HEADER OXIDOREDUCTASE 05-MAY-22 7ZRW TITLE F61V CYTOCHROME C PRIME BETA FROM METHYLOCOCCUS CAPSULATUS (BATH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS STR. BATH; SOURCE 3 ORGANISM_TAXID: 243233; SOURCE 4 GENE: CCP, MCA2394; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYTOCHROME C PRIME, BETA-SHEET, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.R.ADAMS,M.A.HOUGH REVDAT 3 07-FEB-24 7ZRW 1 REMARK REVDAT 2 22-NOV-23 7ZRW 1 JRNL REVDAT 1 17-MAY-23 7ZRW 0 JRNL AUTH H.R.ADAMS,D.A.SVISTUNENKO,M.T.WILSON,S.FUJII,R.W.STRANGE, JRNL AUTH 2 Z.A.HARDY,P.A.VAZQUEZ,T.DABRITZ,G.J.STREBLOW,C.R.ANDREW, JRNL AUTH 3 M.A.HOUGH JRNL TITL A HEME POCKET AROMATIC QUADRUPOLE MODULATES GAS BINDING TO JRNL TITL 2 CYTOCHROME C'-BETA : IMPLICATIONS FOR NO SENSORS. JRNL REF J.BIOL.CHEM. V. 299 04742 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37100286 JRNL DOI 10.1016/J.JBC.2023.104742 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1939 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2380 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2128 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3255 ; 2.060 ; 1.749 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4899 ; 1.362 ; 1.631 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 7.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;34.332 ;21.729 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;13.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2907 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 585 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 138 B 3 138 4221 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ZRW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28359 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 74.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 1.92800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 6HIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITRES OF 15 MG/ML PROTEIN IN REMARK 280 0.1 M HEPES BUFFER, PH 7.5, MIXED WITH WITH AN EQUIVALENT VOLUME REMARK 280 OF RESERVOIR SOLUTION CONTAINING 0.01 M ZNSO4, 30% PEG 550 (V/V) REMARK 280 AND 0.1 M MES, PH 6.5. CRYOPROTECTION IN ML PLUS 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.73650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.73650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.73650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.73650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.73650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.73650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.73650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.73650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.73650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.73650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.73650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.73650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.73650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.73650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.73650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.73650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.73650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.73650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 ASN A -18 REMARK 465 LYS A -17 REMARK 465 PRO A -16 REMARK 465 SER A -15 REMARK 465 PHE A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 VAL A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 VAL A -7 REMARK 465 VAL A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 VAL A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 MET B -19 REMARK 465 ASN B -18 REMARK 465 LYS B -17 REMARK 465 PRO B -16 REMARK 465 SER B -15 REMARK 465 PHE B -14 REMARK 465 LEU B -13 REMARK 465 LEU B -12 REMARK 465 VAL B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 VAL B -7 REMARK 465 VAL B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 VAL B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 68 CG CD OE1 OE2 REMARK 480 LYS A 89 CD CE NZ REMARK 480 LYS A 109 NZ REMARK 480 ASP A 138 CG OD1 OD2 REMARK 480 GLN B 67 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS B 123 FE HEC B 201 2.00 REMARK 500 O HOH B 341 O HOH B 345 2.08 REMARK 500 O HOH A 340 O HOH A 347 2.13 REMARK 500 OD1 ASP B 65 O HOH B 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 61.42 61.40 REMARK 500 LYS A 109 57.60 -111.93 REMARK 500 LYS B 109 60.08 -115.