HEADER ANTIMICROBIAL PROTEIN 24-APR-22 7ZO7 TITLE L1 METALLO-BETA-LACTAMASE IN COMPLEX WITH HYDROLYSED CEFMETAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_TAXID: 40324; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS ANTIBIOTIC, LIGAND, ZINC, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 07-FEB-24 7ZO7 1 REMARK REVDAT 2 20-SEP-23 7ZO7 1 JRNL REVDAT 1 08-MAR-23 7ZO7 0 JRNL AUTH P.HINCHLIFFE,K.CALVOPINA,P.RABE,M.F.MOJICA,C.J.SCHOFIELD, JRNL AUTH 2 G.I.DMITRIENKO,R.A.BONOMO,A.J.VILA,J.SPENCER JRNL TITL INTERACTIONS OF HYDROLYZED BETA-LACTAMS WITH THE L1 JRNL TITL 2 METALLO-BETA-LACTAMASE: CRYSTALLOGRAPHY SUPPORTS JRNL TITL 3 STEREOSELECTIVE BINDING OF CEPHEM/CARBAPENEM PRODUCTS. JRNL REF J.BIOL.CHEM. V. 299 04606 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924941 JRNL DOI 10.1016/J.JBC.2023.104606 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.8600 - 4.0200 1.00 2807 160 0.1579 0.1619 REMARK 3 2 4.0200 - 3.1900 1.00 2642 144 0.1379 0.1486 REMARK 3 3 3.1900 - 2.7900 1.00 2615 138 0.1561 0.1766 REMARK 3 4 2.7900 - 2.5300 1.00 2580 139 0.1454 0.1530 REMARK 3 5 2.5300 - 2.3500 1.00 2570 154 0.1457 0.1798 REMARK 3 6 2.3500 - 2.2100 1.00 2577 138 0.1539 0.1917 REMARK 3 7 2.2100 - 2.1000 1.00 2552 127 0.1600 0.1763 REMARK 3 8 2.1000 - 2.0100 1.00 2546 145 0.1535 0.1589 REMARK 3 9 2.0100 - 1.9300 1.00 2557 136 0.1528 0.1700 REMARK 3 10 1.9300 - 1.8600 1.00 2558 112 0.1709 0.2097 REMARK 3 11 1.8600 - 1.8100 1.00 2551 129 0.2127 0.2336 REMARK 3 12 1.8100 - 1.7500 1.00 2525 117 0.2546 0.3213 REMARK 3 13 1.7500 - 1.7100 1.00 2539 132 0.2180 0.2692 REMARK 3 14 1.7100 - 1.6700 1.00 2502 154 0.2252 0.2769 REMARK 3 15 1.6700 - 1.6300 0.98 2502 125 0.2495 0.2666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.093 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2133 REMARK 3 ANGLE : 1.009 2921 REMARK 3 CHIRALITY : 0.058 322 REMARK 3 PLANARITY : 0.008 386 REMARK 3 DIHEDRAL : 13.359 760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3866 21.1309 -8.2975 REMARK 3 T TENSOR REMARK 3 T11: 0.3208 T22: 0.2190 REMARK 3 T33: 0.2315 T12: -0.0434 REMARK 3 T13: -0.0803 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.5332 L22: 0.7810 REMARK 3 L33: 1.9036 L12: 0.5052 REMARK 3 L13: -1.4115 L23: -0.5191 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: -0.0543 S13: 0.0045 REMARK 3 S21: -0.1499 S22: 0.1154 S23: 0.0927 REMARK 3 S31: 0.3512 S32: 0.0167 S33: -0.0614 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6064 28.6998 -9.2824 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.1773 REMARK 3 T33: 0.1985 T12: -0.0535 REMARK 3 T13: -0.0658 T23: 0.0862 REMARK 3 L TENSOR REMARK 3 L11: 4.3882 L22: 3.2147 REMARK 3 L33: 2.8378 L12: 2.6363 REMARK 3 L13: 0.4737 L23: 1.3278 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: 0.1606 S13: 0.3444 REMARK 3 S21: -0.2470 S22: 0.1500 S23: 0.4336 REMARK 3 S31: 0.1370 S32: -0.3235 S33: -0.0744 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2432 36.6066 -9.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.2191 T22: 0.1931 REMARK 3 T33: 0.2135 T12: -0.0290 REMARK 3 T13: -0.0228 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.0193 L22: 1.2611 REMARK 3 L33: 1.9537 L12: -0.0625 REMARK 3 L13: -0.3637 L23: 0.2897 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.0642 S13: 0.0745 REMARK 3 S21: -0.1081 S22: 0.0608 S23: 0.0492 REMARK 3 S31: 0.0607 S32: 0.0872 S33: -0.1311 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2855 32.7703 4.6973 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1299 REMARK 3 T33: 0.1531 T12: -0.0106 REMARK 3 T13: -0.0014 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 6.6181 L22: 2.3023 REMARK 3 L33: 1.1951 L12: 1.8279 REMARK 3 L13: 0.7545 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: 0.1062 S12: -0.1566 S13: 0.0374 REMARK 3 S21: 0.1123 S22: 0.0025 S23: 0.2203 REMARK 3 S31: 0.0450 S32: -0.0491 S33: -0.0857 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3381 32.6842 12.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.2157 T22: 0.1529 REMARK 3 T33: 0.1858 T12: 0.0045 REMARK 3 T13: -0.0090 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 6.3280 L22: 2.6886 REMARK 3 L33: 3.6533 L12: 2.3714 REMARK 3 L13: -2.4392 L23: -1.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.2568 S12: -0.4463 S13: 0.3542 REMARK 3 S21: 0.1888 S22: -0.1321 S23: 0.2599 REMARK 3 S31: -0.1091 S32: 0.1162 S33: -0.1337 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6897 15.8089 6.3464 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.1790 REMARK 3 T33: 0.1844 T12: -0.0019 REMARK 3 T13: -0.0458 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 3.6630 L22: 1.4737 REMARK 3 L33: 6.9094 L12: -0.1436 REMARK 3 L13: -0.3170 L23: 2.9278 REMARK 3 S TENSOR REMARK 3 S11: 0.1143 S12: -0.0879 S13: -0.1992 REMARK 3 S21: 0.1615 S22: -0.0131 S23: -0.0212 REMARK 3 S31: 0.8214 S32: 0.0350 S33: -0.0941 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3473 28.3599 14.