HEADER VIRAL PROTEIN 19-APR-22 7ZMI TITLE CRYSTAL STRUCTURE OF UNLINKED NS2B_NS3 PROTEASE FROM ZIKA VIRUS IN TITLE 2 COMPLEX WITH INHIBITOR MI-2113 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT,NON-STRUCTURAL COMPND 5 PROTEIN 2B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE PROTEASE NS3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,NON-STRUCTURAL COMPND 11 PROTEIN 3; COMPND 12 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BZIPRO KEYWDS FLAVIVIRIN, SERINE PROTEASE, VIRAL PROTEIN, NS2B-NS3, ZIKA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HUBER,T.STEINMETZER REVDAT 4 07-FEB-24 7ZMI 1 REMARK REVDAT 3 19-APR-23 7ZMI 1 JRNL REVDAT 2 12-APR-23 7ZMI 1 JRNL REVDAT 1 28-DEC-22 7ZMI 0 JRNL AUTH S.J.HAMMERSCHMIDT,S.HUBER,N.J.BRAUN,M.LANDER,T.STEINMETZER, JRNL AUTH 2 C.KERSTEN JRNL TITL THERMODYNAMIC CHARACTERIZATION OF A MACROCYCLIC ZIKA VIRUS JRNL TITL 2 NS2B/NS3 PROTEASE INHIBITOR AND ITS ACYCLIC ANALOGS. JRNL REF ARCH PHARM V. 356 00518 2023 JRNL REFN ESSN 1521-4184 JRNL PMID 36480352 JRNL DOI 10.1002/ARDP.202200518 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2300 - 3.4100 1.00 2937 155 0.1613 0.1854 REMARK 3 2 3.4100 - 2.7100 1.00 2725 143 0.2074 0.2797 REMARK 3 3 2.7100 - 2.3600 0.99 2645 139 0.2486 0.3139 REMARK 3 4 2.3600 - 2.1500 0.99 2637 137 0.2133 0.2772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1492 REMARK 3 ANGLE : 0.786 2033 REMARK 3 CHIRALITY : 0.054 224 REMARK 3 PLANARITY : 0.005 272 REMARK 3 DIHEDRAL : 13.867 864 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8856 15.2582 -11.3338 REMARK 3 T TENSOR REMARK 3 T11: 0.7747 T22: 0.4985 REMARK 3 T33: 0.5599 T12: 0.2158 REMARK 3 T13: 0.1647 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 5.7841 L22: 1.1741 REMARK 3 L33: 6.0069 L12: 0.8971 REMARK 3 L13: 4.3884 L23: -0.9928 REMARK 3 S TENSOR REMARK 3 S11: 0.5375 S12: -0.3306 S13: 1.0936 REMARK 3 S21: 0.7143 S22: -0.1730 S23: -0.3280 REMARK 3 S31: -1.3408 S32: -1.1474 S33: -0.4317 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9869 7.7755 -22.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.6286 T22: 0.7133 REMARK 3 T33: 0.5311 T12: 0.3290 REMARK 3 T13: -0.0737 T23: 0.1049 REMARK 3 L TENSOR REMARK 3 L11: 2.3789 L22: 3.9597 REMARK 3 L33: 7.4280 L12: 2.1345 REMARK 3 L13: 0.0943 L23: 3.9075 REMARK 3 S TENSOR REMARK 3 S11: -0.5841 S12: -0.6907 S13: -0.1492 REMARK 3 S21: -0.5467 S22: -0.0157 S23: 1.1849 REMARK 3 S31: -0.4969 S32: -0.8912 S33: 0.5378 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3594 -4.0736 -29.9755 REMARK 3 T TENSOR REMARK 3 T11: 0.9505 T22: 0.6973 REMARK 3 T33: 0.3737 T12: 0.7670 REMARK 3 T13: -0.2111 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 6.2441 L22: 8.9616 REMARK 3 L33: 5.5392 L12: -6.1540 REMARK 3 L13: -2.7076 L23: 6.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.9956 S12: 1.3939 S13: 0.4714 REMARK 3 S21: -1.4421 S22: -0.6806 S23: -0.2358 REMARK 3 S31: -0.4510 S32: -0.1279 S33: 0.7660 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9276 -6.2895 -16.7866 REMARK 3 T TENSOR REMARK 3 T11: 0.5163 T22: 0.6365 REMARK 3 T33: 0.4327 T12: 0.2608 REMARK 3 T13: 0.1171 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 3.7572 L22: 2.7959 REMARK 3 L33: 8.0642 L12: 2.2632 REMARK 3 L13: 3.9901 L23: 0.2718 REMARK 3 S TENSOR REMARK 3 S11: 0.6843 S12: 0.4757 S13: -0.1580 REMARK 3 S21: -0.5056 S22: -0.1234 S23: -0.7702 REMARK 3 S31: 0.2984 S32: -0.1569 S33: 0.0787 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0039 8.6908 -17.7207 REMARK 3 T TENSOR REMARK 3 T11: 0.6233 T22: 0.4977 REMARK 3 T33: 0.4125 T12: 0.2158 REMARK 3 T13: 0.0076 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 6.6677 L22: 5.3554 REMARK 3 L33: 4.5990 L12: 5.9285 REMARK 3 L13: 5.1807 L23: 4.7667 REMARK 3 S TENSOR REMARK 3 S11: 0.3157 S12: -0.4409 S13: 0.5940 REMARK 3 S21: -0.3201 S22: -0.7578 S23: 0.6063 REMARK 3 S31: -0.2390 S32: -0.1664 S33: 0.4736 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8120 7.7787 -9.7388 REMARK 3 T TENSOR REMARK 3 T11: 0.5299 T22: 0.3882 REMARK 3 T33: 0.4247 T12: 0.1572 REMARK 3 T13: 0.0819 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 4.8077 L22: 1.8724 REMARK 3 L33: 3.4873 L12: 1.6517 REMARK 3 L13: 0.3957 L23: -1.