HEADER MEMBRANE PROTEIN 20-APR-22 7ZNB TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN INWARD PROTON PUMP XENORHODOPSIN TITLE 2 BCXER IN THE M STATE AT PH 5.2 IN THE PRESENCE OF SODIUM AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENORHODOPSIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS COAHUILENSIS; SOURCE 3 ORGANISM_TAXID: 408580; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINAL, RHODOPSIN, XENORHODOPSIN, ION TRANSPORT, ISOMERIZATION, KEYWDS 2 PHOTOCYCLE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,F.TSYBROV,A.ALEKSEEV,G.BOURENKOV,V.GORDELIY REVDAT 5 07-FEB-24 7ZNB 1 REMARK REVDAT 4 26-JUL-23 7ZNB 1 JRNL REVDAT 3 12-JUL-23 7ZNB 1 JRNL REVDAT 2 31-MAY-23 7ZNB 1 LINK REVDAT 1 10-MAY-23 7ZNB 0 JRNL AUTH K.KOVALEV,F.TSYBROV,A.ALEKSEEV,V.SHEVCHENKO,D.SOLOVIOV, JRNL AUTH 2 S.SILETSKY,G.BOURENKOV,M.AGTHE,M.NIKOLOVA,D.VON STETTEN, JRNL AUTH 3 R.ASTASHKIN,S.BUKHDRUKER,I.CHIZHOV,A.ROYANT,A.KUZMIN, JRNL AUTH 4 I.GUSHCHIN,R.ROSSELLI,F.RODRIGUEZ-VALERA,N.ILYINSKIY, JRNL AUTH 5 A.ROGACHEV,V.BORSHCHEVSKIY,T.R.SCHNEIDER,E.BAMBERG, JRNL AUTH 6 V.GORDELIY JRNL TITL MECHANISMS OF INWARD TRANSMEMBRANE PROTON TRANSLOCATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 970 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37386213 JRNL DOI 10.1038/S41594-023-01020-9 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 59830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 45.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 637 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.345 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6142 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6653 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8165 ; 1.022 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15275 ; 1.045 ; 1.545 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 697 ; 4.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;27.655 ;18.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;13.906 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.984 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6290 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1324 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 223 B 1 223 7717 0.090 0.050 REMARK 3 2 A 1 223 C 1 223 7780 0.090 0.050 REMARK 3 3 B 1 223 C 1 223 7718 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ZNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62940 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.738 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.94800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1XIO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA/K-PI PH 8.2 CRYSTALS SOAKED REMARK 280 IN 1.2 M NA/K-PI PH 5.2 BEFORE HARVESTING, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 TYR A 226 REMARK 465 VAL A 227 REMARK 465 HIS A 228 REMARK 465 ASN A 229 REMARK 465 TYR B 61 REMARK 465 ASP B 62 REMARK 465 ASP B 63 REMARK 465 SER B 224 REMARK 465 SER B 225 REMARK 465 TYR B 226 REMARK 465 VAL B 227 REMARK 465 HIS B 228 REMARK 465 ASN B 229 REMARK 465 ASP