP(H), PENTOSE PHOSPHATE PATHWAY, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FRITZ-WOLF,I.BERNEBURG REVDAT 3 01-MAY-24 7ZHU 1 REMARK REVDAT 2 21-DEC-22 7ZHU 1 JRNL REVDAT 1 14-DEC-22 7ZHU 0 JRNL AUTH I.BERNEBURG,S.RAHLFS,K.BECKER,K.FRITZ-WOLF JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA DONOVANI GLUCOSE 6-PHOSPHATE JRNL TITL 2 DEHYDROGENASE REVEALS A UNIQUE N-TERMINAL DOMAIN. JRNL REF COMMUN BIOL V. 5 1353 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 36494598 JRNL DOI 10.1038/S42003-022-04307-7 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 159688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0700 - 5.2800 0.96 5025 436 0.1757 0.1853 REMARK 3 2 5.2800 - 4.1900 0.98 4979 433 0.1529 0.1726 REMARK 3 3 4.1900 - 3.6600 0.96 4858 422 0.1601 0.1886 REMARK 3 4 3.6600 - 3.3300 0.98 4905 427 0.1681 0.1991 REMARK 3 5 3.3300 - 3.0900 0.98 4961 431 0.1813 0.2073 REMARK 3 6 3.0900 - 2.9100 0.98 4898 426 0.1843 0.2244 REMARK 3 7 2.9100 - 2.7600 0.98 4948 431 0.1824 0.2176 REMARK 3 8 2.7600 - 2.6400 0.98 4885 425 0.1914 0.2302 REMARK 3 9 2.6400 - 2.5400 0.98 4927 427 0.1912 0.2563 REMARK 3 10 2.5400 - 2.4500 0.98 4952 431 0.1898 0.2270 REMARK 3 11 2.4500 - 2.3800 0.98 4889 425 0.1954 0.2388 REMARK 3 12 2.3800 - 2.3100 0.98 4930 429 0.1971 0.2295 REMARK 3 13 2.3100 - 2.2500 0.98 4909 426 0.2046 0.2420 REMARK 3 14 2.2500 - 2.1900 0.98 4880 424 0.2139 0.2789 REMARK 3 15 2.1900 - 2.1400 0.98 4965 432 0.2382 0.2684 REMARK 3 16 2.1400 - 2.1000 0.98 4887 424 0.2358 0.2829 REMARK 3 17 2.1000 - 2.0600 0.98 4908 427 0.2366 0.2676 REMARK 3 18 2.0600 - 2.0200 0.98 4913 428 0.2396 0.2691 REMARK 3 19 2.0200 - 1.9800 0.98 4894 426 0.2457 0.2793 REMARK 3 20 1.9800 - 1.9500 0.98 4863 424 0.2567 0.2933 REMARK 3 21 1.9500 - 1.9200 0.98 4896 423 0.2760 0.3046 REMARK 3 22 1.9200 - 1.8900 0.98 4868 425 0.3004 0.3248 REMARK 3 23 1.8900 - 1.8600 0.98 4863 424 0.3461 0.4111 REMARK 3 24 1.8600 - 1.8300 0.97 4857 421 0.4096 0.4385 REMARK 3 25 1.8300 - 1.8100 0.98 4861 424 0.4454 0.4601 REMARK 3 26 1.8100 - 1.7800 0.97 4850 419 0.4319 0.4679 REMARK 3 27 1.7800 - 1.7600 0.97 4843 424 0.3637 0.3878 REMARK 3 28 1.7600 - 1.7400 0.98 4843 421 0.3776 0.3994 REMARK 3 29 1.7400 - 1.7200 0.98 4856 424 0.3908 0.4106 REMARK 3 30 1.7200 - 1.7000 0.96 4799 417 0.4163 0.4411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.304 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 