HEADER MEMBRANE PROTEIN 20-APR-22 7ZN3 TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN INWARD PROTON PUMP XENORHODOPSIN TITLE 2 BCXER IN THE L STATE AT PH 8.2 IN THE PRESENCE OF SODIUM AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENORHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS COAHUILENSIS; SOURCE 3 ORGANISM_TAXID: 408580; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINAL, RHODOPSIN, XENORHODOPSIN, ION TRANSPORT, ISOMERIZATION, KEYWDS 2 PHOTOCYCLE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,F.TSYBROV,A.ALEKSEEV,G.BOURENKOV,V.GORDELIY REVDAT 5 07-FEB-24 7ZN3 1 REMARK REVDAT 4 26-JUL-23 7ZN3 1 JRNL REVDAT 3 12-JUL-23 7ZN3 1 JRNL REVDAT 2 31-MAY-23 7ZN3 1 LINK REVDAT 1 10-MAY-23 7ZN3 0 JRNL AUTH K.KOVALEV,F.TSYBROV,A.ALEKSEEV,V.SHEVCHENKO,D.SOLOVIOV, JRNL AUTH 2 S.SILETSKY,G.BOURENKOV,M.AGTHE,M.NIKOLOVA,D.VON STETTEN, JRNL AUTH 3 R.ASTASHKIN,S.BUKHDRUKER,I.CHIZHOV,A.ROYANT,A.KUZMIN, JRNL AUTH 4 I.GUSHCHIN,R.ROSSELLI,F.RODRIGUEZ-VALERA,N.ILYINSKIY, JRNL AUTH 5 A.ROGACHEV,V.BORSHCHEVSKIY,T.R.SCHNEIDER,E.BAMBERG, JRNL AUTH 6 V.GORDELIY JRNL TITL MECHANISMS OF INWARD TRANSMEMBRANE PROTON TRANSLOCATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 970 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37386213 JRNL DOI 10.1038/S41594-023-01020-9 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 66.2 REMARK 3 NUMBER OF REFLECTIONS : 78514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9800 - 4.8400 0.97 4187 222 0.2083 0.2098 REMARK 3 2 4.8400 - 3.8500 0.99 4103 213 0.1940 0.1854 REMARK 3 3 3.8500 - 3.3600 0.99 4060 228 0.1941 0.2122 REMARK 3 4 3.3600 - 3.0600 0.99 4048 209 0.1915 0.2254 REMARK 3 5 3.0600 - 2.8400 0.98 4002 199 0.1869 0.2102 REMARK 3 6 2.8400 - 2.6700 0.98 3984 209 0.1738 0.1889 REMARK 3 7 2.6700 - 2.5400 0.99 3961 203 0.1837 0.1799 REMARK 3 8 2.5400 - 2.4300 0.99 3984 218 0.1852 0.1919 REMARK 3 9 2.4300 - 2.3400 0.99 3963 214 0.1902 0.2023 REMARK 3 10 2.3300 - 2.2500 0.98 3972 171 0.1865 0.2457 REMARK 3 11 2.2500 - 2.1800 0.98 3958 214 0.2020 0.2196 REMARK 3 12 2.1800 - 2.1200 0.97 3892 191 0.2154 0.2517 REMARK 3 13 2.1200 - 2.0700 0.96 3849 211 0.2319 0.2517 REMARK 3 14 2.0700 - 2.0200 0.91 3660 172 0.2515 0.3051 REMARK 3 15 2.0200 - 1.9700 0.81 3261 165 0.2709 0.3082 REMARK 3 16 1.9700 - 1.9300 0.70 2818 129 0.2788 0.2959 REMARK 3 17 1.9300 - 1.8900 0.57 2282 121 0.2914 0.2905 REMARK 3 18 1.8900 - 1.8500 0.47 1906 88 0.2941 0.3446 REMARK 3 19 1.8500 - 1.8200 0.39 1518 103 0.2951 0.3068 REMARK 3 20 1.8200 - 1.7900 0.35 1378 81 0.3120 0.2995 REMARK 3 21 1.7900 - 1.7600 0.31 1237 70 0.3103 0.2849 REMARK 3 22 1.7600 - 1.7300 0.27 1069 56 0.3180 0.3044 REMARK 3 23 1.7300 - 1.7100 0.22 886 43 0.3122 0.3259 REMARK 3 24 1.7100 - 1.6800 0.18 697 40 0.3299 0.3887 REMARK 3 25 1.6800 - 1.6600 0.15 579 30 0.3184 0.2810 REMARK 3 26 1.6600 - 1.6400 0.13 525 21 0.3222 0.4208 REMARK 3 27 1.6400 - 1.6200 0.12 480 14 0.3056 0.2768 REMARK 3 28 1.6200 - 1.6000 0.10 404 16 0.3139 0.2299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZN3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.83500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA/K-PI PH 8.2, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.19500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.19500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 180.