C 62 REMARK 465 SER C 225 REMARK 465 TYR C 226 REMARK 465 VAL C 227 REMARK 465 HIS C 228 REMARK 465 ASN C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 ASP A 63 CG OD1 OD2 REMARK 470 LYS A 94 NZ REMARK 470 LYS A 220 CE NZ REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 THR B 64 OG1 CG2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 LYS C 25 CD CE NZ REMARK 470 ASP C 63 CG OD1 OD2 REMARK 470 ARG C 160 NE CZ NH1 NH2 REMARK 470 ARG C 164 CZ NH1 NH2 REMARK 470 LYS C 220 CE NZ REMARK 470 SER C 224 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 665 2.07 REMARK 500 O HOH A 670 O HOH A 675 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 208 -52.69 -121.59 REMARK 500 VAL B 208 -52.44 -121.16 REMARK 500 VAL C 208 -52.46 -120.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 501 REMARK 610 LFA A 502 REMARK 610 OLA A 503 REMARK 610 OLA A 505 REMARK 610 OLA A 506 REMARK 610 OLA A 507 REMARK 610 OLA A 508 REMARK 610 LFA A 509 REMARK 610 LFA A 510 REMARK 610 LFA A 511 REMARK 610 LFA A 512 REMARK 610 LFA A 513 REMARK 610 LFA A 514 REMARK 610 LFA A 515 REMARK 610 LFA A 516 REMARK 610 LFA A 517 REMARK 610 LFA A 518 REMARK 610 LFA A 519 REMARK 610 LFA A 520 REMARK 610 LFA A 521 REMARK 610 LFA B 301 REMARK 610 LFA B 302 REMARK 610 OLA B 303 REMARK 610 OLA B 304 REMARK 610 OLA B 305 REMARK 610 OLA B 306 REMARK 610 OLA B 307 REMARK 610 OLA B 308 REMARK 610 LFA B 309 REMARK 610 LFA B 310 REMARK 610 LFA B 311 REMARK 610 LFA B 312 REMARK 610 LFA B 313 REMARK 610 LFA B 314 REMARK 610 LFA B 315 REMARK 610 LFA B 316 REMARK 610 LFA B 317 REMARK 610 LFA B 318 REMARK 610 LFA B 319 REMARK 610 LFA B 320 REMARK 610 LFA B 321 REMARK 610 LFA B 322 REMARK 610 LFA B 323 REMARK 610 LFA C 301 REMARK 610 OLA C 302 REMARK 610 OLA C 303 REMARK 610 OLA C 304 REMARK 610 OLA C 305 REMARK 610 LFA C 306 REMARK 610 LFA C 307 REMARK 610 LFA C 308 REMARK 610 LFA C 309 REMARK 610 LFA C 310 REMARK 610 LFA C 311 REMARK 610 LFA C 312 REMARK 610 LFA C 313 REMARK 610 LFA C 314 REMARK 610 LFA C 315 REMARK 610 LFA C 316 DBREF 7ZNB A 1 229 PDB 7ZNB 7ZNB 1 229 DBREF 7ZNB B 1 229 PDB 7ZNB 7ZNB 1 229 DBREF 7ZNB C 1 229 PDB 7ZNB 7ZNB 1 229 SEQRES 1 A 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 A 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 A 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 A 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 A 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 A 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 A 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 A 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 A 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 A 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 A 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 A 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 A 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 A 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 A 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 A 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 A 