9027 REMARK 3 ANGLE : 0.899 12171 REMARK 3 CHIRALITY : 0.054 1327 REMARK 3 PLANARITY : 0.008 1560 REMARK 3 DIHEDRAL : 17.320 3363 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 159924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: D_1292122100 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 3000, 100-150 MM AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 111.61500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 111.61500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 GLN A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 ALA A 8 REMARK 465 ASP A 50 REMARK 465 ARG A 51 REMARK 465 GLY A 52 REMARK 465 ALA A 53 REMARK 465 GLU A 54 REMARK 465 SER A 55 REMARK 465 TYR A 476 REMARK 465 ASP A 477 REMARK 465 VAL A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 553 REMARK 465 TYR A 554 REMARK 465 HIS A 555 REMARK 465 TRP A 556 REMARK 465 LEU A 557 REMARK 465 PRO A 558 REMARK 465 SER A 559 REMARK 465 ASN A 560 REMARK 465 LYS A 561 REMARK 465 LEU A 562 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 51 REMARK 465 GLY B 52 REMARK 465 ALA B 53 REMARK 465 GLU B 54 REMARK 465 LYS B 552 REMARK 465 GLY B 553 REMARK 465 TYR B 554 REMARK 465 HIS B 555 REMARK 465 TRP B 556 REMARK 465 LEU B 557 REMARK 465 PRO B 558 REMARK 465 SER B 559 REMARK 465 ASN B 560 REMARK 465 LYS B 561 REMARK 465 LEU B 562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 159 O HOH B 701 2.04 REMARK 500 O HOH B 963 O HOH B 994 2.09 REMARK 500 O4 PEG A 611 O HOH A 701 2.09 REMARK 500 O HOH B 968 O HOH B 1067 2.13 REMARK 500 O HOH A 1063 O HOH A 1133 2.15 REMARK 500 O HOH A 1041 O HOH A 1055 2.15 REMARK 500 O HOH A 885 O HOH A 1092 2.16 REMARK 500 OG SER B 69 OE2 GLU B 178 2.16 REMARK 500 O HOH A 1035 O HOH A 1057 2.16 REMARK 500 O HOH A 841 O HOH A 1128 2.16 REMARK 500 O HOH A 716 O HOH A 968 2.17 REMARK 500 O HOH A 973 O HOH B 1081 2.17 REMARK 500 O HOH B 996 O HOH B 1116 2.18 REMARK 500 O HOH A 1064 O HOH A 1066 2.18 REMARK 500 O1 PEG A 607 O HOH A 702 2.18 REMARK 500 O HOH B 1035 O HOH B 1066 2.18 REMARK 500 O HOH A 1082 O HOH A 1127 2.19 REMARK 500 O HOH A 770 O HOH A 787 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1004 O HOH B 738 4556 2.09 REMARK 500 O HOH A 836 O HOH B 1024 4546 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 56 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 147.97 -172.15 REMARK 500 