HEADER METAL BINDING PROTEIN 04-MAY-22 7ZRP TITLE 2.65 ANGSTROM CRYSTAL STRUCTURE OF CA/CAM:CAMKIIDELTA PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-1; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II SUBUNIT COMPND 7 DELTA; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: CAM KINASE II SUBUNIT DELTA,CAMK-II SUBUNIT DELTA; COMPND 10 EC: 2.7.11.17; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CALCIUM-BINDING PROTEIN, CALMODULIN, CAM, CAMKII, KINASE, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.HELASSA,S.ANTONYUK REVDAT 3 31-JAN-24 7ZRP 1 REMARK REVDAT 2 11-JAN-23 7ZRP 1 JRNL REVDAT 1 28-DEC-22 7ZRP 0 JRNL AUTH O.PRAKASH,N.GUPTA,A.MILBURN,L.MCCORMICK,V.DEUGI,P.FISCH, JRNL AUTH 2 J.WYLES,N.L.THOMAS,S.ANTONYUK,C.DART,N.HELASSA JRNL TITL CALMODULIN VARIANT E140G ASSOCIATED WITH LONG QT SYNDROME JRNL TITL 2 IMPAIRS CAMKII DELTA AUTOPHOSPHORYLATION AND L-TYPE CALCIUM JRNL TITL 3 CHANNEL INACTIVATION. JRNL REF J.BIOL.CHEM. V. 299 02777 2022 JRNL REFN ESSN 1083-351X JRNL PMID 36496072 JRNL DOI 10.1016/J.JBC.2022.102777 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0350 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.004 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 742 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.17900 REMARK 3 B22 (A**2) : 2.63300 REMARK 3 B33 (A**2) : -1.45400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.373 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.356 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2760 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2424 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3595 ; 1.288 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5673 ; 0.461 ; 1.562 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 5.851 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;13.784 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 507 ;17.503 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3083 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 677 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 33 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1342 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.228 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.014 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.037 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1336 ; 5.191 ; 6.542 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1336 ; 5.186 ; 6.541 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1653 ; 7.674 ; 9.786 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1654 ; 7.673 ; 9.786 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 6.137 ; 7.178 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1425 ; 6.135 ; 7.177 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1942 ; 9.107 ;10.529 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1943 ; 9.104 ;10.528 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 145 NULL REMARK 3 1 A 3 A 145 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 2 A 1 A 22 NULL REMARK 3 2 A 2 A 23 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ZRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 53.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 1.92100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2WEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM ZINC ACETATE, 100 MM IMIDAZOLE REMARK 280 PH8.0, 18% PEG3000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.14150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.07800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.07800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.14150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 ALA C 1 REMARK 465 ASP C 2 REMARK 465 ALA C 147 REMARK 465 LYS C 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 107 O HOH A 302 1.15 REMARK 500 OD2 ASP A 78 O HOH A 301 1.96 REMARK 500 NE2 HIS A 107 O HOH A 302 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS C 107 ZN ZN A 208 4445 1.