HEADER GENE REGULATION 28-APR-22 7ZPN TITLE CRYSTAL STRUCTURE OF ISCR FROM DINOROSEOBACTER SHIBAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HTH-TYPE TRANSCRIPTIONAL REGULATOR ISCR FROM COMPND 6 DINOROSEOBACTER SHIBAE CONTAINING N-TERMINAL STREP-TAG II AND COMPND 7 PRESCISSION PROTEASE CLEAVAGE SITE (NOT CLEAVED) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DINOROSEOBACTER SHIBAE DFL 12 = DSM 16493; SOURCE 3 ORGANISM_TAXID: 398580; SOURCE 4 STRAIN: DSM 16493 / NCIMB 14021 / DFL 12; SOURCE 5 GENE: ISCR, DSHI_1633; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21CD+(DE3)RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52BSTREPII KEYWDS TRANSCRIPTION REGULATOR, IRON DEPENDENT REGULATOR, DNA BINDING, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR P.LUKAT,L.PLOETZKY,W.BLANKENFELDT,D.JAHN,E.HAERTIG REVDAT 2 07-FEB-24 7ZPN 1 REMARK REVDAT 1 26-APR-23 7ZPN 0 JRNL AUTH L.PLOETZKY,H.MAASS,M.BEHRINGER,P.LUKAT,W.BLANKENFELDT, JRNL AUTH 2 D.JAHN,E.HAERTIG JRNL TITL DINOROSEOBACTER SHIBAE ISCR HOMOLOG ACTS AS A REPRESSOR FOR JRNL TITL 2 IRON ACQUISITION GENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33410 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.8700 - 4.4300 1.00 2839 132 0.1900 0.2046 REMARK 3 2 4.4300 - 3.5200 1.00 2673 170 0.1618 0.1909 REMARK 3 3 3.5200 - 3.0700 1.00 2658 142 0.1978 0.2207 REMARK 3 4 3.0700 - 2.7900 1.00 2662 139 0.2122 0.2370 REMARK 3 5 2.7900 - 2.5900 1.00 2642 131 0.1988 0.2753 REMARK 3 6 2.5900 - 2.4400 1.00 2620 133 0.2343 0.2586 REMARK 3 7 2.4400 - 2.3200 1.00 2592 160 0.2003 0.2324 REMARK 3 8 2.3200 - 2.2200 1.00 2612 141 0.1969 0.2062 REMARK 3 9 2.2200 - 2.1300 1.00 2611 137 0.1873 0.2094 REMARK 3 10 2.1300 - 2.0600 1.00 2626 133 0.2123 0.2468 REMARK 3 11 2.0600 - 1.9900 1.00 2607 133 0.2674 0.2770 REMARK 3 12 1.9900 - 1.9400 1.00 2562 155 0.3117 0.3328 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -7 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6774 21.4503 59.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.9113 T22: 1.0436 REMARK 3 T33: 0.7406 T12: -0.0760 REMARK 3 T13: -0.0459 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 0.1978 L22: 0.2448 REMARK 3 L33: 0.0928 L12: 0.1496 REMARK 3 L13: 0.0690 L23: 0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: 0.5832 S13: -0.6173 REMARK 3 S21: 0.0086 S22: -0.2830 S23: -0.5213 REMARK 3 S31: 0.4633 S32: 1.0865 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8750 14.9616 57.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.4299 T22: 0.4138 REMARK 3 T33: 0.3750 T12: -0.1335 REMARK 3 T13: -0.0138 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.0441 L22: 1.4316 REMARK 3 L33: 1.9031 L12: 0.2377 REMARK 3 L13: -0.0529 L23: -0.1034 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: 1.2480 S13: 1.1047 REMARK 3 S21: -0.4276 S22: 0.2218 S23: 0.4511 REMARK 3 S31: -0.8164 S32: -0.4219 S33: 0.0278 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2435 4.8955 60.0473 REMARK 3 T TENSOR REMARK 3 T11: 0.9145 T22: 0.7367 REMARK 3 T33: 0.4408 T12: -0.2248 REMARK 3 T13: 0.1324 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 0.0949 L22: 0.0788 REMARK 3 L33: 0.0517 L12: -0.0855 REMARK 3 L13: 0.0702 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.3987 S13: 0.4817 REMARK 3 S21: 2.0614 S22: -0.2997 S23: 0.7293 REMARK 3 S31: 0.1706 S32: -1.1168 S33: -0.0108 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0898 11.9321 49.9229 REMARK 3 T TENSOR REMARK 3 T11: 0.4758 T22: 0.6350 REMARK 3 T33: 0.5673 T12: -0.1126 REMARK 3 T13: -0.0758 T23: 0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.3157 L22: 0.5330 REMARK 3 L33: 0.2674 L12: -0.3776 REMARK 3 L13: -0.0144 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.2970 S12: 0.2986 S13: 0.2158 REMARK 3 S21: -0.6020 S22: 0.1507 S23: 1.0541 REMARK 3 S31: -0.3927 S32: -0.8543 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3479 5.8193 52.