HEADER MEMBRANE PROTEIN 20-APR-22 7ZN8 TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN INWARD PROTON PUMP XENORHODOPSIN TITLE 2 BCXER IN THE GROUND STATE AT PH 7.0 IN THE PRESENCE OF SODIUM AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENORHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS COAHUILENSIS; SOURCE 3 ORGANISM_TAXID: 408580; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINAL, RHODOPSIN, XENORHODOPSIN, ION TRANSPORT, ISOMERIZATION, KEYWDS 2 PHOTOCYCLE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,F.TSYBROV,A.ALEKSEEV,G.BOURENKOV,V.GORDELIY REVDAT 5 07-FEB-24 7ZN8 1 REMARK REVDAT 4 26-JUL-23 7ZN8 1 JRNL REVDAT 3 12-JUL-23 7ZN8 1 JRNL REVDAT 2 31-MAY-23 7ZN8 1 LINK REVDAT 1 10-MAY-23 7ZN8 0 JRNL AUTH K.KOVALEV,F.TSYBROV,A.ALEKSEEV,V.SHEVCHENKO,D.SOLOVIOV, JRNL AUTH 2 S.SILETSKY,G.BOURENKOV,M.AGTHE,M.NIKOLOVA,D.VON STETTEN, JRNL AUTH 3 R.ASTASHKIN,S.BUKHDRUKER,I.CHIZHOV,A.ROYANT,A.KUZMIN, JRNL AUTH 4 I.GUSHCHIN,R.ROSSELLI,F.RODRIGUEZ-VALERA,N.ILYINSKIY, JRNL AUTH 5 A.ROGACHEV,V.BORSHCHEVSKIY,T.R.SCHNEIDER,E.BAMBERG, JRNL AUTH 6 V.GORDELIY JRNL TITL MECHANISMS OF INWARD TRANSMEMBRANE PROTON TRANSLOCATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 970 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37386213 JRNL DOI 10.1038/S41594-023-01020-9 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.2 REMARK 3 NUMBER OF REFLECTIONS : 35350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 727 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 22.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 745 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.384 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6190 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6793 ; 0.000 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8183 ; 1.091 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15611 ; 1.060 ; 1.544 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 690 ; 4.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;27.994 ;18.657 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 849 ;12.593 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.616 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6244 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1312 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 223 B 1 223 7791 0.080 0.050 REMARK 3 2 A 1 224 C 1 224 7786 0.080 0.050 REMARK 3 3 B 1 222 C 1 222 7752 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ZN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.798 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.77500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA/K-PI PH 8.2 CRYSTALS SOAKED REMARK 280 IN 1.2 M NA/K-PI PH 7.0 BEFORE HARVESTING, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 225 REMARK 465 TYR A 226 REMARK 465 VAL A 227 REMARK 465 HIS A 228 REMARK 465 ASN A 229 REMARK 465 ASP B 62 REMARK 465 ASP B 63 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 TYR B 226 REMARK 465 VAL B 227 REMARK 465 HIS B 228 REMARK 465 ASN B 229 REMARK 465 ASP C 62 REMARK 465 ASP C 63 REMARK 465 SER C 225 REMARK 465 TYR C 226 REMARK 465 VAL C 227 REMARK 465 HIS C 228 REMARK 465 ASN C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 LYS A 94 NZ REMARK 470 LYS A 220 CD CE NZ REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 SER A 224 OG REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 