THR A 125 -60.80 -95.19 REMARK 500 SER A 131 109.00 -59.89 REMARK 500 LEU A 133 16.23 -63.06 REMARK 500 SER A 134 -43.71 62.00 REMARK 500 ALA A 205 34.86 -147.19 REMARK 500 ASN A 311 -70.92 -107.75 REMARK 500 ASP A 459 -175.36 -66.24 REMARK 500 LYS B 87 -48.34 -130.55 REMARK 500 VAL B 308 -12.13 -141.49 REMARK 500 ASN B 311 -70.40 -104.50 REMARK 500 VAL B 408 -159.86 -104.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1139 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A1140 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A1141 DISTANCE = 7.61 ANGSTROMS REMARK 525 HOH B1148 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1149 DISTANCE = 6.82 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZHT RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 7ZHV RELATED DB: PDB REMARK 900 COMPLEXED WITH G6P REMARK 900 RELATED ID: 7ZHW RELATED DB: PDB REMARK 900 COMPLEXED WITH G6P AND NADP(H) REMARK 900 RELATED ID: 7ZHX RELATED DB: PDB REMARK 900 N-DOMAIN DELETION MUTANT REMARK 900 RELATED ID: 7ZHY RELATED DB: PDB REMARK 900 C138S MUTANT COMPLEXED WITH NADP(H) REMARK 900 RELATED ID: 7ZHZ RELATED DB: PDB REMARK 900 C138S MUTANT COMPLEXED WITH G6P AND NADP(H) DBREF 7ZHU A 1 562 UNP A2CIL3 A2CIL3_LEIDO 1 562 DBREF 7ZHU B 1 562 UNP A2CIL3 A2CIL3_LEIDO 1 562 SEQRES 1 A 562 MET SER GLU GLU GLN SER HIS ALA ASP GLN ASP ALA TYR SEQRES 2 A 562 VAL ALA ASP VAL ASP GLY ILE LEU ASP VAL LEU ARG ALA SEQRES 3 A 562 GLN VAL LEU GLU ARG LYS PRO ASP ASP ILE PHE GLN PHE SEQRES 4 A 562 ILE SER LYS SER ALA LEU SER LEU GLN LYS ASP ARG GLY SEQRES 5 A 562 ALA GLU SER CYS ASP ARG ILE ASN CYS LYS VAL LYS ASP SEQRES 6 A 562 GLU GLN LYS SER ARG ALA LEU THR ILE ILE VAL PHE GLY SEQRES 7 A 562 ALA SER GLY ASP LEU ALA LYS LYS LYS THR PHE PRO ALA SEQRES 8 A 562 LEU PHE ASP LEU TYR CYS GLY GLY LEU LEU PRO PRO GLU SEQRES 9 A 562 VAL ASN ILE ILE GLY TYR ALA ARG THR LYS VAL ASP ASP SEQRES 10 A 562 VAL GLU LYS TRP LYS HIS GLU THR LEU MET LYS TYR PHE SEQRES 11 A 562 SER ASN LEU SER GLU ARG GLY CYS HIS ALA GLU ASP PHE SEQRES 12 A 562 LEU LYS HIS ILE SER TYR PHE CYS GLY ALA TYR ASP SER SEQRES 13 A 562 VAL ASP ASP PHE LYS ARG LEU ASP ALA VAL ILE ARG GLU SEQRES 14 A 562 LYS GLU ASN ALA PHE LYS GLY PRO GLU LYS GLY GLY ASN SEQRES 15 A 562 ARG LEU PHE TYR LEU ALA LEU PRO PRO SER VAL PHE ALA SEQRES 16 A 562 SER VAL CYS GLU SER ILE HIS LYS GLY ALA MET PRO GLN SEQRES 17 A 562 GLU VAL