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 23.98 -79.83 REMARK 500 ASP A 80 35.72 -87.67 REMARK 500 ASP C 58 -50.03 -179.13 REMARK 500 ASP C 80 35.49 -86.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 86 0.12 SIDE CHAIN REMARK 500 ARG A 106 0.13 SIDE CHAIN REMARK 500 ARG B 19 0.10 SIDE CHAIN REMARK 500 ARG C 106 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 205 REMARK 610 PG4 A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 89.8 REMARK 620 3 ASP A 24 OD1 81.7 79.7 REMARK 620 4 THR A 26 O 63.5 148.5 80.1 REMARK 620 5 GLU A 31 OE1 101.7 131.6 148.0 73.5 REMARK 620 6 GLU A 31 OE2 114.3 78.7 152.9 126.2 53.6 REMARK 620 7 HOH A 305 O 159.1 85.3 77.5 113.4 96.6 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 210 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 GLU C 83 OE1 85.2 REMARK 620 3 GLU C 83 OE2 144.6 65.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD2 102.7 REMARK 620 3 ASN A 60 OD1 109.4 78.8 REMARK 620 4 THR A 62 O 81.7 174.9 102.3 REMARK 620 5 GLU A 67 OE1 103.9 88.9 146.2 87.6 REMARK 620 6 GLU A 67 OE2 69.6 65.7 142.6 114.2 48.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 ASP A 78 OD2 63.4 REMARK 620 3 GLU A 84 OE1 95.4 96.1 REMARK 620 4 GLU A 84 OE2 90.0 143.5 60.1 REMARK 620 5 HOH A 301 O 109.6 46.3 95.5 150.7 REMARK 620 6 ASP C 80 OD1 88.5 76.6 169.2 130.1 73.8 REMARK 620 7 ASP C 80 OD2 85.1 127.4 129.6 69.5 131.8 60.7 REMARK 620 8 HOH C 308 O 159.8 98.5 95.4 110.2 52.3 78.0 100.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD1 REMARK 620 2 ASP A 80 OD2 63.5 REMARK 620 3 ASP C 78 OD1 89.3 77.0 REMARK 620 4 ASP C 78 OD2 73.6 120.9 63.3 REMARK 620 5 GLU C 84 OE2 147.5 84.0 81.6 127.2 REMARK 620 6 HOH D 101 O 87.4 125.0 152.4 89.5 114.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 209 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE1 REMARK 620 2 GLU C 54 OE1 123.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 87.0 REMARK 620 3 ASN A 97 OD1 80.0 63.2 REMARK 620 4 TYR A 99 O 80.9 142.3 79.5 REMARK 620 5 GLU A 104 OE1 110.2 141.8 151.0 75.6 REMARK 620 6 GLU A 104 OE2 95.3 92.3 155.1 124.2 53.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 123 OE1 REMARK 620 2 HOH A 308 O 77.0 REMARK 620 3 HIS C 107 NE2 22.2 60.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD1 82.5 REMARK 620 3 ASP A 133 OD1 82.6 77.3 REMARK 620 4 GLN A 135 O 103.3 139.3 63.8 REMARK 620 5 GLU A 140 OE1 92.3 81.0 158.2 137.8 REMARK 620 6 GLU A 140 OE2 125.0 122.0 145.6 88.0 51.9 REMARK 620 7 HOH A 304 O 150.5 70.7 79.8 90.0 95.3 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 139 OE2 REMARK 620 2 GLU C 120 OE1 101.5 REMARK 620 3 GLU C 120 OE2 99.7 2.3 REMARK 620 4 HOH C 309 O 100.1 5.2 3.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 14 OE2 REMARK 620 2 GLU C 114 OE2 99.0 REMARK 620 3 LYS D 7 NZ 91.3 84.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 20 OD1 REMARK 620 2 ASP C 22 OD1 86.1 REMARK 620 3 ASP C 24 OD1 80.3 80.0 REMARK 620 4 THR C 26 O 63.7 146.4 80.8 REMARK 620 5 GLU C 31 OE1 100.9 129.6 150.4 73.7 REMARK 620 6 GLU C 31 OE2 113.0 76.7 152.0 127.1 54.4 REMARK 620 7 HOH C 303 O 158.0 96.8 78.8 106.1 94.0 88.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 50 OD1 REMARK 620 2 GLU C 123 OE1 35.0 REMARK 620 3 PHE D 2 O 38.5 3.