220 CD CE NZ REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 LYS C 25 CD CE NZ REMARK 470 LYS C 94 CD CE NZ REMARK 470 ARG C 160 NE CZ NH1 NH2 REMARK 470 LYS C 220 CE NZ REMARK 470 SER C 224 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 877 O HOH C 880 2.12 REMARK 500 O HOH A 835 O HOH A 848 2.15 REMARK 500 O HOH C 869 O HOH C 892 2.16 REMARK 500 O HIS A 216 O HOH A 801 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -25.07 82.54 REMARK 500 LYR A 207 -66.32 -108.43 REMARK 500 LYR B 207 -65.73 -108.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 701 REMARK 610 OLA A 703 REMARK 610 OLA A 704 REMARK 610 OLA A 706 REMARK 610 LFA A 708 REMARK 610 LFA A 709 REMARK 610 LFA A 710 REMARK 610 LFA A 711 REMARK 610 LFA A 712 REMARK 610 LFA A 713 REMARK 610 LFA A 714 REMARK 610 LFA A 715 REMARK 610 LFA A 716 REMARK 610 LFA A 717 REMARK 610 LFA A 718 REMARK 610 LFA A 719 REMARK 610 LFA A 720 REMARK 610 LFA A 721 REMARK 610 LFA A 722 REMARK 610 LFA A 723 REMARK 610 LFA A 724 REMARK 610 LFA A 725 REMARK 610 LFA B 301 REMARK 610 LFA B 302 REMARK 610 OLA B 303 REMARK 610 OLA B 304 REMARK 610 OLA B 305 REMARK 610 OLA B 306 REMARK 610 OLA B 307 REMARK 610 OLA B 308 REMARK 610 OLA B 309 REMARK 610 OLA B 310 REMARK 610 LFA B 312 REMARK 610 LFA B 313 REMARK 610 LFA B 314 REMARK 610 LFA B 315 REMARK 610 LFA B 316 REMARK 610 LFA B 317 REMARK 610 LFA B 318 REMARK 610 LFA B 319 REMARK 610 LFA B 320 REMARK 610 LFA B 321 REMARK 610 LFA B 322 REMARK 610 LFA B 323 REMARK 610 LFA B 324 REMARK 610 LFA B 325 REMARK 610 OLA C 701 REMARK 610 OLA C 702 REMARK 610 OLA C 703 REMARK 610 LFA C 706 REMARK 610 LFA C 707 REMARK 610 LFA C 708 REMARK 610 LFA C 709 REMARK 610 LFA C 710 REMARK 610 LFA C 711 REMARK 610 LFA C 712 REMARK 610 LFA C 713 REMARK 610 LFA C 714 REMARK 610 LFA C 715 REMARK 610 LFA C 716 REMARK 610 LFA C 717 REMARK 610 LFA C 718 REMARK 610 LFA C 719 REMARK 610 LFA C 720 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 707 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 34 OE1 REMARK 620 2 GLU A 34 OE2 51.0 REMARK 620 3 ALA A 84 O 106.8 121.0 REMARK 620 4 THR A 88 OG1 94.2 142.7 77.4 REMARK 620 5 ASP A 214 OD2 138.9 120.3 109.1 75.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 34 OE1 REMARK 620 2 GLU B 34 OE2 55.1 REMARK 620 3 ALA B 84 O 112.1 117.2 REMARK 620 4 THR B 88 OG1 100.4 153.5 79.2 REMARK 620 5 ASP B 214 OD2 139.3 113.2 107.5 77.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 705 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 34 OE1 REMARK 620 2 GLU C 34 OE2 57.3 REMARK 620 3 ALA C 84 O 114.1 119.1 REMARK 620 4 THR C 88 OG1 102.4 155.2 80.8 REMARK 620 5 ASP C 214 OD2 143.3 110.6 102.0 76.5 REMARK 620 N 1 2 3 4 DBREF 7ZN8 A 1 229 PDB 7ZN8 7ZN8 1 229 DBREF 7ZN8 B 1 229 PDB 7ZN8 7ZN8 1 229 DBREF 7ZN8 C 1 229 PDB 7ZN8 7ZN8 1 229 SEQRES 1 A 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 A 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 A 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 A 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 A 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 A 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 A 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 A 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 A 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 A 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 