GLY GLY TRP VAL ARG VAL ILE ILE GLU LYS PRO SEQRES 18 A 562 PHE GLY ARG ASP THR LYS SER SER ALA GLU LEU SER GLN SEQRES 19 A 562 ALA LEU GLU PRO PHE PHE ASP GLU SER GLN LEU TYR ARG SEQRES 20 A 562 ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN ASN ILE SEQRES 21 A 562 ILE THR THR ARG PHE ALA ASN ARG ILE PHE SER ALA VAL SEQRES 22 A 562 TRP ASN ALA SER ASN ILE ALA CYS VAL GLN ILE THR PHE SEQRES 23 A 562 LYS GLU THR ILE GLY THR GLU GLY ARG GLY GLY TYR PHE SEQRES 24 A 562 ASP ASN ILE GLY ILE ILE ARG ASP VAL MET GLN ASN HIS SEQRES 25 A 562 LEU THR GLN ILE LEU ALA LEU LEU ALA MET GLU LYS PRO SEQRES 26 A 562 ARG SER LEU ASP ALA GLU CYS ILE ARG ASP GLU LYS VAL SEQRES 27 A 562 SER VAL LEU LYS CYS ILE GLU PRO ILE THR LYS GLU ASN SEQRES 28 A 562 CYS VAL LEU GLY GLN TYR THR ALA SER ALA ASP GLY SER SEQRES 29 A 562 ILE PRO GLY TYR LEU GLU ASP VAL THR VAL PRO GLU GLY SEQRES 30 A 562 SER THR CYS PRO THR PHE ALA VAL MET ARG LEU ASN ILE SEQRES 31 A 562 ASN ASN ASP ARG TRP ALA GLY VAL PRO PHE ILE LEU LYS SEQRES 32 A 562 ALA GLY LYS ALA VAL GLU GLN LYS TYR VAL ALA ILE ARG SEQRES 33 A 562 ILE GLN PHE ARG ASP GLU VAL HIS PRO TYR GLY GLU ALA SEQRES 34 A 562 THR GLN ARG ASN GLU LEU VAL ILE ARG ALA GLN PRO SER SEQRES 35 A 562 GLU ALA MET TYR VAL LYS ILE THR THR LYS VAL PRO GLY SEQRES 36 A 562 LEU SER GLY ASP LEU ARG GLN THR HIS GLN THR GLU LEU SEQRES 37 A 562 ASP LEU THR TYR HIS THR ARG TYR ASP VAL ARG LEU PRO SEQRES 38 A 562 ASP ALA TYR GLU SER LEU ILE ASN ASP ALA LEU LEU GLY SEQRES 39 A 562 ASN SER THR ASN PHE VAL ARG LYS ASP GLU LEU ASP VAL SEQRES 40 A 562 ALA TRP ARG ILE PHE THR PRO LEU LEU HIS GLN ILE ASP SEQRES 41 A 562 SER GLY GLU ILE LYS PRO ILE PRO TYR GLN ALA GLY THR SEQRES 42 A 562 ARG GLY PRO LYS GLU ALA ASP GLU PHE ILE ALA ASN ASN SEQRES 43 A 562 GLY PHE LYS HIS GLN LYS GLY TYR HIS TRP LEU PRO SER SEQRES 44 A 562 ASN LYS LEU SEQRES 1 B 562 MET SER GLU GLU GLN SER HIS ALA ASP GLN ASP ALA TYR SEQRES 2 B 562 VAL ALA ASP VAL ASP GLY ILE LEU ASP VAL LEU ARG ALA SEQRES 3 B 562 GLN VAL LEU GLU ARG LYS PRO ASP ASP ILE PHE GLN PHE SEQRES 4 B 562 ILE SER LYS SER ALA LEU SER LEU GLN LYS ASP ARG GLY SEQRES 5 B 562 ALA GLU SER CYS ASP ARG ILE ASN CYS LYS VAL LYS ASP SEQRES 6 B 562 GLU GLN LYS SER ARG ALA LEU THR ILE ILE VAL PHE GLY SEQRES 7 B 562 ALA SER GLY ASP LEU ALA LYS LYS LYS THR PHE PRO ALA SEQRES 8 B 562 LEU PHE ASP LEU TYR CYS GLY GLY LEU LEU PRO PRO GLU SEQRES 