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 HIS A 71 NE2 0.0 REMARK 620 3 HOH A 331 O 89.6 89.6 REMARK 620 4 HOH A 331 O 165.2 165.2 78.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 123 NE2 REMARK 620 2 HEC A 201 NA 97.1 REMARK 620 3 HEC A 201 NB 97.5 88.7 REMARK 620 4 HEC A 201 NC 98.0 164.8 91.1 REMARK 620 5 HEC A 201 ND 98.5 89.5 164.0 86.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZQZ RELATED DB: PDB DBREF 7ZRW A -19 138 UNP G1UBD5 G1UBD5_METCA 1 158 DBREF 7ZRW B -19 138 UNP G1UBD5 G1UBD5_METCA 1 158 SEQADV 7ZRW VAL A 61 UNP G1UBD5 PHE 81 ENGINEERED MUTATION SEQADV 7ZRW VAL B 61 UNP G1UBD5 PHE 81 ENGINEERED MUTATION SEQRES 1 A 158 MET ASN LYS PRO SER PHE LEU LEU VAL GLY LEU LEU VAL SEQRES 2 A 158 VAL SER GLY VAL LEU GLY ALA ALA GLU THR LYS VAL LYS SEQRES 3 A 158 TYR PRO ASP GLY PHE ARG SER TRP TYR HIS VAL LYS SER SEQRES 4 A 158 MET VAL ILE GLN PRO GLY HIS PRO LEU GLU ASN PRO PHE SEQRES 5 A 158 GLY GLY ILE HIS HIS VAL TYR ALA ASN ALA GLU ALA ILE SEQRES 6 A 158 GLN GLY LEU ARG GLY GLY ASN TYR PRO ASP GLY ALA VAL SEQRES 7 A 158 LEU VAL VAL ASP LEU PHE ASP TYR GLN GLU ASP ASN HIS SEQRES 8 A 158 ALA LEU VAL GLU GLY LYS ARG LYS LEU ILE GLY VAL MET SEQRES 9 A 158 GLU ARG ASP ALA LYS ARG PHE SER ALA THR GLY GLY TRP SEQRES 10 A 158 GLY TYR GLU GLY PHE GLY GLU GLY LYS PRO ASP LYS ARG SEQRES 11 A 158 LEU VAL THR ASP GLY GLY GLN GLY CYS PHE GLY CYS HIS SEQRES 12 A 158 ALA ALA GLN LYS GLU SER GLN TYR VAL PHE SER ARG LEU SEQRES 13 A 158 ARG ASP SEQRES 1 B 158 MET ASN LYS PRO SER PHE LEU LEU VAL GLY LEU LEU VAL SEQRES 2 B 158 VAL SER GLY VAL LEU GLY ALA ALA GLU THR LYS VAL LYS SEQRES 3 B 158 TYR PRO ASP GLY PHE ARG SER TRP TYR HIS VAL LYS SER SEQRES 4 B 158 MET VAL ILE GLN PRO GLY HIS PRO LEU GLU ASN PRO PHE SEQRES 5 B 158 GLY GLY ILE HIS HIS VAL TYR ALA ASN ALA GLU ALA ILE SEQRES 6 B 158 GLN GLY LEU ARG GLY GLY ASN TYR PRO ASP GLY ALA VAL SEQRES 7 B 158 LEU VAL VAL ASP LEU PHE ASP TYR GLN GLU ASP ASN HIS SEQRES 8 B 158 ALA LEU VAL GLU GLY LYS ARG LYS LEU ILE GLY VAL MET SEQRES 9 B 158 GLU ARG ASP ALA LYS ARG PHE SER ALA THR GLY GLY TRP SEQRES 10 B 158 GLY TYR GLU GLY PHE GLY GLU GLY LYS PRO ASP LYS ARG SEQRES 11 B 158 LEU VAL THR ASP GLY GLY GLN GLY CYS PHE GLY CYS HIS SEQRES 12 B 158 ALA ALA GLN LYS GLU SER GLN TYR VAL PHE SER ARG LEU SEQRES 13 B 158 ARG ASP HET HEC A 201 43 HET ZN A 202 1 HET GOL A 203 6 HET HEC B 201 43 HET GOL B 202 6 HETNAM HEC HEME C HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 ZN ZN 2+ FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *94(H2 O) HELIX 1 AA1 GLY A 10 TRP A 14 5 5 HELIX 2 AA2 LEU A 28 GLY A 33 1 6 HELIX 3 AA3 ASN A 41 ARG A 49 1 9 HELIX 4 AA4 PHE A 91 GLY A 95 5 5 HELIX 5 AA5 GLY A 116 ALA A 124 1 9 HELIX 6 AA6 ALA A 125 GLN A 130 5 6 HELIX 7 AA7 GLY B 10 TRP B 14 5 5 HELIX 8 AA8 LEU B 28 GLY B 33 1 6 HELIX 9 AA9 ASN B 41 ARG B 49 1 9 HELIX 10 AB1 PHE B 91 GLY B 95 5 5 HELIX 11 AB2 GLY B 116 ALA B 124 1 9 HELIX 12 AB3 ALA B 125 GLN B 130 5 6 SHEET 1 AA1 7 TRP A 97 GLY A 103 0 SHEET 2 AA1 7 ALA A 72 ARG A 86 -1 N GLU A 85 O GLY A 98 SHEET 3 AA1 7 VAL A 58 GLU A 68 -1 N ASP A 65 O GLY A 76 SHEET 4 AA1 7 GLY A 34 ALA A 40 -1 N ILE A 35 O PHE A 64 SHEET 5 AA1 7 TYR A 15 ILE A 22 -1 N LYS A 18 O VAL A 38 SHEET 6 AA1 7 ALA B 72 ARG B 86 -1 O LEU B 73 N VAL A 21 SHEET 7 AA1 7 TRP B 97 GLY B 103 -1 O GLY B 98 N GLU B 85 SHEET 1 AA2 7 TRP A 97 GLY A 103 0 SHEET 2 AA2 7 ALA A 72 ARG A 86 -1 N GLU A 85 O GLY A 98 SHEET 3 AA2 7 TYR B 15 ILE B 22 -1 O VAL B 21 N LEU A 73 SHEET 4 AA2 7 GLY B 34 ALA B 40 -1 O VAL B 38 N LYS B 18 SHEET 5 AA2 7 VAL B 58 ASP B 69 -1 O PHE B 64 N ILE B 35 SHEET 6 AA2 7 ALA B 72 ARG B 86 -1 O GLY B 76 N ASP B 65 SHEET 7 AA2 7 TRP B 97 GLY B 103 -1 O GLY B 98 N GLU B 85 LINK SG CYS A 119 CAB HEC A 201 1555 1555 1.77 LINK SG CYS A 122 CAC HEC A 201 1555 1555 1.79 LINK SG CYS B 119 CAB HEC B 201 1555 1555 1.77 LINK SG CYS B 122 CAC HEC B 201 1555 1555 1.79 LINK NE2 HIS A 71 ZN A ZN A 202 1555 1555 2.00 LINK NE2 HIS A 71 ZN A ZN A 202 1555 8555 2.00 LINK NE2 HIS A 123 FE HEC A 201 1555 1555 2.08 LINK ZN A ZN A 202 O HOH A 331 1555 1555 2.08 LINK ZN A ZN A 202 O HOH A 331 1555 8555 2.08 CISPEP 1 ASN A 30 PRO A 31 0 3.99 CISPEP 2 ASN B 30 PRO B 31 0 3.86 CRYST1 105.473 105.473 105.473 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009481 0.00000