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 56 OD1 REMARK 620 2 ASP C 58 OD2 96.2 REMARK 620 3 ASN C 60 OD1 106.7 86.9 REMARK 620 4 THR C 62 O 83.2 171.4 101.5 REMARK 620 5 GLU C 67 OE1 99.6 86.5 153.4 85.1 REMARK 620 6 GLU C 67 OE2 66.6 62.2 146.3 110.0 45.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD1 REMARK 620 2 ASP C 95 OD1 86.8 REMARK 620 3 ASN C 97 OD1 80.8 64.8 REMARK 620 4 TYR C 99 O 80.0 143.6 79.6 REMARK 620 5 GLU C 104 OE1 107.2 142.0 150.8 74.4 REMARK 620 6 GLU C 104 OE2 94.6 91.0 155.4 123.7 53.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 129 OD1 REMARK 620 2 ASP C 131 OD1 85.1 REMARK 620 3 ASP C 133 OD1 83.1 77.3 REMARK 620 4 GLN C 135 O 102.7 139.0 64.1 REMARK 620 5 GLU C 140 OE1 92.6 84.1 161.2 134.6 REMARK 620 6 GLU C 140 OE2 128.5 122.6 140.5 84.0 54.2 REMARK 620 N 1 2 3 4 5 DBREF 7ZRP A 1 148 UNP P0DP23 CALM1_HUMAN 2 149 DBREF 7ZRP B 1 22 UNP Q13557 KCC2D_HUMAN 294 315 DBREF 7ZRP C 1 148 UNP P0DP23 CALM1_HUMAN 2 149 DBREF 7ZRP D 2 23 UNP Q13557 KCC2D_HUMAN 294 315 SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS SEQRES 1 B 22 PHE ASN ALA ARG ARG LYS LEU LYS GLY ALA ILE LEU THR SEQRES 2 B 22 THR MET LEU ALA THR ARG ASN PHE SER SEQRES 1 C 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 C 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 C 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 C 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 C 148 ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE SEQRES 6 C 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 C 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 C 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 C 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 C 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 C 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 C 148 MET MET THR ALA LYS SEQRES 1 D 22 PHE ASN ALA ARG ARG LYS LEU LYS GLY ALA ILE LEU THR SEQRES 2 D 22 THR MET LEU ALA THR ARG ASN PHE SER HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET PG4 A 205 23 HET PG4 A 206 23 HET IMD A 207 10 HET ZN A 208 1 HET ZN A 209 1 HET ZN A 210 1 HET ZN A 211 1 HET ZN A 212 1 HET CA C 201 1 HET CA C 202 1 HET CA C 203 1 HET CA C 204 1 HET IMD C 205 10 HET ZN C 206 1 HET ZN C 207 1 HET ZN C 208 1 HET ZN C 209 1 HETNAM CA CALCIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION FORMUL 5 CA 8(CA 2+) FORMUL 9 PG4 2(C8 H18 O5) FORMUL 11 IMD 2(C3 H5 N2 1+) FORMUL 12 ZN 9(ZN 2+) FORMUL 26 HOH *36(H2 O) HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 THR A 28 LEU A 39 1 12 HELIX 3 AA3 THR A 44 GLU A 54 1 11 HELIX 4 AA4 PHE A 65 MET A 76 1 12 HELIX 5 AA5 ASP A 80 ASP A 93 1 14 HELIX 6 AA6 SER A 101 LEU A 112 1 12 HELIX 7 AA7 THR A 117 ASP A 129 1 13 HELIX 8 AA8 TYR A 138 MET A 145 1 8 HELIX 9 AA9 ASN B 2 THR B 18 1 17 HELIX 10 AB1 THR C 5 ASP C 20 1 16 HELIX 11 AB2 THR C 28 LEU C 39 1 12 HELIX 12 AB3 THR C 44 GLU C 54 1 11 HELIX 13 AB4 ASP C 64 MET C 76 1 13 HELIX 14 AB5 ASP C 80 ASP C 93 1 14 HELIX 15 AB6 SER C 101 GLY C 113 1 13 HELIX 16 AB7 THR C 117 ASP C 129 1 13 HELIX 17 AB8 TYR C 138 THR C 146 1 9 HELIX 18 AB9 ASN D 3 THR D 19 1 17 SHEET 1 AA1 2 THR A 26 ILE A 27 0 SHEET 2 AA1 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 SHEET 1 AA2 2 TYR A 99 ILE A 100 0 SHEET 2 AA2 2 VAL A 136 ASN A 137 -1 O VAL A 136 N ILE A 100 SHEET 1 AA3 2 TYR C 99 ILE C 100 0 SHEET 2 AA3 2 VAL C 136 ASN C 137 -1 O VAL C 136 N ILE C 100 LINK OD1 ASP A 20 CA CA A 201 1555 1555 2.41 LINK OD1 ASP A 22 CA CA A 201 1555 1555 2.38 LINK OD1 ASP A 24 CA CA A 201 1555 1555 2.45 LINK O THR A 26 CA CA A 201 1555 1555 2.39 LINK OE1 GLU A 31 CA CA A 201 1555 1555 2.45 