HEADER ANTIMICROBIAL PROTEIN 24-APR-22 7ZO2 TITLE L1 METALLO-BETA-LACTAMASE COMPLEX WITH HYDROLYSED DORIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ANTIBIOTIC, LIGAND, ZINC, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 4 13-NOV-24 7ZO2 1 REMARK REVDAT 3 07-FEB-24 7ZO2 1 REMARK REVDAT 2 20-SEP-23 7ZO2 1 JRNL REVDAT 1 08-MAR-23 7ZO2 0 JRNL AUTH P.HINCHLIFFE,K.CALVOPINA,P.RABE,M.F.MOJICA,C.J.SCHOFIELD, JRNL AUTH 2 G.I.DMITRIENKO,R.A.BONOMO,A.J.VILA,J.SPENCER JRNL TITL INTERACTIONS OF HYDROLYZED BETA-LACTAMS WITH THE L1 JRNL TITL 2 METALLO-BETA-LACTAMASE: CRYSTALLOGRAPHY SUPPORTS JRNL TITL 3 STEREOSELECTIVE BINDING OF CEPHEM/CARBAPENEM PRODUCTS. JRNL REF J.BIOL.CHEM. V. 299 04606 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924941 JRNL DOI 10.1016/J.JBC.2023.104606 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.8600 - 3.9800 1.00 2919 127 0.1537 0.1612 REMARK 3 2 3.9800 - 3.1600 1.00 2738 141 0.1476 0.1875 REMARK 3 3 3.1600 - 2.7600 1.00 2708 134 0.1714 0.2111 REMARK 3 4 2.7600 - 2.5000 1.00 2671 132 0.1676 0.2099 REMARK 3 5 2.5000 - 2.3300 1.00 2658 142 0.1749 0.1947 REMARK 3 6 2.3300 - 2.1900 1.00 2629 156 0.1780 0.2007 REMARK 3 7 2.1900 - 2.0800 1.00 2641 134 0.1784 0.2037 REMARK 3 8 2.0800 - 1.9900 1.00 2625 134 0.1833 0.2037 REMARK 3 9 1.9900 - 1.9100 1.00 2637 139 0.1855 0.2221 REMARK 3 10 1.9100 - 1.8500 1.00 2590 147 0.2119 0.2421 REMARK 3 11 1.8500 - 1.7900 1.00 2585 145 0.2113 0.2428 REMARK 3 12 1.7900 - 1.7400 1.00 2645 127 0.2212 0.2636 REMARK 3 13 1.7400 - 1.6900 1.00 2587 138 0.2361 0.2743 REMARK 3 14 1.6900 - 1.6500 1.00 2612 130 0.2585 0.3095 REMARK 3 15 1.6500 - 1.6100 0.99 2582 155 0.2806 0.2941 REMARK 3 16 1.6100 - 1.5800 1.00 2580 134 0.3130 0.2825 REMARK 3 17 1.5800 - 1.5500 0.99 2597 118 0.3705 0.3916 REMARK 3 18 1.5500 - 1.5200 0.99 2604 113 0.4026 0.3927 REMARK 3 19 1.5200 - 1.4900 0.99 2570 153 0.4464 0.4520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6901 12.1618 8.7993 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.3667 REMARK 3 T33: 0.2854 T12: 0.0633 REMARK 3 T13: -0.0198 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.1900 L22: 1.1568 REMARK 3 L33: 0.5607 L12: -0.3711 REMARK 3 L13: -0.1801 L23: 0.8716 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.0870 S13: 0.1051 REMARK 3 S21: 0.3552 S22: 0.1466 S23: 0.0065 REMARK 3 S31: 0.1018 S32: -0.0968 S33: -0.0842 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5864 20.4754 7.6892 REMARK 3 T TENSOR REMARK 3 T11: 0.3317 T22: 0.2395 REMARK 3 T33: 0.2769 T12: 0.0785 REMARK 3 T13: -0.0027 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.8032 L22: 4.5128 REMARK 3 L33: 3.2916 L12: 0.7943 REMARK 3 L13: 0.3570 L23: 1.7641 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.0096 S13: 0.4517 REMARK 3 S21: -0.1038 S22: 0.0862 S23: -0.0399 REMARK 3 S31: -0.1513 S32: -0.1342 S33: 0.0176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0012 15.4106 7.1877 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.2435 REMARK 3 T33: 0.2062 T12: 0.0528 REMARK 3 T13: 0.0086 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 2.8518 L22: 2.3244 REMARK 3 L33: 1.9753 L12: -0.2013 REMARK 3 L13: 1.0839 L23: -1.2047 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: -0.0428 S13: 0.1397 REMARK 3 S21: -0.0281 S22: 0.0551 S23: -0.3018 REMARK 3 S31: -0.1465 S32: 0.0288 S33: 0.1050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8756 7.9534 9.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.2799 REMARK 3 T33: 0.2057 T12: 0.0559 REMARK 3 T13: -0.0057 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.6346 L22: 0.7913 REMARK 3 L33: 0.8769 L12: -0.1416 REMARK 3 L13: -0.1686 L23: -0.4840 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: -0.0964 S13: 0.1207 REMARK 3 S21: -0.0031 S22: 0.0997 S23: -0.0126 REMARK 3 S31: 0.0706 S32: -0.0021 S33: 0.0327 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8649 8.6434 21.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.3611 T22: 0.3577 REMARK 3 T33: 0.1903 T12: 0.1065 REMARK 3 T13: 0.0109 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.5631 L22: 4.2285 REMARK 3 L33: 1.0927 L12: 0.5085 REMARK 3 L13: 0.0725 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.1341 S12: -0.3635 S13: 0.1355 REMARK 3 S21: 0.2387 S22: 0.1060 S23: 0.0335 REMARK 3 S31: -0.1195 S32: -0.0743 S33: 0.0489 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2702 2.5620 29.4911 REMARK 3 T TENSOR REMARK 3 T11: 0.4520 T22: 0.4783 REMARK 3 T33: 0.1973 T12: 0.1761 REMARK 3 T13: 0.0259 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 5.5062 L22: 3.8592 REMARK 3 L33: 8.3912 L12: 3.6685 REMARK 3 L13: 1.7869 L23: 4.5123 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: -0.6185 S13: -0.0322 REMARK 3 S21: 0.2239 S22: -0.0182 S23: -0.0779 REMARK 3 S31: 0.1853 S32: 0.0390 S33: 0.0582 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6689 19.2792 23.