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.4152 T22: 0.5194 REMARK 3 T33: 0.3974 T12: -0.1279 REMARK 3 T13: -0.0112 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.1393 L22: 0.4076 REMARK 3 L33: 0.5243 L12: -0.0420 REMARK 3 L13: 0.2239 L23: 0.2061 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.8086 S13: -0.0900 REMARK 3 S21: -0.5567 S22: -0.1342 S23: -0.3932 REMARK 3 S31: 0.0416 S32: 0.8788 S33: -0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1981 3.1757 62.5255 REMARK 3 T TENSOR REMARK 3 T11: 0.5459 T22: 0.3937 REMARK 3 T33: 0.2936 T12: -0.2125 REMARK 3 T13: -0.0097 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.9275 L22: 1.0493 REMARK 3 L33: 0.4365 L12: -0.7561 REMARK 3 L13: -0.3148 L23: 0.5731 REMARK 3 S TENSOR REMARK 3 S11: 0.2847 S12: -0.2530 S13: -0.3162 REMARK 3 S21: 0.5360 S22: -0.2863 S23: -0.2309 REMARK 3 S31: 0.6773 S32: -0.3074 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4587 14.1118 61.1991 REMARK 3 T TENSOR REMARK 3 T11: 0.3969 T22: 0.4087 REMARK 3 T33: 0.4050 T12: -0.1213 REMARK 3 T13: -0.0256 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 0.7009 L22: 1.1258 REMARK 3 L33: 0.8347 L12: 0.4133 REMARK 3 L13: -0.5024 L23: 0.3518 REMARK 3 S TENSOR REMARK 3 S11: 0.1429 S12: -0.2922 S13: 0.1187 REMARK 3 S21: 0.1848 S22: -0.2341 S23: 0.2289 REMARK 3 S31: 0.0455 S32: 0.2449 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2318 28.5840 64.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.4565 T22: 0.3797 REMARK 3 T33: 0.5402 T12: -0.0924 REMARK 3 T13: -0.0301 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.6731 L22: 0.8107 REMARK 3 L33: 0.4726 L12: 0.7745 REMARK 3 L13: 0.1330 L23: 0.1394 REMARK 3 S TENSOR REMARK 3 S11: -0.1381 S12: 0.0482 S13: 0.6993 REMARK 3 S21: -0.2984 S22: -0.0128 S23: 0.8118 REMARK 3 S31: -0.3026 S32: -0.1088 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1925 37.5015 74.3276 REMARK 3 T TENSOR REMARK 3 T11: 0.6529 T22: 0.5862 REMARK 3 T33: 0.4234 T12: -0.2020 REMARK 3 T13: -0.0532 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 2.2698 L22: 1.6833 REMARK 3 L33: 0.5073 L12: 0.7758 REMARK 3 L13: -1.0720 L23: -0.3796 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: -1.1666 S13: -0.8586 REMARK 3 S21: 1.2373 S22: -0.1941 S23: -0.3376 REMARK 3 S31: -0.0537 S32: 0.5651 S33: -0.0200 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -7 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9180 30.4411 58.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.9888 T22: 0.8950 REMARK 3 T33: 0.8274 T12: -0.0374 REMARK 3 T13: -0.0226 T23: -0.1041 REMARK 3 L TENSOR REMARK 3 L11: 0.3403 L22: 0.3402 REMARK 3 L33: 0.1392 L12: 0.3306 REMARK 3 L13: 0.0599 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: 1.2310 S13: 0.0209 REMARK 3 S21: -0.5378 S22: -0.1731 S23: -0.0142 REMARK 3 S31: -0.0282 S32: -0.1307 S33: 0.0004 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9686 36.8823 62.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.4273 REMARK 3 T33: 0.4936 T12: -0.0954 REMARK 3 T13: 0.0215 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.8568 L22: 1.1470 REMARK 3 L33: 0.9411 L12: -0.4632 REMARK 3 L13: -0.3220 L23: 0.1290 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.5952 S13: -0.8661 REMARK 3 S21: -0.0629 S22: 0.2858 S23: -0.7882 REMARK 3 S31: 0.6272 S32: 1.1053 S33: 0.0177 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4426 42.7245 62.4136 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.6382 REMARK 3 T33: 0.6688 T12: -0.1419 REMARK 3 T13: 0.0463 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.6697 L22: 1.4458 REMARK 3 L33: 0.9057 L12: 0.1927 REMARK 3 L13: -0.2651 L23: -0.9807 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.2328 S13: -0.2408 REMARK 3 S21: 0.6669 S22: 0.0181 S23: -1.0074 REMARK 3 S31: -0.0689 S32: 0.8786 S33: 0.0020 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 39 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2503 45.9099 59.