A 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 A 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 A 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 A 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 A 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 A 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 A 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 A 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 B 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 B 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 B 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 B 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 B 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 B 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 B 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 B 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 B 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 B 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 B 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 B 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 B 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 B 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 B 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 B 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 B 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 B 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 C 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 C 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 C 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 C 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 C 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 C 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 C 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 C 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 C 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 C 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 C 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 C 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 C 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 C 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 C 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 C 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 C 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 C 229 HIS GLN SER SER TYR VAL HIS ASN HET FME A 1 10 HET LYR A 207 29 HET FME B 1 10 HET LYR B 207 29 HET FME C 1 10 HET LYR C 207 29 HET LFA A 701 9 HET OLA A 702 20 HET OLA A 703 14 HET OLA A 704 11 HET OLC A 705 25 HET OLA A 706 14 HET NA A 707 1 HET LFA A 708 9 HET LFA A 709 9 HET LFA A 710 12 HET LFA A 711 8 HET LFA A 712 6 HET LFA A 713 3 HET LFA A 714 10 HET LFA A 715 3 HET LFA A 716 10 HET LFA A 717 10 HET LFA A 718 13 HET LFA A 719 13 HET LFA A 720 17 HET LFA A 721 11 HET LFA A 722 8 HET LFA A 723 8 HET LFA A 724 6 HET LFA A 725 4 HET PO4 A 726 5 HET LFA B 301 7 HET LFA B 302 9 HET OLA B 303 13 HET OLA B 304 16 HET OLA B 305 12 HET OLA B 306 19 HET OLA B 307 16 HET OLA B 308 19 HET OLA B 309 19 HET OLA B 310 14 HET NA B 311 1 HET LFA B 312 6 HET LFA B 313 9 HET LFA B 314 7 HET LFA B 315 5 HET LFA B 316 6 HET LFA B 317 15 HET LFA B 318 8 HET LFA B 319 11 HET LFA B 320 10 HET LFA B 321 9 HET LFA B 322 14 HET LFA B 323 4 HET LFA B 324 11 HET