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 TYR A 226 REMARK 465 VAL A 227 REMARK 465 HIS A 228 REMARK 465 ASN A 229 REMARK 465 TYR B 61 REMARK 465 ASP B 62 REMARK 465 ASP B 63 REMARK 465 GLN B 223 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 TYR B 226 REMARK 465 VAL B 227 REMARK 465 HIS B 228 REMARK 465 ASN B 229 REMARK 465 ASP C 62 REMARK 465 ASP C 63 REMARK 465 SER C 225 REMARK 465 TYR C 226 REMARK 465 VAL C 227 REMARK 465 HIS C 228 REMARK 465 ASN C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 FME A 1 SD CE REMARK 470 LYS A 25 CE NZ REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 LYS A 94 NZ REMARK 470 LYS A 220 CE NZ REMARK 470 FME B 1 CG SD CE REMARK 470 THR B 64 OG1 CG2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 FME C 1 SD CE REMARK 470 LYS C 25 CD CE NZ REMARK 470 LYS C 28 CE NZ REMARK 470 ARG C 160 NE CZ NH1 NH2 REMARK 470 LYS C 220 CE NZ REMARK 470 SER C 224 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 34 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 61 107.72 -169.70 REMARK 500 LYR A 207 -66.47 -99.71 REMARK 500 VAL A 208 -52.78 -120.89 REMARK 500 LYR B 207 -66.35 -100.15 REMARK 500 LYR C 207 -75.98 -103.09 REMARK 500 VAL C 208 -50.56 -123.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 501 REMARK 610 LFA A 502 REMARK 610 LFA A 503 REMARK 610 OLA A 504 REMARK 610 OLA A 506 REMARK 610 OLA A 507 REMARK 610 OLA A 508 REMARK 610 LFA A 510 REMARK 610 LFA A 511 REMARK 610 LFA A 512 REMARK 610 LFA A 513 REMARK 610 LFA A 514 REMARK 610 LFA A 515 REMARK 610 LFA A 516 REMARK 610 LFA A 517 REMARK 610 LFA A 518 REMARK 610 LFA A 519 REMARK 610 LFA A 520 REMARK 610 LFA B 301 REMARK 610 LFA B 302 REMARK 610 LFA B 303 REMARK 610 LFA B 304 REMARK 610 OLA B 305 REMARK 610 OLA B 306 REMARK 610 OLA B 307 REMARK 610 LFA B 310 REMARK 610 LFA B 311 REMARK 610 LFA B 312 REMARK 610 LFA B 313 REMARK 610 LFA B 314 REMARK 610 LFA B 315 REMARK 610 LFA B 316 REMARK 610 LFA B 317 REMARK 610 LFA B 318 REMARK 610 LFA B 319 REMARK 610 LFA B 320 REMARK 610 LFA B 321 REMARK 610 LFA C 301 REMARK 610 OLA C 302 REMARK 610 OLA C 303 REMARK 610 OLA C 304 REMARK 610 OLA C 305 REMARK 610 LFA C 307 REMARK 610 LFA C 308 REMARK 610 LFA C 309 REMARK 610 LFA C 310 REMARK 610 LFA C 311 REMARK 610 LFA C 312 REMARK 610 LFA C 313 REMARK 610 LFA C 314 REMARK 610 LFA C 315 REMARK 610 LFA C 316 REMARK 610 LFA C 317 REMARK 610 LFA C 318 REMARK 610 LFA C 319 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 34 OE1 REMARK 620 2 GLU A 34 OE2 57.9 REMARK 620 3 ALA A 84 O 111.8 113.5 REMARK 620 4 THR A 88 OG1 103.6 155.7 87.2 REMARK 620 5 ASP A 214 OD2 138.1 102.2 110.0 81.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 34 OE1 REMARK 620 2 GLU B 34 OE2 57.7 REMARK 620 3 ALA B 84 O 111.1 113.8 REMARK 620 4 THR B 88 OG1 103.1 156.3 85.0 REMARK 620 5 ASP B 214 OD2 136.8 105.3 112.1 78.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 34 OE1 REMARK 620 2 GLU C 34 OE2 58.7 REMARK 620 3 ALA C 84 O 109.4 111.9 REMARK 620 4 THR C 88 OG1 103.8 158.0 85.6 REMARK 620 5 ASP C 214 OD2 140.0 103.2 110.5 81.6 REMARK 620 N 1 2 3 4 DBREF 7ZN3 A 1 229 PDB 7ZN3 7ZN3 1 229 DBREF 7ZN3 B 1 229 PDB 7ZN3 7ZN3 1 229 DBREF 7ZN3 C 1 229 PDB 7ZN3 7ZN3 1 229 SEQRES 1 A 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 A 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 A 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 A 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 A 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 A 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 A 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 A 