HEADER ANTIMICROBIAL PROTEIN 24-APR-22 7ZO5 TITLE L1 METALLO-BETA-LACTAMASE IN COMPLEX WITH A MECILLINAM DEGRADATION TITLE 2 PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ANTIBIOTIC, LIGAND, ZINC, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 07-FEB-24 7ZO5 1 REMARK REVDAT 2 20-SEP-23 7ZO5 1 JRNL ATOM REVDAT 1 08-MAR-23 7ZO5 0 JRNL AUTH P.HINCHLIFFE,K.CALVOPINA,P.RABE,M.F.MOJICA,C.J.SCHOFIELD, JRNL AUTH 2 G.I.DMITRIENKO,R.A.BONOMO,A.J.VILA,J.SPENCER JRNL TITL INTERACTIONS OF HYDROLYZED BETA-LACTAMS WITH THE L1 JRNL TITL 2 METALLO-BETA-LACTAMASE: CRYSTALLOGRAPHY SUPPORTS JRNL TITL 3 STEREOSELECTIVE BINDING OF CEPHEM/CARBAPENEM PRODUCTS. JRNL REF J.BIOL.CHEM. V. 299 04606 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924941 JRNL DOI 10.1016/J.JBC.2023.104606 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5300 - 3.9400 1.00 3010 132 0.1517 0.1582 REMARK 3 2 3.9400 - 3.1300 1.00 2800 155 0.1328 0.1449 REMARK 3 3 3.1300 - 2.7400 1.00 2783 133 0.1484 0.1797 REMARK 3 4 2.7400 - 2.4900 1.00 2742 161 0.1384 0.1457 REMARK 3 5 2.4900 - 2.3100 1.00 2755 118 0.1392 0.1736 REMARK 3 6 2.3100 - 2.1700 1.00 2753 123 0.1385 0.1401 REMARK 3 7 2.1700 - 2.0600 1.00 2704 140 0.1432 0.1926 REMARK 3 8 2.0600 - 1.9700 1.00 2721 140 0.1489 0.1997 REMARK 3 9 1.9700 - 1.9000 1.00 2691 149 0.1605 0.2113 REMARK 3 10 1.9000 - 1.8300 1.00 2702 136 0.1750 0.2201 REMARK 3 11 1.8300 - 1.7700 1.00 2694 146 0.1885 0.2499 REMARK 3 12 1.7700 - 1.7200 1.00 2696 126 0.1944 0.2227 REMARK 3 13 1.7200 - 1.6800 1.00 2684 144 0.2116 0.2456 REMARK 3 14 1.6800 - 1.6400 1.00 2692 145 0.2216 0.2691 REMARK 3 15 1.6400 - 1.6000 1.00 2660 150 0.2418 0.2638 REMARK 3 16 1.6000 - 1.5700 1.00 2703 128 0.2584 0.2836 REMARK 3 17 1.5700 - 1.5300 1.00 2648 145 0.2861 0.2910 REMARK 3 18 1.5300 - 1.5100 1.00 2670 145 0.2892 0.3001 REMARK 3 19 1.5100 - 1.4800 0.99 2678 140 0.3340 0.3421 REMARK 3 20 1.4800 - 1.4500 0.99 2656 136 0.3515 0.3778 REMARK 3 21 1.4500 - 1.4300 0.99 2617 123 0.3708 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2485 31.0088 24.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.3273 REMARK 3 T33: 0.2368 T12: -0.0196 REMARK 3 T13: -0.0227 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 2.8572 L22: 1.9980 REMARK 3 L33: 3.8943 L12: -1.6221 REMARK 3 L13: -2.7919 L23: 2.7354 REMARK 3 S TENSOR REMARK 3 S11: -0.2397 S12: -0.3297 S13: -0.0985 REMARK 3 S21: 0.1911 S22: 0.1829 S23: 0.1889 REMARK 3 S31: 0.3353 S32: -0.0180 S33: 0.0378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4810 43.4360 24.0327 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.2494 REMARK 3 T33: 0.1880 T12: 0.0043 REMARK 3 T13: 0.0108 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 5.3945 L22: 4.6546 REMARK 3 L33: 3.0088 L12: -1.4252 REMARK 3 L13: -0.3313 L23: 0.7629 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: 0.0718 S13: 0.3218 REMARK 3 S21: -0.1770 S22: -0.0614 S23: 0.3798 REMARK 3 S31: -0.1232 S32: -0.3635 S33: -0.0211 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1398 42.3890 23.9093 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.2350 REMARK 3 T33: 0.1624 T12: 0.0120 REMARK 3 T13: 0.0098 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5449 L22: 1.1305 REMARK 3 L33: 1.3433 L12: 0.4024 REMARK 3 L13: 0.1372 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.0787 S13: 0.0497 REMARK 3 S21: -0.0599 S22: -0.0320 S23: -0.0237 REMARK 3 S31: 0.0865 S32: 0.0273 S33: -0.0108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7304 43.5843 37.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.2721 REMARK 3 T33: 0.1710 T12: -0.0337 REMARK 3 T13: 0.0348 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.3443 L22: 3.7232 REMARK 3 L33: 1.4234 L12: -1.9339 REMARK 3 L13: 0.7481 L23: -0.5022 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.3768 S13: 0.0655 REMARK 3 S21: 0.1814 S22: 0.0002 S23: 0.2328 REMARK 3 S31: -0.0541 S32: -0.1400 S33: -0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2120 40.8112 45.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.3109 REMARK 3 T33: 0.1499 T12: -0.0768 REMARK 3 T13: 0.0425 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 6.5449 L22: 6.7535 REMARK 3 L33: 4.0865 L12: -5.5307 REMARK 3 L13: -1.3192 L23: 1.7377 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.6621 S13: 0.1538 REMARK 3 S21: 0.4459 S22: 0.1703 S23: -0.0086 REMARK 3 S31: 0.0083 S32: 0.0282 S33: 0.0027 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1042 35.3664 39.1803 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.4050 REMARK 3 T33: 0.2444 T12: -0.0649 REMARK 3 T13: 0.0385 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.0920 L22: 3.9647 REMARK 3 L33: 6.6955 L12: -2.0667 REMARK 3 L13: 1.5764 L23: 2.8368 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: -0.3874 S13: -0.2919 REMARK 3 S21: 0.1525 S22: 0.0124 S23: 0.4650 REMARK 3 S31: 0.3653 S32: -0.8244 S33: -0.0605 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9555 29.2275 47.3919 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.4011 REMARK 3 T33: 0.2216 T12: -0.0375 REMARK 3 T13: 0.0147 T23: 0.0484 REMARK 3 L TENSOR REMARK 3 L11: 7.6000 L22: 7.6908 REMARK 3 L33: 1.1475 L12: -3.7424 REMARK 3 L13: 0.7339 L23: -2.8449 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: -0.4159 S13: -0.1724 REMARK 3 S21: 0.1017 S22: -0.1793 S23: -0.1140 REMARK 3 S31: 0.1607 S32: -0.0851 S33: 0.0241 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 36.