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.4761 T22: 0.3944 REMARK 3 T33: 0.3640 T12: -0.1656 REMARK 3 T13: 0.0015 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.3815 L22: 2.9570 REMARK 3 L33: 3.2454 L12: 1.3368 REMARK 3 L13: 0.2969 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.2251 S13: 0.0672 REMARK 3 S21: -0.4003 S22: 0.0496 S23: 0.0576 REMARK 3 S31: -0.3874 S32: 0.2017 S33: -0.0081 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2744 26.3747 69.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: 0.4088 REMARK 3 T33: 0.4654 T12: -0.1548 REMARK 3 T13: -0.0646 T23: 0.1020 REMARK 3 L TENSOR REMARK 3 L11: 0.2812 L22: 1.6768 REMARK 3 L33: 1.3909 L12: -0.0020 REMARK 3 L13: -0.4999 L23: 0.2940 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: -0.0621 S13: -0.6273 REMARK 3 S21: 0.0988 S22: -0.2299 S23: -0.8107 REMARK 3 S31: 0.1556 S32: 0.2752 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7477 19.3569 68.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.5592 T22: 0.4462 REMARK 3 T33: 0.4677 T12: -0.0683 REMARK 3 T13: 0.0019 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.4293 L22: 0.2537 REMARK 3 L33: 0.4218 L12: 0.2411 REMARK 3 L13: 0.0999 L23: 0.2081 REMARK 3 S TENSOR REMARK 3 S11: -0.3564 S12: -0.3266 S13: 0.2760 REMARK 3 S21: 0.4657 S22: 0.0482 S23: 0.7876 REMARK 3 S31: -0.5901 S32: -0.4090 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-22. REMARK 100 THE DEPOSITION ID IS D_1292122646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 56.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.00 REMARK 200 R MERGE FOR SHELL (I) : 1.05300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4CIC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % (V/V) PEG 200 100 MM CAPS/ NAOH REMARK 280 PH 10,5 200 MM AMMONIUM SULFATE, PH 10.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.93867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.96933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.96933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.93867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 SER A -19 REMARK 465 TRP A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 PRO A -15 REMARK 465 GLN A -14 REMARK 465 PHE A -13 REMARK 465 GLU A -12 REMARK 465 LYS A -11 REMARK 465 GLY A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 GLU A 85 REMARK 465 THR A 86 REMARK 465 VAL A 87 REMARK 465 SER A 88 REMARK 465 ALA A 89 REMARK 465 MET A 90 REMARK 465 HIS A 91 REMARK 465 THR A 92 REMARK 465 GLY A 93 REMARK 465 ALA A 94 REMARK 465 GLY A 95 REMARK 465 ALA A 96 REMARK 465 SER A 97 REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 LYS A 100 REMARK 465 SER A 101 REMARK 465 THR A 138 REMARK 465 PRO A 139 REMARK 465 CYS A 140 REMARK 465 PRO A 141 REMARK 465 ALA A 142 REMARK 465 VAL A 143 REMARK 465 PRO A 144 REMARK 465 THR A 145 REMARK 465 LEU A 146 REMARK 465 PHE A 147 REMARK 465 THR A 148 REMARK 465 VAL A 149 REMARK 465 VAL A 150 REMARK 465 ASP A 151 REMARK 465 ASP A 152 REMARK 465 VAL A 153 REMARK 465 VAL A 154 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 ALA A 157 REMARK 465 ASP A 158 REMARK 465 ALA A 159 REMARK 465 VAL A 160 REMARK 465 ALA A 161 REMARK 465 ASN A 162 REMARK 465 MET B -21 REMARK 465 ALA B -20 REMARK 465 SER B -19 REMARK 