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.2490 T22: 0.3286 REMARK 3 T33: 0.1394 T12: 0.0047 REMARK 3 T13: -0.0367 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 5.1889 L22: 7.4168 REMARK 3 L33: 0.9492 L12: 6.1908 REMARK 3 L13: 0.3852 L23: 0.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.1991 S12: -0.6124 S13: -0.1932 REMARK 3 S21: 0.3709 S22: -0.2181 S23: -0.3031 REMARK 3 S31: 0.1158 S32: 0.2690 S33: 0.0522 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97633 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40756 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.629 REMARK 200 RESOLUTION RANGE LOW (A) : 91.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 1 UL PROTEIN (15 MG/ML) MIXED WITH 1 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.71167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.42333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.71167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.42333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.71167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.42333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.71167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.42333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 -52.65000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 91.19200 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -32.71167 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -32.71167 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 622 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 175 O HOH A 401 1.20 REMARK 500 HH22 ARG A 173 O HOH A 402 1.36 REMARK 500 O HOH A 443 O HOH A 596 1.89 REMARK 500 N GLY A 175 O HOH A 401 1.95 REMARK 500 O HOH A 509 O HOH A 565 1.98 REMARK 500 O HOH A 585 O HOH A 600 1.99 REMARK 500 O HOH A 587 O HOH A 605 1.99 REMARK 500 NH2 ARG A 173 O HOH A 402 2.13 REMARK 500 O HOH A 595 O HOH A 599 2.14 REMARK 500 O HOH A 606 O HOH A 618 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 476 O HOH A 476 9554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 156.24 69.32 REMARK 500 ALA A 85 51.74 -94.31 REMARK 500 ASP A 171 -169.14 -110.48 REMARK 500 TYR A 199 73.74 -151.90 REMARK 500 CYS A 218 69.56 -154.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 99.2 REMARK 620 3 HIS A 160 NE2 98.1 107.4 REMARK 620 4 JOU A 304 O19 170.0 90.6 80.6 REMARK 620 5 HOH A 411 O 103.1 112.4 130.7 71.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 89.8 REMARK 620 3 HIS A 225 NE2 89.5 94.3 REMARK 620 4 JOU A 304 N05 91.1 177.5 88.0 REMARK 620 5 JOU A 304 O03 165.8 104.2 91.3 74.8 REMARK 620 6 HOH A 411 O 88.4 99.3 166.3 78.5 87.4 REMARK 620 N 1 2 3 4 5 DBREF 7ZO7 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7ZO7 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7ZO7 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET JOU A 304 48 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM JOU (2R,5R)-2-[(1S)-1-[2-(CYANOMETHYLSULFANYL) HETNAM 2 JOU ETHANOYLAMINO]-1-METHOXY-2-OXIDANYL-2-OXIDANYLIDENE- HETNAM 3 JOU ETHYL]-5-[(1-METHYL-1,2,3,4-TETRAZOL-5-YL) HETNAM 4 JOU SULFANYLMETHYL]-5,6-DIHYDRO-2H-1,3-THIAZINE-4- HETNAM 5 JOU CARBOXYLIC ACID HETSYN JOU HYDROLYSED CEFMETAZOLE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 JOU C15 H19 N7 O6 S3 FORMUL 6 HOH *228(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 ALA A 215 1 15 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ASP A 232 ALA A 239 5 8 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O GLN A 32 N LEU A 24 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O VAL A 50 N VAL A 43 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O LEU A 81 N LEU A 51 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O PHE A 152 N ILE A 145 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O ILE A 180 N TRP A 169 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O VAL A 220 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.08 LINK NE2 HIS A 84 ZN ZN A 301 1555 1555 2.07 LINK ND1 HIS A 86 ZN ZN A 301 1555 1555 2.08 LINK OD2 ASP A 88 ZN ZN A 302 1555 1555 2.16 LINK NE2 HIS A 89 ZN ZN A 302 1555 1555 2.10 LINK NE2 HIS A 160 ZN ZN A 301 1555 1555 2.04 LINK NE2 HIS A 225 ZN ZN A 302 1555 1555 2.07 LINK ZN ZN A 301 O19 JOU A 304 1555 1555 2.55 LINK ZN ZN A 301 O HOH A 411 1555 1555 1.93 LINK ZN ZN A 302 N05 JOU A 304 1555 1555 2.37 LINK ZN ZN A 302 O03 JOU A 304 1555 1555 2.23 LINK ZN ZN A 302 O HOH A 411 1555 1555 2.16 CRYST1 105.469 105.469 98.135 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009481 0.005474 0.000000 0.00000 SCALE2 0.000000 0.010948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010190 0.00000