LINK OE2 GLU A 31 CA CA A 201 1555 1555 2.44 LINK OE2 GLU A 54 ZN ZN A 210 1555 1555 2.01 LINK OD1 ASP A 56 CA CA A 202 1555 1555 2.42 LINK OD2 ASP A 58 CA CA A 202 1555 1555 2.45 LINK OD1 ASN A 60 CA CA A 202 1555 1555 2.41 LINK O THR A 62 CA CA A 202 1555 1555 2.43 LINK OE1 GLU A 67 CA CA A 202 1555 1555 2.40 LINK OE2 GLU A 67 CA CA A 202 1555 1555 2.86 LINK OD1 ASP A 78 ZN ZN A 212 1555 1555 2.09 LINK OD2 ASP A 78 ZN ZN A 212 1555 1555 2.10 LINK OD1 ASP A 80 ZN ZN C 209 1555 1555 2.10 LINK OD2 ASP A 80 ZN ZN C 209 1555 1555 2.04 LINK OE1 GLU A 83 ZN ZN A 209 1555 1555 2.04 LINK OE1 GLU A 84 ZN ZN A 212 1555 1555 2.14 LINK OE2 GLU A 84 ZN ZN A 212 1555 1555 2.10 LINK OD1 ASP A 93 CA CA A 203 1555 1555 2.40 LINK OD1 ASP A 95 CA CA A 203 1555 1555 2.45 LINK OD1 ASN A 97 CA CA A 203 1555 1555 2.44 LINK O TYR A 99 CA CA A 203 1555 1555 2.39 LINK OE1 GLU A 104 CA CA A 203 1555 1555 2.42 LINK OE2 GLU A 104 CA CA A 203 1555 1555 2.44 LINK OD2 ASP A 122 ZN ZN A 211 1555 1555 2.03 LINK OE1 GLU A 123 ZN ZN A 208 1555 1555 2.03 LINK OD1 ASP A 129 CA CA A 204 1555 1555 2.41 LINK OD1 ASP A 131 CA CA A 204 1555 1555 2.44 LINK OD1 ASP A 133 CA CA A 204 1555 1555 2.43 LINK O GLN A 135 CA CA A 204 1555 1555 2.36 LINK OE2 GLU A 139 ZN ZN C 206 1555 2444 1.98 LINK OE1 GLU A 140 CA CA A 204 1555 1555 2.48 LINK OE2 GLU A 140 CA CA A 204 1555 1555 2.43 LINK CA CA A 201 O HOH A 305 1555 1555 2.85 LINK CA CA A 204 O HOH A 304 1555 1555 2.47 LINK ZN ZN A 208 O HOH A 308 1555 1555 2.07 LINK ZN ZN A 208 NE2 HIS C 107 4445 1555 2.32 LINK ZN ZN A 209 OE1 GLU C 54 1555 1555 2.01 LINK ZN ZN A 210 OE1 GLU C 83 1555 1555 2.01 LINK ZN ZN A 210 OE2 GLU C 83 1555 1555 2.05 LINK ZN ZN A 212 O HOH A 301 1555 1555 2.70 LINK ZN ZN A 212 OD1 ASP C 80 1555 1555 2.16 LINK ZN ZN A 212 OD2 ASP C 80 1555 1555 2.06 LINK ZN ZN A 212 O HOH C 308 1555 1555 2.18 LINK OE2 GLU C 14 ZN ZN C 208 1555 1555 1.98 LINK OD1 ASP C 20 CA CA C 201 1555 1555 2.43 LINK OD1 ASP C 22 CA CA C 201 1555 1555 2.43 LINK OD1 ASP C 24 CA CA C 201 1555 1555 2.42 LINK O THR C 26 CA CA C 201 1555 1555 2.39 LINK OE1 GLU C 31 CA CA C 201 1555 1555 2.42 LINK OE2 GLU C 31 CA CA C 201 1555 1555 2.41 LINK OD1 ASP C 50 ZN ZN C 207 1555 1555 2.07 LINK OD1 ASP C 56 CA CA C 202 1555 1555 2.44 LINK OD2 ASP C 58 CA CA C 202 1555 1555 2.40 LINK OD1 ASN C 60 CA CA C 202 1555 1555 2.43 LINK O THR C 62 CA CA C 202 1555 1555 2.42 LINK OE1 GLU C 67 CA CA C 202 1555 1555 2.44 LINK OE2 GLU C 67 CA CA C 202 1555 1555 3.05 LINK OD1 ASP C 78 ZN ZN C 209 1555 1555 2.10 LINK OD2 ASP C 78 ZN ZN C 209 1555 1555 2.06 LINK OE2 GLU C 84 ZN ZN C 209 1555 1555 2.01 LINK OD1 ASP C 93 CA CA C 203 1555 1555 2.44 LINK OD1 ASP C 95 CA CA C 203 1555 1555 2.43 LINK OD1 ASN C 97 CA CA C 203 1555 1555 2.40 LINK O TYR C 99 CA CA C 203 1555 1555 2.40 LINK OE1 GLU C 104 CA CA C 203 1555 1555 2.43 LINK OE2 GLU C 104 CA CA C 203 1555 1555 2.43 LINK OE2 GLU C 114 ZN ZN C 208 1555 1555 2.02 LINK OE1 GLU C 120 ZN ZN C 206 1555 1555 2.13 LINK OE2 GLU C 120 ZN ZN C 206 1555 1555 2.08 LINK OE1 GLU C 123 ZN ZN C 207 1555 2445 2.44 LINK OD1 ASP C 129 CA CA C 204 1555 1555 2.40 LINK OD1 ASP C 131 CA CA C 204 1555 1555 2.40 LINK OD1 ASP C 133 CA CA C 204 1555 1555 2.42 LINK O GLN C 135 CA CA C 204 1555 1555 2.38 LINK OE1 GLU C 140 CA CA C 204 1555 1555 2.42 LINK OE2 GLU C 140 CA CA C 204 1555 1555 2.43 LINK CA CA C 201 O HOH C 303 1555 1555 2.41 LINK ZN ZN C 206 O HOH C 309 1555 1555 2.59 LINK ZN ZN C 207 O PHE D 2 2445 1555 2.14 LINK ZN ZN C 208 NZ LYS D 7 1555 1555 2.09 LINK ZN ZN C 209 O HOH D 101 1555 1555 2.17 CRYST1 64.283 72.590 78.156 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012795 0.00000