465 TRP B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 PRO B -15 REMARK 465 GLN B -14 REMARK 465 PHE B -13 REMARK 465 GLU B -12 REMARK 465 LYS B -11 REMARK 465 GLY B -10 REMARK 465 ALA B -9 REMARK 465 LEU B -8 REMARK 465 GLU B 85 REMARK 465 THR B 86 REMARK 465 VAL B 87 REMARK 465 SER B 88 REMARK 465 ALA B 89 REMARK 465 MET B 90 REMARK 465 HIS B 91 REMARK 465 THR B 92 REMARK 465 GLY B 93 REMARK 465 ALA B 94 REMARK 465 GLY B 95 REMARK 465 ALA B 96 REMARK 465 SER B 97 REMARK 465 GLY B 98 REMARK 465 ALA B 99 REMARK 465 LYS B 100 REMARK 465 SER B 101 REMARK 465 THR B 138 REMARK 465 PRO B 139 REMARK 465 CYS B 140 REMARK 465 PRO B 141 REMARK 465 ALA B 142 REMARK 465 VAL B 143 REMARK 465 PRO B 144 REMARK 465 THR B 145 REMARK 465 LEU B 146 REMARK 465 PHE B 147 REMARK 465 THR B 148 REMARK 465 VAL B 149 REMARK 465 VAL B 150 REMARK 465 ASP B 151 REMARK 465 ASP B 152 REMARK 465 VAL B 153 REMARK 465 VAL B 154 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 ALA B 157 REMARK 465 ASP B 158 REMARK 465 ALA B 159 REMARK 465 VAL B 160 REMARK 465 ALA B 161 REMARK 465 ASN B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 GLU B -7 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 334 O HOH B 342 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 23 -2.62 89.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZPN A 2 162 UNP A8LL11 A8LL11_DINSH 2 162 DBREF 7ZPN B 2 162 UNP A8LL11 A8LL11_DINSH 2 162 SEQADV 7ZPN MET A -21 UNP A8LL11 INITIATING METHIONINE SEQADV 7ZPN ALA A -20 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN SER A -19 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN TRP A -18 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN SER A -17 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN HIS A -16 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PRO A -15 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLN A -14 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PHE A -13 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLU A -12 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LYS A -11 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY A -10 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN ALA A -9 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LEU A -8 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLU A -7 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN VAL A -6 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LEU A -5 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PHE A -4 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLN A -3 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY A -2 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PRO A -1 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY A 0 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN VAL A 1 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN MET B -21 UNP A8LL11 INITIATING METHIONINE SEQADV 7ZPN ALA B -20 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN SER B -19 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN TRP B -18 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN SER B -17 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN HIS B -16 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PRO B -15 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLN B -14 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PHE B -13 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLU B -12 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LYS B -11 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY B -10 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN ALA B -9 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LEU B -8 