9 B 562 VAL ASN ILE ILE GLY TYR ALA ARG THR LYS VAL ASP ASP SEQRES 10 B 562 VAL GLU LYS TRP LYS HIS GLU THR LEU MET LYS TYR PHE SEQRES 11 B 562 SER ASN LEU SER GLU ARG GLY CYS HIS ALA GLU ASP PHE SEQRES 12 B 562 LEU LYS HIS ILE SER TYR PHE CYS GLY ALA TYR ASP SER SEQRES 13 B 562 VAL ASP ASP PHE LYS ARG LEU ASP ALA VAL ILE ARG GLU SEQRES 14 B 562 LYS GLU ASN ALA PHE LYS GLY PRO GLU LYS GLY GLY ASN SEQRES 15 B 562 ARG LEU PHE TYR LEU ALA LEU PRO PRO SER VAL PHE ALA SEQRES 16 B 562 SER VAL CYS GLU SER ILE HIS LYS GLY ALA MET PRO GLN SEQRES 17 B 562 GLU VAL GLY GLY TRP VAL ARG VAL ILE ILE GLU LYS PRO SEQRES 18 B 562 PHE GLY ARG ASP THR LYS SER SER ALA GLU LEU SER GLN SEQRES 19 B 562 ALA LEU GLU PRO PHE PHE ASP GLU SER GLN LEU TYR ARG SEQRES 20 B 562 ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN ASN ILE SEQRES 21 B 562 ILE THR THR ARG PHE ALA ASN ARG ILE PHE SER ALA VAL SEQRES 22 B 562 TRP ASN ALA SER ASN ILE ALA CYS VAL GLN ILE THR PHE SEQRES 23 B 562 LYS GLU THR ILE GLY THR GLU GLY ARG GLY GLY TYR PHE SEQRES 24 B 562 ASP ASN ILE GLY ILE ILE ARG ASP VAL MET GLN ASN HIS SEQRES 25 B 562 LEU THR GLN ILE LEU ALA LEU LEU ALA MET GLU LYS PRO SEQRES 26 B 562 ARG SER LEU ASP ALA GLU CYS ILE ARG ASP GLU LYS VAL SEQRES 27 B 562 SER VAL LEU LYS CYS ILE GLU PRO ILE THR LYS GLU ASN SEQRES 28 B 562 CYS VAL LEU GLY GLN TYR THR ALA SER ALA ASP GLY SER SEQRES 29 B 562 ILE PRO GLY TYR LEU GLU ASP VAL THR VAL PRO GLU GLY SEQRES 30 B 562 SER THR CYS PRO THR PHE ALA VAL MET ARG LEU ASN ILE SEQRES 31 B 562 ASN ASN ASP ARG TRP ALA GLY VAL PRO PHE ILE LEU LYS SEQRES 32 B 562 ALA GLY LYS ALA VAL GLU GLN LYS TYR VAL ALA ILE ARG SEQRES 33 B 562 ILE GLN PHE ARG ASP GLU VAL HIS PRO TYR GLY GLU ALA SEQRES 34 B 562 THR GLN ARG ASN GLU LEU VAL ILE ARG ALA GLN PRO SER SEQRES 35 B 562 GLU ALA MET TYR VAL LYS ILE THR THR LYS VAL PRO GLY SEQRES 36 B 562 LEU SER GLY ASP LEU ARG GLN THR HIS GLN THR GLU LEU SEQRES 37 B 562 ASP LEU THR TYR HIS THR ARG TYR ASP VAL ARG LEU PRO SEQRES 38 B 562 ASP ALA TYR GLU SER LEU ILE ASN ASP ALA LEU LEU GLY SEQRES 39 B 562 ASN SER THR ASN PHE VAL ARG LYS ASP GLU LEU ASP VAL SEQRES 40 B 562 ALA TRP ARG ILE PHE THR PRO LEU LEU HIS GLN ILE ASP SEQRES 41 B 562 SER GLY GLU ILE LYS PRO ILE PRO TYR GLN ALA GLY THR SEQRES 42 B 562 ARG GLY PRO LYS GLU ALA ASP GLU PHE ILE ALA ASN ASN SEQRES 43 B 562 GLY PHE LYS HIS GLN LYS GLY TYR HIS TRP LEU PRO SER SEQRES 44 