HEADER ANTIMICROBIAL PROTEIN 24-APR-22 7ZO3 TITLE L1 METALLO-BETA-LACTAMASE IN COMPLEX WITH HYDROLYSED TEBIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ANTIBIOTIC, LIGAND, ZINC, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 4 23-OCT-24 7ZO3 1 REMARK REVDAT 3 07-FEB-24 7ZO3 1 REMARK REVDAT 2 20-SEP-23 7ZO3 1 JRNL REVDAT 1 08-MAR-23 7ZO3 0 JRNL AUTH P.HINCHLIFFE,K.CALVOPINA,P.RABE,M.F.MOJICA,C.J.SCHOFIELD, JRNL AUTH 2 G.I.DMITRIENKO,R.A.BONOMO,A.J.VILA,J.SPENCER JRNL TITL INTERACTIONS OF HYDROLYZED BETA-LACTAMS WITH THE L1 JRNL TITL 2 METALLO-BETA-LACTAMASE: CRYSTALLOGRAPHY SUPPORTS JRNL TITL 3 STEREOSELECTIVE BINDING OF CEPHEM/CARBAPENEM PRODUCTS. JRNL REF J.BIOL.CHEM. V. 299 04606 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924941 JRNL DOI 10.1016/J.JBC.2023.104606 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 56733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.8300 - 3.8800 1.00 3117 137 0.1508 0.1607 REMARK 3 2 3.8800 - 3.0800 1.00 2924 157 0.1393 0.1684 REMARK 3 3 3.0800 - 2.6900 1.00 2886 141 0.1587 0.2038 REMARK 3 4 2.6900 - 2.4500 1.00 2831 163 0.1584 0.1760 REMARK 3 5 2.4500 - 2.2700 1.00 2873 126 0.1654 0.1825 REMARK 3 6 2.2700 - 2.1400 1.00 2844 129 0.1725 0.1900 REMARK 3 7 2.1400 - 2.0300 0.99 2803 139 0.1748 0.2106 REMARK 3 8 2.0300 - 1.9400 0.99 2792 163 0.1776 0.2489 REMARK 3 9 1.9400 - 1.8700 0.99 2800 138 0.1972 0.2319 REMARK 3 10 1.8700 - 1.8000 0.99 2787 140 0.2171 0.2265 REMARK 3 11 1.8000 - 1.7500 0.99 2785 144 0.2238 0.2377 REMARK 3 12 1.7500 - 1.7000 0.99 2747 140 0.2296 0.2614 REMARK 3 13 1.7000 - 1.6500 0.99 2775 153 0.2481 0.2673 REMARK 3 14 1.6500 - 1.6100 0.99 2757 158 0.2829 0.2787 REMARK 3 15 1.6100 - 1.5700 0.98 2733 143 0.2987 0.3088 REMARK 3 16 1.5700 - 1.5400 0.98 2763 127 0.3338 0.3448 REMARK 3 17 1.5400 - 1.5100 0.99 2726 155 0.3711 0.3446 REMARK 3 18 1.5100 - 1.4800 0.97 2703 138 0.3943 0.4239 REMARK 3 19 1.4800 - 1.4600 0.83 2296 117 0.4115 0.4204 REMARK 3 20 1.4600 - 1.4300 0.37 1035 48 0.4572 0.4258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5379 16.0917 8.0497 REMARK 3 T TENSOR REMARK 3 T11: 0.3488 T22: 0.3556 REMARK 3 T33: 0.2752 T12: 0.0938 REMARK 3 T13: 0.0798 T23: 0.1053 REMARK 3 L TENSOR REMARK 3 L11: 0.3342 L22: 1.5830 REMARK 3 L33: 1.4857 L12: -0.3765 REMARK 3 L13: -0.0100 L23: 1.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: 0.0531 S13: 0.1724 REMARK 3 S21: -0.1140 S22: -0.0266 S23: -0.1002 REMARK 3 S31: -0.2323 S32: -0.3830 S33: -0.1318 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9978 15.6324 7.1169 REMARK 3 T TENSOR REMARK 3 T11: 0.2767 T22: 0.1961 REMARK 3 T33: 0.2372 T12: 0.0659 REMARK 3 T13: 0.1399 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.4508 L22: 5.9658 REMARK 3 L33: 4.0535 L12: -0.9119 REMARK 3 L13: 1.1979 L23: -1.4335 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: 0.1566 S13: 0.2432 REMARK 3 S21: -0.3052 S22: 0.0912 S23: -0.5753 REMARK 3 S31: -0.3768 S32: -0.0521 S33: -0.1515 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8271 7.9857 9.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.2276 REMARK 3 T33: 0.2846 T12: 0.0271 REMARK 3 T13: 0.0441 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.4888 L22: 1.0944 REMARK 3 L33: 1.5221 L12: -0.3516 REMARK 3 L13: 0.1800 L23: 0.2991 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: 0.0387 S13: 0.2105 REMARK 3 S21: -0.0562 S22: 0.0492 S23: -0.1606 REMARK 3 S31: -0.0226 S32: -0.0399 S33: -0.1341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9005 8.7877 21.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.2529 REMARK 3 T33: 0.2727 T12: 0.0477 REMARK 3 T13: 0.0175 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.9300 L22: 2.2936 REMARK 3 L33: 1.4793 L12: 0.5428 REMARK 3 L13: -0.3333 L23: 0.2994 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.1024 S13: 0.0920 REMARK 3 S21: 0.1123 S22: 0.1110 S23: -0.2062 REMARK 3 S31: -0.1328 S32: -0.1045 S33: -0.1582 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3530 2.6929 29.4571 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2650 REMARK 3 T33: 0.1875 T12: 0.0488 REMARK 3 T13: -0.0233 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 9.4151 L22: 6.0763 REMARK 3 L33: 9.0036 L12: 7.0123 REMARK 3 L13: 6.3128 L23: 6.7601 REMARK 3 S TENSOR REMARK 3 S11: 0.1942 S12: -0.3597 S13: -0.0682 REMARK 3 S21: 0.0698 S22: -0.1881 S23: -0.1940 REMARK 3 S31: 0.3016 S32: -0.2191 S33: -0.0243 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3896 19.8138 23.7714 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.3112 REMARK 3 T33: 0.2519 T12: 0.0892 REMARK 3 T13: 0.0663 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.3919 L22: 3.1828 REMARK 3 L33: 4.9661 L12: 0.1054 REMARK 3 L13: 1.5243 L23: 1.2089 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: 0.0024 S13: 0.1203 REMARK 3 S21: 0.0242 S22: 0.0546 S23: -0.1377 REMARK 3 S31: -0.3048 S32: -0.4943 S33: -0.1266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2888 0.9372 30.