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 A 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 B 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 B 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 B 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 B 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 B 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 B 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 B 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 B 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 B 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 B 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 B 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 B 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 B 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 B 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 B 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 B 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 B 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 B 229 HIS GLN SER SER TYR VAL HIS ASN SEQRES 1 C 229 FME ILE SER ILE LEU HIS TYR GLY TYR SER PHE ILE MET SEQRES 2 C 229 LEU LEU GLY ALA LEU TYR PHE TYR LEU LEU SER LYS ASP SEQRES 3 C 229 PRO LYS GLY VAL PRO ALA SER GLU TYR LEU ILE ALA MET SEQRES 4 C 229 VAL ILE PRO LEU TRP SER GLY ALA ALA TYR LEU SER ILE SEQRES 5 C 229 ALA LEU GLY GLN GLY LEU PHE GLN TYR ASP ASP THR THR SEQRES 6 C 229 ILE TYR TYR ALA ARG TYR ILE ASP TRP VAL ILE SER THR SEQRES 7 C 229 PRO LEU LEU LEU ALA ALA LEU ALA LEU THR ALA MET PHE SEQRES 8 C 229 GLY GLY LYS LYS ASN LEU THR LEU LEU PHE SER LEU VAL SEQRES 9 C 229 ALA LEU ASP VAL PHE MET ILE ILE THR GLY PHE VAL ALA SEQRES 10 C 229 ASP LEU SER ILE GLY THR THR LYS TYR ILE TRP TYR SER SEQRES 11 C 229 LEU GLY VAL ILE ALA LEU ILE ILE ILE LEU VAL ILE THR SEQRES 12 C 229 PHE GLY PRO LEU ARG ARG ILE ALA LEU SER ASN GLY THR SEQRES 13 C 229 ARG LEU ALA ARG HIS TYR THR ARG VAL ALA ILE TYR LEU SEQRES 14 C 229 SER ALA LEU TRP VAL CYS TYR PRO THR ALA TRP LEU LEU SEQRES 15 C 229 GLY PRO SER GLY LEU GLY LEU ALA GLN GLU LEU THR GLU SEQRES 16 C 229 VAL LEU VAL PHE ILE ILE LEU PRO ILE PHE SER LYR VAL SEQRES 17 C 229 GLY PHE SER ILE VAL ASP LEU HIS GLY LEU ARG LYS LEU SEQRES 18 C 229 HIS GLN SER SER TYR VAL HIS ASN HET FME A 1 10 HET LYR A 207 29 HET FME B 1 10 HET LYR B 207 29 HET FME C 1 10 HET LYR C 207 29 HET LFA A 501 6 HET LFA A 502 7 HET OLA A 503 11 HET OLA A 504 20 HET OLA A 505 15 HET OLA A 506 11 HET OLA A 507 19 HET OLA A 508 13 HET LFA A 509 9 HET LFA A 510 9 HET LFA A 511 7 HET LFA A 512 12 HET LFA A 513 7 HET LFA A 514 8 HET LFA A 515 6 HET LFA A 516 3 HET LFA A 517 5 HET LFA A 518 7 HET LFA A 519 7 HET LFA A 520 10 HET LFA A 521 6 HET PO4 A 522 5 HET LFA B 301 6 HET LFA B 302 9 HET OLA B 303 14 HET OLA B 304 14 HET OLA B 305 10 HET OLA B 306 17 HET OLA B 307 16 HET OLA B 308 19 HET LFA B 309 6 HET LFA B 310 7 HET LFA B 311 5 HET LFA B 312 5 HET LFA B 313 6 HET LFA B 314 15 HET LFA B 315 8 HET LFA B 316 8 HET LFA B 317 16 HET LFA B 318 12 HET LFA B 319 9 HET LFA B 320 12 HET LFA B 