B 562 ASN LYS LEU HET NDP A 601 48 HET EDO A 602 4 HET SO4 A 603 5 HET EDO A 604 4 HET PEG A 605 7 HET EDO A 606 4 HET PEG A 607 7 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET PEG A 611 7 HET EDO A 612 4 HET EDO A 613 4 HET PGE A 614 10 HET EDO A 615 4 HET EDO A 616 4 HET SO4 A 617 5 HET SO4 A 618 5 HET SO4 A 619 5 HET EDO A 620 4 HET EDO A 621 4 HET NDP B 601 48 HET EDO B 602 4 HET SO4 B 603 5 HET EDO B 604 4 HET EDO B 605 4 HET PEG B 606 7 HET SO4 B 607 5 HET EDO B 608 4 HET PEG B 609 7 HET EDO B 610 4 HET EDO B 611 4 HET PEG B 612 7 HET EDO B 613 4 HET EDO B 614 4 HET EDO B 615 4 HET EDO B 616 4 HET EDO B 617 4 HET SO4 B 618 5 HET EDO B 619 4 HET EDO B 620 4 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 EDO 25(C2 H6 O2) FORMUL 5 SO4 7(O4 S 2-) FORMUL 7 PEG 6(C4 H10 O3) FORMUL 16 PGE C6 H14 O4 FORMUL 44 HOH *890(H2 O) HELIX 1 AA1 ASP A 9 LYS A 32 1 24 HELIX 2 AA2 ASP A 35 GLN A 48 1 14 HELIX 3 AA3 GLY A 81 LYS A 87 1 7 HELIX 4 AA4 LYS A 87 GLY A 98 1 12 HELIX 5 AA5 ASP A 117 THR A 125 1 9 HELIX 6 AA6 LEU A 126 PHE A 130 5 5 HELIX 7 AA7 GLU A 135 CYS A 138 5 4 HELIX 8 AA8 HIS A 139 LYS A 145 1 7 HELIX 9 AA9 SER A 156 ALA A 173 1 18 HELIX 10 AB1 PRO A 190 SER A 192 5 3 HELIX 11 AB2 VAL A 193 ALA A 205 1 13 HELIX 12 AB3 ASP A 225 GLU A 237 1 13 HELIX 13 AB4 GLY A 253 ALA A 266 1 14 HELIX 14 AB5 ASN A 267 ALA A 272 1 6 HELIX 15 AB6 ARG A 295 ASP A 300 1 6 HELIX 16 AB7 ILE A 302 MET A 309 1 8 HELIX 17 AB8 ASN A 311 MET A 322 1 12 HELIX 18 AB9 ASP A 329 LYS A 342 1 14 HELIX 19 AC1 THR A 348 GLU A 350 5 3 HELIX 20 AC2 TYR A 426 THR A 430 5 5 HELIX 21 AC3 ASP A 482 GLY A 494 1 13 HELIX 22 AC4 ARG A 501 SER A 521 1 21 HELIX 23 AC5 PRO A 536 ASN A 546 1 11 HELIX 24 AC6 SER B 6 LYS B 32 1 27 HELIX 25 AC7 ASP B 35 ASP B 50 1 16 HELIX 26 AC8 GLY B 81 LYS B 87 1 7 HELIX 27 AC9 LYS B 87 GLY B 98 1 12 HELIX 28 AD1 ASP B 117 THR B 125 1 9 HELIX 29 AD2 LEU B 126 PHE B 130 5 5 HELIX 30 AD3 ASN B 132 LYS B 145 1 14 HELIX 31 AD4 SER B 156 ALA B 173 1 18 HELIX 32 AD5 PRO B 190 SER B 192 5 3 HELIX 33 AD6 VAL B 193 ALA B 205 1 13 HELIX 34 AD7 ASP B 225 GLU B 237 1 13 HELIX 35 AD8 GLY B 253 ALA B 266 1 14 HELIX 36 AD9 ASN B 267 TRP B 274 1 8 HELIX 37 AE1 ARG B 295 ASN B 301 1 7 HELIX 38 AE2 ILE B 302 MET B 309 1 8 HELIX 39 AE3 ASN B 311 MET B 322 1 12 HELIX 40 AE4 ASP B 329 LYS B 342 1 14 HELIX 41 AE5 THR B 348 GLU B 350 5 3 HELIX 42 AE6 TYR B 426 THR B 