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.3869 T22: 0.3630 REMARK 3 T33: 0.2049 T12: 0.0034 REMARK 3 T13: 0.0005 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 7.0251 L22: 3.8374 REMARK 3 L33: 1.5972 L12: 5.0711 REMARK 3 L13: -1.5831 L23: -0.6682 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0857 S13: -0.1030 REMARK 3 S21: 0.6123 S22: 0.0481 S23: -0.0918 REMARK 3 S31: 0.2641 S32: -0.3184 S33: -0.0295 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59030 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 66.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.74700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.49400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.74700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.49400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.74700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.49400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.74700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.49400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.27400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 105.27400 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 638 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 610 O HOH A 615 1.87 REMARK 500 O HOH A 487 O HOH A 577 2.03 REMARK 500 O HOH A 615 O HOH A 627 2.11 REMARK 500 O HOH A 594 O HOH A 599 2.15 REMARK 500 O HOH A 574 O HOH A 620 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 414 O HOH A 605 12555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 154.31 71.43 REMARK 500 ALA A 85 52.71 -93.63 REMARK 500 ASP A 171 -168.21 -111.95 REMARK 500 TYR A 199 73.79 -151.78 REMARK 500 CYS A 218 68.30 -155.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 2 VAL A 3 -145.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 99.3 REMARK 620 3 HIS A 160 NE2 98.3 110.7 REMARK 620 4 JNQ A 306 O21 166.9 93.3 80.6 REMARK 620 5 JNQ A 306 O22 116.3 105.9 123.7 55.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 96.0 REMARK 620 3 HIS A 225 NE2 93.9 97.6 REMARK 620 4 JNQ A 306 N15 99.5 163.2 88.1 REMARK 620 5 JNQ A 306 O01 173.2 90.7 86.3 73.7 REMARK 620 N 1 2 3 4 DBREF 7ZO3 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7ZO3 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7ZO3 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET JNQ A 306 47 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM JNQ (2S,3R,4S)-2-[(2S,3R)-1,3-BIS(OXIDANYL)-1- HETNAM 2 JNQ OXIDANYLIDENE-BUTAN-2-YL]-4-[1-(4,5-DIHYDRO-1,3- HETNAM 3 JNQ THIAZOL-2-YL)AZETIDIN-3-YL]SULFANYL-3-METHYL-3,4- HETNAM 4 JNQ DIHYDRO-2H-PYRROLE-5-CARBOXYLIC ACID HETSYN JNQ HYDROLYSED TEBIPENEM FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 JNQ C16 H23 N3 O5 S2 FORMUL 8 HOH *241(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 ALA A 215 1 15 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ASP A 232 ALA A 239 5 8 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O GLN A 32 N LEU A 24 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O VAL A 50 N VAL A 43 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O ARG A 78 N ALA A 49 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O PHE A 152 N ILE A 145 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O TYR A 182 N TRP A 167 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O VAL A 220 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.08 LINK NE2 HIS A 84 ZN ZN A 302 1555 1555 2.17 LINK ND1 HIS A 86 ZN ZN A 302 1555 1555 2.14 LINK OD2 ASP A 88 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 89 ZN ZN A 301 1555 1555 2.15 LINK NE2 HIS A 160 ZN ZN A 302 1555 1555 2.11 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.16 LINK ZN ZN A 301 N15 JNQ A 306 1555 1555 2.05 LINK ZN ZN A 301 O01 JNQ A 306 1555 1555 2.36 LINK ZN ZN A 302 O21 JNQ A 306 1555 1555 2.64 LINK ZN ZN A 302 O22 JNQ A 306 1555 1555 1.91 CRYST1 105.274 105.274 98.241 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009499 0.005484 0.000000 0.00000 SCALE2 0.000000 0.010969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010179 0.00000