LFA B 325 9 HET OLA C 701 16 HET OLA C 702 16 HET OLA C 703 15 HET OLA C 704 20 HET NA C 705 1 HET LFA C 706 10 HET LFA C 707 16 HET LFA C 708 8 HET LFA C 709 9 HET LFA C 710 6 HET LFA C 711 6 HET LFA C 712 12 HET LFA C 713 10 HET LFA C 714 8 HET LFA C 715 7 HET LFA C 716 15 HET LFA C 717 12 HET LFA C 718 9 HET LFA C 719 9 HET LFA C 720 7 HET PO4 C 721 5 HETNAM FME N-FORMYLMETHIONINE HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETSYN LFA LIPID FRAGMENT HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 FME 3(C6 H11 N O3 S) FORMUL 1 LYR 3(C26 H42 N2 O2) FORMUL 4 LFA 50(C20 H42) FORMUL 5 OLA 16(C18 H34 O2) FORMUL 8 OLC C21 H40 O4 FORMUL 10 NA 3(NA 1+) FORMUL 29 PO4 2(O4 P 3-) FORMUL 76 HOH *278(H2 O) HELIX 1 AA1 FME A 1 LYS A 25 1 25 HELIX 2 AA2 PRO A 31 LEU A 54 1 24 HELIX 3 AA3 TYR A 68 PHE A 91 1 24 HELIX 4 AA4 ASN A 96 SER A 120 1 25 HELIX 5 AA5 GLY A 122 GLY A 145 1 24 HELIX 6 AA6 GLY A 145 SER A 153 1 9 HELIX 7 AA7 GLY A 155 GLY A 183 1 29 HELIX 8 AA8 GLN A 191 LYS A 220 1 30 HELIX 9 AA9 ILE B 2 LYS B 25 1 24 HELIX 10 AB1 PRO B 31 LEU B 54 1 24 HELIX 11 AB2 TYR B 68 MET B 90 1 23 HELIX 12 AB3 ASN B 96 SER B 120 1 25 HELIX 13 AB4 GLY B 122 GLY B 145 1 24 HELIX 14 AB5 GLY B 145 SER B 153 1 9 HELIX 15 AB6 GLY B 155 GLY B 183 1 29 HELIX 16 AB7 GLN B 191 LYS B 220 1 30 HELIX 17 AB8 ILE C 2 LYS C 25 1 24 HELIX 18 AB9 PRO C 31 LEU C 54 1 24 HELIX 19 AC1 TYR C 68 MET C 90 1 23 HELIX 20 AC2 ASN C 96 SER C 120 1 25 HELIX 21 AC3 GLY C 122 GLY C 145 1 24 HELIX 22 AC4 GLY C 145 SER C 153 1 9 HELIX 23 AC5 GLY C 155 GLY C 183 1 29 HELIX 24 AC6 GLN C 191 LYS C 220 1 30 SHEET 1 AA1 2 PHE A 59 TYR A 61 0 SHEET 2 AA1 2 THR A 64 ILE A 66 -1 O THR A 64 N TYR A 61 LINK C FME A 1 N ILE A 2 1555 1555 1.33 LINK C SER A 206 N LYR A 207 1555 1555 1.34 LINK C LYR A 207 N VAL A 208 1555 1555 1.34 LINK C FME B 1 N ILE B 2 1555 1555 1.34 LINK C SER B 206 N LYR B 207 1555 1555 1.34 LINK C LYR B 207 N VAL B 208 1555 1555 1.34 LINK C FME C 1 N ILE C 2 1555 1555 1.34 LINK C SER C 206 N LYR C 207 1555 1555 1.34 LINK C LYR C 207 N VAL C 208 1555 1555 1.34 LINK OE1 GLU A 34 NA NA A 707 1555 1555 2.82 LINK OE2 GLU A 34 NA NA A 707 1555 1555 2.15 LINK O ALA A 84 NA NA A 707 1555 1555 2.38 LINK OG1 THR A 88 NA NA A 707 1555 1555 2.67 LINK OD2 ASP A 214 NA NA A 707 1555 1555 2.40 LINK OE1 GLU B 34 NA NA B 311 1555 1555 2.54 LINK OE2 GLU B 34 NA NA B 311 1555 1555 2.18 LINK O ALA B 84 NA NA B 311 1555 1555 2.44 LINK OG1 THR B 88 NA NA B 311 1555 1555 2.51 LINK OD2 ASP B 214 NA NA B 311 1555 1555 2.52 LINK OE1 GLU C 34 NA NA C 705 1555 1555 2.47 LINK OE2 GLU C 34 NA NA C 705 1555 1555 2.12 LINK O ALA C 84 NA NA C 705 1555 1555 2.45 LINK OG1 THR C 88 NA NA C 705 1555 1555 2.49 LINK OD2 ASP C 214 NA NA C 705 1555 1555 2.66 CRYST1 68.600 109.600 119.300 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008382 0.00000 HETATM 1 N FME A 1 11.448 24.139 -47.192 1.00 52.77 N HETATM 2 CN FME A 1 11.259 22.820 -47.258 1.00 56.76 C HETATM 3 O1 FME A 1 11.387 22.033 -46.318 1.00 61.37 O HETATM 4 CA FME A 1 11.788 24.806 -45.948 1.00 50.24 C HETATM 5 CB FME A 1 12.190 26.273 -46.180 1.00 51.06 C HETATM 6 CG FME A 1 12.677 26.966 -44.910 1.00 63.29 C HETATM 7 SD FME A 1 14.468 26.757 -44.607 1.00 88.17 S HETATM 8 CE FME A 1 14.586 27.110 -42.853 1.00 86.06 C HETATM 9 C FME A 1 10.624 24.721 -44.962 1.00 42.75 C HETATM 10 O FME A 1 10.825 24.516 -43.770 1.00 44.60 O