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.3646 S12: -0.1852 S13: 0.6656 REMARK 3 S21: 0.1789 S22: -0.3084 S23: 0.2850 REMARK 3 S31: -0.5735 S32: -0.2224 S33: -0.0191 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7704 -2.9893 -17.3189 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.4632 REMARK 3 T33: 0.3022 T12: 0.2754 REMARK 3 T13: 0.0074 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 3.3285 L22: 0.1878 REMARK 3 L33: 0.8674 L12: -0.5909 REMARK 3 L13: 0.4545 L23: 0.2621 REMARK 3 S TENSOR REMARK 3 S11: 0.4542 S12: 0.5205 S13: 0.0137 REMARK 3 S21: -0.3823 S22: -0.4348 S23: -0.0309 REMARK 3 S31: 0.2913 S32: 0.1083 S33: -0.1041 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4814 -4.9059 -20.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.5661 T22: 0.5512 REMARK 3 T33: 0.3442 T12: 0.2814 REMARK 3 T13: 0.0470 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 4.4632 L22: 3.6051 REMARK 3 L33: 2.8716 L12: 0.8240 REMARK 3 L13: -0.7587 L23: 1.2486 REMARK 3 S TENSOR REMARK 3 S11: 0.3733 S12: 0.4411 S13: -0.0342 REMARK 3 S21: -0.3448 S22: -0.2735 S23: -0.1270 REMARK 3 S31: 0.0644 S32: 0.1947 S33: -0.0887 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8593 -4.5478 -16.1010 REMARK 3 T TENSOR REMARK 3 T11: 0.5655 T22: 0.5200 REMARK 3 T33: 0.3522 T12: 0.2527 REMARK 3 T13: 0.0884 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 9.4823 L22: 8.3980 REMARK 3 L33: 6.0711 L12: 4.4886 REMARK 3 L13: -1.4893 L23: -1.5795 REMARK 3 S TENSOR REMARK 3 S11: 0.6332 S12: 0.7414 S13: 1.0229 REMARK 3 S21: -0.2601 S22: -0.0066 S23: 0.2176 REMARK 3 S31: -0.2768 S32: 0.1741 S33: -0.6013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 43.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 24.71 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 33.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51600 REMARK 200 FOR SHELL : 6.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE 0.2 M AMMONIUM REMARK 280 SULFATE 16 % PEG2000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.76900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.65350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.88450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.76900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.88450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.65350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 313 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 329 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 49 CG1 CG2 REMARK 470 ASP A 50 CG OD1 OD2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 LEU A 74 CD1 CD2 REMARK 470 LEU A 86 CD1 CD2 REMARK 470 THR B 18 OG1 CG2 REMARK 470 ARG B 28 NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 54 CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 107 CD CE NZ REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 ILE B 156 CG1 CG2 CD1 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 ASN B 158 CG OD1 ND2 REMARK 470 LYS B 169 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 30 -156.52 -110.40 REMARK 500 CYS B 80 -7.35 76.47 REMARK 500 LEU B 92 -45.42 -133.69 REMARK 500 LEU B 92 -45.29 -133.69 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZMI A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF 7ZMI B 1 177 UNP Q32ZE1 POLG_ZIKV 1499 1675 SEQADV 7ZMI MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 7ZMI THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZMI GLY B 0 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZMI LYS B 107 UNP Q32ZE1 ARG 1605 CONFLICT SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET IXJ B 201 40 HETNAM IXJ (2~{R})-6-[[(2~{S})-6-AZANYL-2-[[(2~{S})-6-AZANYL-2-(2- HETNAM 2 IXJ PHENYLETHANOYLAMINO)HEXANOYL]AMINO]HEXANOYL]AMINO]-2- HETNAM 3 IXJ CARBAMIMIDAMIDO-HEXANOIC ACID FORMUL 3 IXJ C27 H46 N8 O5 FORMUL 4 HOH *37(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N MET A 51 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O VAL B 22 N ALA A 56 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O GLY B 39 N TYR B 23 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TYR B 68 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O PRO B 138 N LEU B 98 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O ILE B 147 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SSBOND 1 CYS B 143 CYS B 143 1555 8444 2.06 CRYST1 42.386 42.386 215.538 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004640 0.00000