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLU B -7 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN VAL B -6 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN LEU B -5 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PHE B -4 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLN B -3 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY B -2 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN PRO B -1 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN GLY B 0 UNP A8LL11 EXPRESSION TAG SEQADV 7ZPN VAL B 1 UNP A8LL11 EXPRESSION TAG SEQRES 1 A 184 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 184 LEU GLU VAL LEU PHE GLN GLY PRO GLY VAL LYS LEU SER SEQRES 3 A 184 THR LYS GLY ARG TYR ALA MET VAL ALA MET ALA ASP LEU SEQRES 4 A 184 ALA GLU ALA PRO ALA ASP LYS LEU VAL THR LEU SER GLU SEQRES 5 A 184 ILE ALA GLU ARG GLN SER ILE SER LEU THR TYR LEU GLU SEQRES 6 A 184 GLN LEU PHE VAL LYS LEU ARG ARG ALA LYS LEU VAL GLU SEQRES 7 A 184 SER VAL ARG GLY PRO GLY GLY GLY TYR ARG LEU ALA ARG SEQRES 8 A 184 ALA PRO ASP ALA ILE ARG VAL SER ASP VAL LEU GLN ALA SEQRES 9 A 184 VAL ASP GLU THR VAL SER ALA MET HIS THR GLY ALA GLY SEQRES 10 A 184 ALA SER GLY ALA LYS SER GLY SER ARG ALA GLN SER MET SEQRES 11 A 184 THR ASN ARG LEU TRP GLU GLY LEU SER ALA HIS VAL TYR SEQRES 12 A 184 VAL PHE LEU HIS GLN THR ARG LEU SER ASP VAL VAL THR SEQRES 13 A 184 ASN GLN LEU THR PRO CYS PRO ALA VAL PRO THR LEU PHE SEQRES 14 A 184 THR VAL VAL ASP ASP VAL VAL ASP ASP ALA ASP ALA VAL SEQRES 15 A 184 ALA ASN SEQRES 1 B 184 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 B 184 LEU GLU VAL LEU PHE GLN GLY PRO GLY VAL LYS LEU SER SEQRES 3 B 184 THR LYS GLY ARG TYR ALA MET VAL ALA MET ALA ASP LEU SEQRES 4 B 184 ALA GLU ALA PRO ALA ASP LYS LEU VAL THR LEU SER GLU SEQRES 5 B 184 ILE ALA GLU ARG GLN SER ILE SER LEU THR TYR LEU GLU SEQRES 6 B 184 GLN LEU PHE VAL LYS LEU ARG ARG ALA LYS LEU VAL GLU SEQRES 7 B 184 SER VAL ARG GLY PRO GLY GLY GLY TYR ARG LEU ALA ARG SEQRES 8 B 184 ALA PRO ASP ALA ILE ARG VAL SER ASP VAL LEU GLN ALA SEQRES 9 B 184 VAL ASP GLU THR VAL SER ALA MET HIS THR GLY ALA GLY SEQRES 10 B 184 ALA SER GLY ALA LYS SER GLY SER ARG ALA GLN SER MET SEQRES 11 B 184 THR ASN ARG LEU TRP GLU GLY LEU SER ALA HIS VAL TYR SEQRES 12 B 184 VAL PHE LEU HIS GLN THR ARG LEU SER ASP VAL VAL THR SEQRES 13 B 184 ASN GLN LEU THR PRO CYS PRO ALA VAL PRO THR LEU PHE SEQRES 14 B 184 THR VAL VAL ASP ASP VAL VAL ASP ASP ALA ASP ALA VAL SEQRES 15 B 184 ALA ASN HET SO4 A 201 5 HET SO4 A 202 5 HET GOL A 203 13 HET SO4 A 204 5 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 7(O4 S 2-) FORMUL 5 GOL C3 H8 O3 FORMUL 11 HOH *97(H2 O) HELIX 1 AA1 SER A 4 ALA A 20 1 17 HELIX 2 AA2 THR A 27 SER A 36 1 10 HELIX 3 AA3 SER A 38 ALA A 52 1 15 HELIX 4 AA4 ALA A 70 ILE A 74 5 5 HELIX 5 AA5 ARG A 75 ASP A 84 1 10 HELIX 6 AA6 SER A 103 THR A 127 1 25 HELIX 7 AA7 ARG A 128 THR A 134 1 7 HELIX 8 AA8 SER B 4 ALA B 20 1 17 HELIX 9 AA9 THR B 27 SER B 36 1 10 HELIX 10 AB1 SER B 38 ALA B 52 1 15 HELIX 11 AB2 ALA B 70 ILE B 74 5 5 HELIX 12 AB3 ARG B 75 ASP B 84 1 10 HELIX 13 AB4 SER B 103 THR B 127 1 25 HELIX 14 AB5 ARG B 128 THR B 134 1 7 SHEET 1 AA1 4 VAL A 1 LEU A 3 0 SHEET 2 AA1 4 LEU A -5 GLY A -2 -1 N PHE A -4 O LEU A 3 SHEET 3 AA1 4 LEU B -5 GLN B -3 -1 O GLN B -3 N LEU A -5 SHEET 4 AA1 4 LYS B 2 LEU B 3 -1 O LEU B 3 N PHE B -4 SHEET 1 AA2 2 VAL A 55 VAL A 58 0 SHEET 2 AA2 2 GLY A 64 LEU A 67 -1 O GLY A 64 N VAL A 58 SHEET 1 AA3 2 VAL B 55 VAL B 58 0 SHEET 2 AA3 2 GLY B 64 LEU B 67 -1 O GLY B 64 N VAL B 58 CRYST1 70.971 70.971 149.908 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014090 0.008135 0.000000 0.00000 SCALE2 0.000000 0.016270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006671 0.00000