HEADER ANTIMICROBIAL PROTEIN 24-APR-22 7ZO6 TITLE L1 METALLO-BETA-LACTAMASE IN COMPLEX WITH HYDROLYSED CEFOXITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ANTIBIOTIC, LIGAND, ZINC, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 07-FEB-24 7ZO6 1 REMARK REVDAT 2 20-SEP-23 7ZO6 1 JRNL REVDAT 1 08-MAR-23 7ZO6 0 JRNL AUTH P.HINCHLIFFE,K.CALVOPINA,P.RABE,M.F.MOJICA,C.J.SCHOFIELD, JRNL AUTH 2 G.I.DMITRIENKO,R.A.BONOMO,A.J.VILA,J.SPENCER JRNL TITL INTERACTIONS OF HYDROLYZED BETA-LACTAMS WITH THE L1 JRNL TITL 2 METALLO-BETA-LACTAMASE: CRYSTALLOGRAPHY SUPPORTS JRNL TITL 3 STEREOSELECTIVE BINDING OF CEPHEM/CARBAPENEM PRODUCTS. JRNL REF J.BIOL.CHEM. V. 299 04606 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924941 JRNL DOI 10.1016/J.JBC.2023.104606 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6200 - 3.9700 1.00 2885 165 0.1588 0.1703 REMARK 3 2 3.9700 - 3.1500 1.00 2734 143 0.1439 0.1693 REMARK 3 3 3.1500 - 2.7500 1.00 2695 145 0.1569 0.1679 REMARK 3 4 2.7500 - 2.5000 1.00 2652 145 0.1488 0.1850 REMARK 3 5 2.5000 - 2.3200 1.00 2643 159 0.1505 0.2090 REMARK 3 6 2.3200 - 2.1900 1.00 2654 133 0.1533 0.1906 REMARK 3 7 2.1900 - 2.0800 1.00 2639 135 0.1535 0.1839 REMARK 3 8 2.0800 - 1.9900 1.00 2615 151 0.1663 0.1982 REMARK 3 9 1.9900 - 1.9100 1.00 2645 132 0.1864 0.2422 REMARK 3 10 1.9100 - 1.8400 1.00 2611 129 0.2195 0.2718 REMARK 3 11 1.8400 - 1.7900 1.00 2629 125 0.2325 0.3001 REMARK 3 12 1.7900 - 1.7300 1.00 2636 120 0.2580 0.2892 REMARK 3 13 1.7300 - 1.6900 1.00 2601 143 0.2997 0.2973 REMARK 3 14 1.6900 - 1.6500 1.00 2574 160 0.3399 0.3696 REMARK 3 15 1.6500 - 1.6100 1.00 2607 135 0.3795 0.3563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4285 15.3133 9.5995 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.3291 REMARK 3 T33: 0.3176 T12: 0.0697 REMARK 3 T13: 0.0382 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.5615 L22: 2.5934 REMARK 3 L33: 1.8518 L12: -0.3242 REMARK 3 L13: 0.1999 L23: 1.7129 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0218 S13: 0.1720 REMARK 3 S21: -0.0081 S22: -0.0681 S23: 0.0664 REMARK 3 S31: -0.1445 S32: -0.3302 S33: 0.0494 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1912 21.2292 2.9704 REMARK 3 T TENSOR REMARK 3 T11: 0.4181 T22: 0.3353 REMARK 3 T33: 0.3445 T12: 0.1174 REMARK 3 T13: 0.0506 T23: 0.0672 REMARK 3 L TENSOR REMARK 3 L11: 7.4497 L22: 7.4070 REMARK 3 L33: 5.0367 L12: 4.7017 REMARK 3 L13: 2.0324 L23: 4.8510 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: 0.2392 S13: 0.4802 REMARK 3 S21: -0.2407 S22: -0.1315 S23: 0.2636 REMARK 3 S31: -0.6006 S32: -0.2981 S33: -0.0464 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0383 15.5610 7.0729 REMARK 3 T TENSOR REMARK 3 T11: 0.2811 T22: 0.2273 REMARK 3 T33: 0.2661 T12: 0.0606 REMARK 3 T13: 0.0680 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.9809 L22: 8.7044 REMARK 3 L33: 6.5396 L12: 0.0939 REMARK 3 L13: 0.6228 L23: -3.2856 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.0231 S13: 0.1177 REMARK 3 S21: -0.1927 S22: -0.1009 S23: -0.5818 REMARK 3 S31: -0.3215 S32: 0.1600 S33: 0.0555 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8294 7.9618 9.4467 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2534 REMARK 3 T33: 0.2915 T12: 0.0203 REMARK 3 T13: 0.0197 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.9830 L22: 1.1802 REMARK 3 L33: 1.5377 L12: -0.3384 REMARK 3 L13: 0.0483 L23: 0.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: 0.0265 S13: 0.1248 REMARK 3 S21: -0.0454 S22: -0.0349 S23: -0.0087 REMARK 3 S31: 0.0506 S32: -0.0382 S33: -0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9160 8.7273 21.8383 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.2780 REMARK 3 T33: 0.2282 T12: 0.0487 REMARK 3 T13: 0.0218 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 1.9050 L22: 8.7246 REMARK 3 L33: 1.4278 L12: 1.3009 REMARK 3 L13: -0.1612 L23: 0.1634 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.2143 S13: 0.1209 REMARK 3 S21: 0.3246 S22: -0.0018 S23: -0.0892 REMARK 3 S31: -0.1370 S32: -0.1273 S33: -0.0249 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2518 2.5086 29.2748 REMARK 3 T TENSOR REMARK 3 T11: 0.3810 T22: 0.3830 REMARK 3 T33: 0.2532 T12: 0.0603 REMARK 3 T13: 0.0381 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 9.4265 L22: 6.1765 REMARK 3 L33: 6.3851 L12: 7.5812 REMARK 3 L13: 6.6178 L23: 5.9657 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: -0.5722 S13: -0.0260 REMARK 3 S21: 0.4803 S22: -0.2359 S23: 0.2939 REMARK 3 S31: 0.0764 S32: -0.2675 S33: 0.0665 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6195 19.2376 23.5927 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.3629 REMARK 3 T33: 0.3247 T12: 0.0939 REMARK 3 T13: 0.0644 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 2.6371 L22: 2.9770 REMARK 3 L33: 8.7634 L12: 1.4443 REMARK 3 L13: 4.2589 L23: 0.6933 REMARK 3 S TENSOR REMARK 3 S11: -0.0385 S12: -0.2035 S13: 0.1539 REMARK 3 S21: 0.2574 S22: 0.1907 S23: -0.0189 REMARK 3 S31: -0.2792 S32: -0.5873 S33: -0.1956 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2718 0.8390 30.