430 5 5 HELIX 43 AE7 ASP B 482 GLY B 494 1 13 HELIX 44 AE8 ARG B 501 SER B 521 1 21 HELIX 45 AE9 PRO B 536 ASN B 546 1 11 SHEET 1 AA1 6 ILE A 147 CYS A 151 0 SHEET 2 AA1 6 ASN A 106 ALA A 111 1 N GLY A 109 O PHE A 150 SHEET 3 AA1 6 LEU A 72 PHE A 77 1 N ILE A 74 O ASN A 106 SHEET 4 AA1 6 ASN A 182 LEU A 187 1 O TYR A 186 N ILE A 75 SHEET 5 AA1 6 VAL A 214 ILE A 218 1 O ARG A 215 N PHE A 185 SHEET 6 AA1 6 LEU A 245 ARG A 247 1 O TYR A 246 N VAL A 216 SHEET 1 AA2 9 THR A 463 TYR A 472 0 SHEET 2 AA2 9 ALA A 444 LYS A 452 -1 N VAL A 447 O LEU A 468 SHEET 3 AA2 9 GLU A 434 GLN A 440 -1 N ARG A 438 O ALA A 444 SHEET 4 AA2 9 TYR A 412 PHE A 419 -1 N ILE A 417 O LEU A 435 SHEET 5 AA2 9 ILE A 279 LYS A 287 -1 N LYS A 287 O TYR A 412 SHEET 6 AA2 9 PRO A 399 GLY A 405 1 O ILE A 401 N VAL A 282 SHEET 7 AA2 9 PHE A 383 ASN A 389 -1 N LEU A 388 O PHE A 400 SHEET 8 AA2 9 CYS A 352 THR A 358 -1 N VAL A 353 O VAL A 385 SHEET 9 AA2 9 ILE A 527 GLN A 530 1 O TYR A 529 N THR A 358 SHEET 1 AA3 6 ILE B 147 CYS B 151 0 SHEET 2 AA3 6 ASN B 106 ALA B 111 1 N GLY B 109 O SER B 148 SHEET 3 AA3 6 LEU B 72 PHE B 77 1 N VAL B 76 O ILE B 108 SHEET 4 AA3 6 ASN B 182 LEU B 187 1 O TYR B 186 N ILE B 75 SHEET 5 AA3 6 VAL B 214 ILE B 218 1 O ARG B 215 N PHE B 185 SHEET 6 AA3 6 LEU B 245 ARG B 247 1 O TYR B 246 N VAL B 216 SHEET 1 AA4 9 THR B 463 ASP B 469 0 SHEET 2 AA4 9 ALA B 444 LYS B 452 -1 N VAL B 447 O LEU B 468 SHEET 3 AA4 9 GLU B 434 GLN B 440 -1 N ARG B 438 O ALA B 444 SHEET 4 AA4 9 TYR B 412 PHE B 419 -1 N ILE B 417 O LEU B 435 SHEET 5 AA4 9 ILE B 279 LYS B 287 -1 N LYS B 287 O TYR B 412 SHEET 6 AA4 9 PRO B 399 GLY B 405 1 O ILE B 401 N VAL B 282 SHEET 7 AA4 9 PHE B 383 ASN B 389 -1 N LEU B 388 O PHE B 400 SHEET 8 AA4 9 CYS B 352 THR B 358 -1 N VAL B 353 O VAL B 385 SHEET 9 AA4 9 ILE B 527 GLN B 530 1 O TYR B 529 N THR B 358 SSBOND 1 CYS A 56 CYS A 138 1555 1555 2.04 SSBOND 2 CYS B 56 CYS B 138 1555 1555 2.04 LINK NZ LYS A 254 O1 PEG A 605 1555 1555 1.30 CISPEP 1 LYS A 220 PRO A 221 0 0.79 CISPEP 2 HIS A 424 PRO A 425 0 1.91 CISPEP 3 GLN A 440 PRO A 441 0 6.08 CISPEP 4 LYS B 220 PRO B 221 0 1.31 CISPEP 5 HIS B 424 PRO B 425 0 0.78 CISPEP 6 GLN B 440 PRO B 441 0 3.52 CRYST1 223.230 65.650 119.250 90.00 120.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004480 0.000000 0.002642 0.00000 SCALE2 0.000000 0.015232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009736 0.00000