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.3810 REMARK 3 T33: 0.2767 T12: 0.1439 REMARK 3 T13: 0.0290 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 3.2869 L22: 1.2192 REMARK 3 L33: 4.9409 L12: 0.1470 REMARK 3 L13: 2.6172 L23: -0.0933 REMARK 3 S TENSOR REMARK 3 S11: -0.2035 S12: -0.3790 S13: 0.2616 REMARK 3 S21: 0.3767 S22: 0.2131 S23: 0.0039 REMARK 3 S31: -0.1632 S32: -0.3564 S33: -0.0149 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2040 0.7843 30.8648 REMARK 3 T TENSOR REMARK 3 T11: 0.4562 T22: 0.4733 REMARK 3 T33: 0.2534 T12: 0.1030 REMARK 3 T13: 0.0787 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.7155 L22: 2.4327 REMARK 3 L33: 0.9706 L12: 2.8325 REMARK 3 L13: -1.0227 L23: -1.1500 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: -0.4102 S13: -0.0527 REMARK 3 S21: 0.3804 S22: -0.1129 S23: 0.1348 REMARK 3 S31: -0.1048 S32: -0.3047 S33: 0.1070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52983 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 66.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.72700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.45400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.72700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.45400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.72700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.45400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.72700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.45400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -177.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.43500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 105.43500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 625 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 430 O HOH A 546 2.12 REMARK 500 NZ LYS A 176 O HOH A 402 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 154.99 69.67 REMARK 500 ALA A 85 54.57 -95.69 REMARK 500 TYR A 199 72.79 -153.02 REMARK 500 CYS A 218 65.10 -154.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 98.5 REMARK 620 3 HIS A 160 NE2 98.4 105.2 REMARK 620 4 DQM A 305 OAX 117.9 118.1 115.7 REMARK 620 5 DQM A 305 OAD 171.1 90.4 79.6 56.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 93.4 REMARK 620 3 HIS A 225 NE2 90.5 95.9 REMARK 620 4 DQM A 305 OAX 101.8 110.0 150.4 REMARK 620 5 DQM A 305 NAN 93.4 170.5 77.5 74.9 REMARK 620 6 DQM A 305 OAH 172.0 94.6 88.7 75.4 78.6 REMARK 620 N 1 2 3 4 5 DBREF 7ZO2 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7ZO2 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7ZO2 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET DQM A 305 52 HET CL A 306 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM DQM (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-BIS(OXIDANYL)- HETNAM 2 DQM 1-OXIDANYLIDENE-BUTAN-2-YL]-3-METHYL-4-[(3~{S},5~{S})- HETNAM 3 DQM 5-[(SULFAMOYLAMINO)METHYL]PYRROLIDIN-3-YL]SULFANYL-3, HETNAM 4 DQM 4-DIHYDRO-2~{H}-PYRROLE-5-CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETSYN DQM HYDROLYZED DORIPENEM FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 DQM C15 H26 N4 O7 S2 FORMUL 7 CL CL 1- FORMUL 8 HOH *226(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 ALA A 215 1 15 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ALA A 235 ALA A 239 5 5 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O THR A 30 N ILE A 26 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O VAL A 50 N VAL A 43 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O LEU A 81 N LEU A 51 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O PHE A 152 N ILE A 145 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O VAL A 178 N ASP A 171 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O VAL A 220 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.03 LINK NE2 HIS A 84 ZN ZN A 302 1555 1555 2.15 LINK ND1 HIS A 86 ZN ZN A 302 1555 1555 2.15 LINK OD2 ASP A 88 ZN ZN A 301 1555 1555 2.07 LINK NE2 HIS A 89 ZN ZN A 301 1555 1555 2.18 LINK NE2 HIS A 160 ZN ZN A 302 1555 1555 2.10 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.22 LINK ZN ZN A 301 OAX DQM A 305 1555 1555 2.34 LINK ZN ZN A 301 NAN DQM A 305 1555 1555 2.11 LINK ZN ZN A 301 OAH DQM A 305 1555 1555 2.43 LINK ZN ZN A 302 OAX DQM A 305 1555 1555 1.91 LINK ZN ZN A 302 OAD DQM A 305 1555 1555 2.63 CRYST1 105.435 105.435 98.181 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009485 0.005476 0.000000 0.00000 SCALE2 0.000000 0.010952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010185 0.00000