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.3591 T22: 0.3989 REMARK 3 T33: 0.2845 T12: 0.0411 REMARK 3 T13: 0.0324 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 6.8875 L22: 3.7615 REMARK 3 L33: 3.2989 L12: 4.6643 REMARK 3 L13: -3.3891 L23: -3.4382 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.2727 S13: -0.1313 REMARK 3 S21: 0.3877 S22: -0.0202 S23: 0.0795 REMARK 3 S31: -0.0228 S32: -0.2300 S33: 0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 66.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.63033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.26067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.63033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.26067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.63033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.26067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.63033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.26067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.34500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 105.34500 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 411 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 578 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 N CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 173 O HOH A 402 1.59 REMARK 500 O HOH A 560 O HOH A 565 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH A 572 8555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 157.55 69.74 REMARK 500 ALA A 85 52.46 -95.70 REMARK 500 ASP A 171 -169.87 -105.83 REMARK 500 ASN A 174 -129.30 51.78 REMARK 500 TYR A 199 73.99 -152.01 REMARK 500 CYS A 218 69.39 -152.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 98.2 REMARK 620 3 HIS A 160 NE2 98.8 105.6 REMARK 620 4 JNX A 304 O20 169.3 92.5 78.1 REMARK 620 5 JNX A 304 O20 165.2 96.4 80.0 4.9 REMARK 620 6 HOH A 401 O 105.2 112.9 130.4 70.3 66.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 90.8 REMARK 620 3 HIS A 225 NE2 90.4 93.8 REMARK 620 4 JNX A 304 N05 92.6 173.9 81.2 REMARK 620 5 JNX A 304 N05 92.2 172.2 79.0 2.3 REMARK 620 6 JNX A 304 O03 171.9 97.2 88.5 79.3 79.8 REMARK 620 7 JNX A 304 O03 173.0 96.2 89.3 80.4 80.9 1.3 REMARK 620 8 HOH A 401 O 87.5 100.8 165.3 84.4 86.6 91.4 90.9 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7ZO6 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7ZO6 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7ZO6 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET JNX A 304 92 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM JNX (2~{R},5~{S})-5-(AMINOCARBONYLOXYMETHYL)-2-[(1~{S})-1- HETNAM 2 JNX METHOXY-2-OXIDANYL-2-OXIDANYLIDENE-1-(2-THIOPHEN-2- HETNAM 3 JNX YLETHANOYLAMINO)ETHYL]-5,6-DIHYDRO-2~{H}-1,3-THIAZINE- HETNAM 4 JNX 4-CARBOXYLIC ACID HETSYN JNX HYDROLYSED CEFOXITIN FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 JNX C16 H19 N3 O8 S2 FORMUL 6 HOH *178(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 LEU A 216 1 16 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ASP A 232 ALA A 239 5 8 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O GLN A 32 N LEU A 24 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O LEU A 52 N LEU A 41 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O LEU A 81 N LEU A 51 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O PHE A 152 N ILE A 145 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O TYR A 182 N TRP A 167 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O VAL A 220 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.02 LINK NE2 HIS A 84 ZN ZN A 302 1555 1555 2.15 LINK ND1 HIS A 86 ZN ZN A 302 1555 1555 2.17 LINK OD2 ASP A 88 ZN ZN A 301 1555 1555 2.12 LINK NE2 HIS A 89 ZN ZN A 301 1555 1555 2.16 LINK NE2 HIS A 160 ZN ZN A 302 1555 1555 2.15 LINK NE2 HIS A 225 ZN ZN A 301 1555 1555 2.20 LINK ZN ZN A 301 N05AJNX A 304 1555 1555 2.25 LINK ZN ZN A 301 N05BJNX A 304 1555 1555 2.20 LINK ZN ZN A 301 O03AJNX A 304 1555 1555 2.25 LINK ZN ZN A 301 O03BJNX A 304 1555 1555 2.43 LINK ZN ZN A 301 O HOH A 401 1555 1555 2.13 LINK ZN ZN A 302 O20AJNX A 304 1555 1555 2.38 LINK ZN ZN A 302 O20BJNX A 304 1555 1555 2.30 LINK ZN ZN A 302 O HOH A 401 1555 1555 1.92 CRYST1 105.345 105.345 97.891 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009493 0.005481 0.000000 0.00000 SCALE2 0.000000 0.010961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010215 0.00000