321 10 HET LFA B 322 12 HET LFA B 323 13 HET LFA C 301 17 HET OLA C 302 16 HET OLA C 303 16 HET OLA C 304 13 HET OLA C 305 15 HET LFA C 306 10 HET LFA C 307 11 HET LFA C 308 4 HET LFA C 309 8 HET LFA C 310 4 HET LFA C 311 8 HET LFA C 312 16 HET LFA C 313 12 HET LFA C 314 10 HET LFA C 315 9 HET LFA C 316 11 HET PO4 C 317 5 HETNAM FME N-FORMYLMETHIONINE HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM OLA OLEIC ACID HETNAM PO4 PHOSPHATE ION HETSYN LFA LIPID FRAGMENT FORMUL 1 FME 3(C6 H11 N O3 S) FORMUL 1 LYR 3(C26 H42 N2 O2) FORMUL 4 LFA 44(C20 H42) FORMUL 6 OLA 16(C18 H34 O2) FORMUL 25 PO4 2(O4 P 3-) FORMUL 66 HOH *240(H2 O) HELIX 1 AA1 FME A 1 LYS A 25 1 25 HELIX 2 AA2 PRO A 31 LEU A 54 1 24 HELIX 3 AA3 TYR A 68 MET A 90 1 23 HELIX 4 AA4 ASN A 96 SER A 120 1 25 HELIX 5 AA5 GLY A 122 GLY A 145 1 24 HELIX 6 AA6 GLY A 145 SER A 153 1 9 HELIX 7 AA7 GLY A 155 GLY A 183 1 29 HELIX 8 AA8 GLN A 191 VAL A 208 1 18 HELIX 9 AA9 VAL A 208 LYS A 220 1 13 HELIX 10 AB1 ILE B 2 LYS B 25 1 24 HELIX 11 AB2 PRO B 31 LEU B 54 1 24 HELIX 12 AB3 TYR B 68 PHE B 91 1 24 HELIX 13 AB4 ASN B 96 SER B 120 1 25 HELIX 14 AB5 GLY B 122 GLY B 145 1 24 HELIX 15 AB6 GLY B 145 SER B 153 1 9 HELIX 16 AB7 GLY B 155 GLY B 183 1 29 HELIX 17 AB8 GLN B 191 VAL B 208 1 18 HELIX 18 AB9 VAL B 208 LYS B 220 1 13 HELIX 19 AC1 LEU B 221 GLN B 223 5 3 HELIX 20 AC2 ILE C 2 LYS C 25 1 24 HELIX 21 AC3 PRO C 31 LEU C 54 1 24 HELIX 22 AC4 TYR C 68 MET C 90 1 23 HELIX 23 AC5 ASN C 96 SER C 120 1 25 HELIX 24 AC6 GLY C 122 GLY C 145 1 24 HELIX 25 AC7 GLY C 145 SER C 153 1 9 HELIX 26 AC8 GLY C 155 GLY C 183 1 29 HELIX 27 AC9 GLN C 191 VAL C 208 1 18 HELIX 28 AD1 VAL C 208 LYS C 220 1 13 SHEET 1 AA1 2 PHE A 59 TYR A 61 0 SHEET 2 AA1 2 THR A 64 ILE A 66 -1 O THR A 64 N TYR A 61 SHEET 1 AA2 2 PHE C 59 GLN C 60 0 SHEET 2 AA2 2 THR C 65 ILE C 66 -1 O ILE C 66 N PHE C 59 LINK C FME A 1 N ILE A 2 1555 1555 1.34 LINK C ASER A 206 N LYR A 207 1555 1555 1.34 LINK C BSER A 206 N LYR A 207 1555 1555 1.34 LINK C LYR A 207 N VAL A 208 1555 1555 1.34 LINK C FME B 1 N ILE B 2 1555 1555 1.34 LINK C ASER B 206 N LYR B 207 1555 1555 1.34 LINK C BSER B 206 N LYR B 207 1555 1555 1.34 LINK C LYR B 207 N VAL B 208 1555 1555 1.34 LINK C FME C 1 N ILE C 2 1555 1555 1.34 LINK C ASER C 206 N LYR C 207 1555 1555 1.34 LINK C BSER C 206 N LYR C 207 1555 1555 1.34 LINK C LYR C 207 N VAL C 208 1555 1555 1.34 CRYST1 68.500 109.500 119.000 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014599 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008403 0.00000 HETATM 1 N FME A 1 11.431 23.697 -47.142 1.00 50.56 N HETATM 2 CN FME A 1 11.150 22.397 -47.198 1.00 51.01 C HETATM 3 O1 FME A 1 11.152 21.627 -46.235 1.00 42.92 O HETATM 4 CA FME A 1 11.796 24.362 -45.903 1.00 53.58 C HETATM 5 CB FME A 1 12.223 25.815 -46.159 1.00 57.97 C HETATM 6 CG FME A 1 12.509 26.587 -44.881 1.00 70.44 C HETATM 7 SD FME A 1 13.583 28.022 -45.154 1.00108.46 S HETATM 8 CE FME A 1 13.416 28.871 -43.584 1.00 92.92 C HETATM 9 C FME A 1 10.645 24.325 -44.899 1.00 44.29 C HETATM 10 O FME A 1 10.862 24.123 -43.707 1.00 41.96 O