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 A 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 A 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 A 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 A 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 A 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 A 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 A 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 A 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 A 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 A 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 B 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 B 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 B 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 B 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 B 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 B 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 B 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 B 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 B 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 B 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 B 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 B 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 B 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 B 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 B 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 B 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 B 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 B 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 C 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 C 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 C 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 C 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 C 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 C 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 C 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 C 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 C 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 C 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 C 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 C 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 C 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 C 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 C 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 C 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 C 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 C 229 HIS GLN SER SER TYR VAL HIS ASN HET FME A 1 8 HET LYR A 207 58 HET FME B 1 7 HET LYR B 207 58 HET FME C 1 8 HET LYR C 207 58 HET LFA A 501 6 HET LFA A 502 9 HET LFA A 503 7 HET OLA A 504 11 HET OLA A 505 40 HET OLA A 506 16 HET OLA A 507 11 HET OLA A 508 19 HET NA A 509 1 HET LFA A 510 9 HET LFA A 511 9 HET LFA A 512 7 HET LFA A 513 12 HET LFA A 514 7 HET LFA A 515 8 HET LFA A 516 6 HET LFA A 517 3 HET LFA A 518 5 HET LFA A 519 10 HET LFA A 520 10 HET PO4 A 521 5 HET LFA B 301 7 HET LFA B 302 15 HET LFA B 303 9 HET LFA B 304 7 HET OLA B 305 14 HET OLA B 306 16 HET OLA B 307 12 HET OLA B 308 20 HET NA B 309 1 HET LFA B 310 6 HET LFA B 311 9 HET LFA B 312 9 HET LFA B 313 7 HET LFA B 314 5 HET LFA B 315 5 HET LFA B 316 6 HET LFA B 317 4 HET LFA B 318 15 HET LFA B 319 9 HET LFA B 320 14 HET LFA B 321 10 HET LFA C 301 17 HET OLA C 302 16 HET OLA C 303 19 HET OLA C 304 16 HET OLA C 305 13 HET NA