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.81667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.63333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.81667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.63333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.81667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.63333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.81667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.80500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.46094 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 32.81667 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 52.80500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 91.46094 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 32.81667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 611 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 29 O HOH A 401 1.18 REMARK 500 NE2 HIS A 29 O HOH A 401 2.01 REMARK 500 O HOH A 608 O HOH A 627 2.08 REMARK 500 O HOH A 442 O HOH A 614 2.10 REMARK 500 O HOH A 536 O HOH A 644 2.13 REMARK 500 O HOH A 408 O HOH A 515 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 678 O HOH A 678 11556 1.50 REMARK 500 HZ1 LYS A 247 O4 SO4 A 305 11556 1.59 REMARK 500 O HOH A 629 O HOH A 653 11556 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 155.36 70.64 REMARK 500 ALA A 85 52.65 -97.12 REMARK 500 ASP A 171 -166.77 -113.63 REMARK 500 TYR A 199 74.19 -150.26 REMARK 500 CYS A 218 76.90 -156.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 699 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 700 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 98.0 REMARK 620 3 HIS A 160 NE2 100.0 105.8 REMARK 620 4 HOH A 424 O 110.7 115.6 122.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 91.9 REMARK 620 3 HIS A 225 NE2 94.3 93.0 REMARK 620 4 JO9 A 303 N 92.6 171.1 94.4 REMARK 620 5 JO9 A 303 N 91.8 172.5 93.3 1.4 REMARK 620 6 JO9 A 303 O1 161.9 106.2 84.1 69.6 70.3 REMARK 620 7 JO9 A 303 O1 163.8 104.2 83.2 71.7 72.5 2.3 REMARK 620 8 HOH A 424 O 96.3 102.1 161.2 69.7 70.9 80.9 82.3 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7ZO5 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7ZO5 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7ZO5 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET JO9 A 303 96 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM ZN ZINC ION HETNAM JO9 (2~{R},4~{S})-2-[(1~{R})-2-(AZEPAN-1-YL)-1-FORMAMIDO-2- HETNAM 2 JO9 OXIDANYLIDENE-ETHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4- HETNAM 3 JO9 CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETSYN JO9 MECILLINAM DEGRADATION PRODUCT FORMUL 2 ZN 2(ZN 2+) FORMUL 4 JO9 C15 H25 N3 O4 S FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *302(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 ALA A 215 1 15 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ASP A 232 ALA A 239 5 8 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O GLN A 32 N LEU A 24 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O VAL A 50 N VAL A 43 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O LEU A 81 N LEU A 51 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O PHE A 152 N ILE A 145 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O TYR A 182 N TRP A 167 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O LEU A 222 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.12 LINK NE2 HIS A 84 ZN ZN A 302 1555 1555 2.05 LINK ND1 HIS A 86 ZN ZN A 302 1555 1555 2.05 LINK OD2 ASP A 88 ZN ZN A 301 1555 1555 2.10 LINK NE2 HIS A 89 ZN ZN A 301 1555 1555 2.10 LINK NE2 HIS A 160 ZN ZN A 302 1555 1555 2.03 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.05 LINK ZN ZN A 301 N AJO9 A 303 1555 1555 2.51 LINK ZN ZN A 301 N BJO9 A 303 1555 1555 2.44 LINK ZN ZN A 301 O1 AJO9 A 303 1555 1555 2.32 LINK ZN ZN A 301 O1 BJO9 A 303 1555 1555 2.30 LINK ZN ZN A 301 O HOH A 424 1555 1555 2.10 LINK ZN ZN A 302 O HOH A 424 1555 1555 1.85 CRYST1 105.610 105.610 98.450 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009469 0.005467 0.000000 0.00000 SCALE2 0.000000 0.010934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010157 0.00000