C 306 1 HET LFA C 307 10 HET LFA C 308 16 HET LFA C 309 4 HET LFA C 310 8 HET LFA C 311 9 HET LFA C 312 8 HET LFA C 313 8 HET LFA C 314 9 HET LFA C 315 9 HET LFA C 316 11 HET LFA C 317 9 HET LFA C 318 5 HET LFA C 319 8 HET PO4 C 320 5 HETNAM FME N-FORMYLMETHIONINE HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM OLA OLEIC ACID HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETSYN LFA LIPID FRAGMENT FORMUL 1 FME 3(C6 H11 N O3 S) FORMUL 1 LYR 3(C26 H42 N2 O2) FORMUL 4 LFA 44(C20 H42) FORMUL 7 OLA 13(C18 H34 O2) FORMUL 12 NA 3(NA 1+) FORMUL 24 PO4 2(O4 P 3-) FORMUL 66 HOH *237(H2 O) HELIX 1 AA1 FME A 1 LYS A 25 1 25 HELIX 2 AA2 PRO A 31 LEU A 54 1 24 HELIX 3 AA3 TYR A 68 MET A 90 1 23 HELIX 4 AA4 ASN A 96 SER A 120 1 25 HELIX 5 AA5 GLY A 122 GLY A 145 1 24 HELIX 6 AA6 GLY A 145 SER A 153 1 9 HELIX 7 AA7 GLY A 155 GLY A 183 1 29 HELIX 8 AA8 GLN A 191 LEU A 221 1 31 HELIX 9 AA9 ILE B 2 LYS B 25 1 24 HELIX 10 AB1 PRO B 31 LEU B 54 1 24 HELIX 11 AB2 TYR B 68 PHE B 91 1 24 HELIX 12 AB3 ASN B 96 SER B 120 1 25 HELIX 13 AB4 GLY B 122 GLY B 145 1 24 HELIX 14 AB5 GLY B 145 ASN B 154 1 10 HELIX 15 AB6 GLY B 155 GLY B 183 1 29 HELIX 16 AB7 GLN B 191 LEU B 221 1 31 HELIX 17 AB8 ILE C 2 LYS C 25 1 24 HELIX 18 AB9 PRO C 31 LEU C 54 1 24 HELIX 19 AC1 TYR C 68 PHE C 91 1 24 HELIX 20 AC2 ASN C 96 SER C 120 1 25 HELIX 21 AC3 GLY C 122 GLY C 145 1 24 HELIX 22 AC4 GLY C 145 ASN C 154 1 10 HELIX 23 AC5 GLY C 155 GLY C 183 1 29 HELIX 24 AC6 GLN C 191 LYR C 207 1 17 HELIX 25 AC7 LYR C 207 LYS C 220 1 14 SHEET 1 AA1 2 PHE A 59 TYR A 61 0 SHEET 2 AA1 2 THR A 64 ILE A 66 -1 O THR A 64 N TYR A 61 LINK C FME A 1 N ILE A 2 1555 1555 1.33 LINK C ASER A 206 N ALYR A 207 1555 1555 1.33 LINK C CSER A 206 N CLYR A 207 1555 1555 1.34 LINK C ALYR A 207 N AVAL A 208 1555 1555 1.34 LINK C CLYR A 207 N CVAL A 208 1555 1555 1.33 LINK C FME B 1 N ILE B 2 1555 1555 1.33 LINK C ASER B 206 N ALYR B 207 1555 1555 1.34 LINK C CSER B 206 N CLYR B 207 1555 1555 1.34 LINK C ALYR B 207 N AVAL B 208 1555 1555 1.34 LINK C CLYR B 207 N CVAL B 208 1555 1555 1.33 LINK C FME C 1 N ILE C 2 1555 1555 1.35 LINK C ASER C 206 N ALYR C 207 1555 1555 1.33 LINK C CSER C 206 N CLYR C 207 1555 1555 1.34 LINK C ALYR C 207 N AVAL C 208 1555 1555 1.35 LINK C CLYR C 207 N CVAL C 208 1555 1555 1.33 LINK OE1 GLU A 34 NA NA A 509 1555 1555 2.36 LINK OE2 GLU A 34 NA NA A 509 1555 1555 2.30 LINK O ALA A 84 NA NA A 509 1555 1555 2.36 LINK OG1 THR A 88 NA NA A 509 1555 1555 2.40 LINK OD2 ASP A 214 NA NA A 509 1555 1555 2.43 LINK OE1 GLU B 34 NA NA B 309 1555 1555 2.42 LINK OE2 GLU B 34 NA NA B 309 1555 1555 2.27 LINK O ALA B 84 NA NA B 309 1555 1555 2.37 LINK OG1 THR B 88 NA NA B 309 1555 1555 2.34 LINK OD2 ASP B 214 NA NA B 309 1555 1555 2.53 LINK OE1 GLU C 34 NA NA C 306 1555 1555 2.36 LINK OE2 GLU C 34 NA NA C 306 1555 1555 2.23 LINK O ALA C 84 NA NA C 306 1555 1555 2.49 LINK OG1 THR C 88 NA NA C 306 1555 1555 2.39 LINK OD2 ASP C 214 NA NA C 306 1555 1555 2.45 CRYST1 68.390 109.490 119.390 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008376 0.00000 HETATM 1 N FME A 1 11.486 23.855 -47.168 1.00 38.14 N HETATM 2 CN FME A 1 11.146 22.546 -47.219 1.00 49.60 C HETATM 3 O1 FME A 1 11.104 21.764 -46.264 1.00 46.54 O HETATM 4 CA FME A 1 11.780 24.561 -45.934 1.00 43.81 C HETATM 5 CB FME A 1 12.203 26.015 -46.182 1.00 44.01 C HETATM 6 CG FME A 1 12.594 26.739 -44.897 1.00 45.76 C HETATM 7 C FME A 1 10.577 24.564 -44.983 1.00 36.03 C HETATM 8 O FME A 1 10.732 24.404 -43.781 1.00 40.27 O