HEADER TOXIN 09-MAY-22 7ZTB TITLE STRUCTURE OF THE SALMONELLA TRNA PYROPHOSPHOKINASE CAPREL COMPND MOL_ID: 1; COMPND 2 MOLECULE: RELA/SPOT FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE SJ46; SOURCE 3 ORGANISM_TAXID: 1815968; SOURCE 4 GENE: J46_0058; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TOXIN-ANTITOXIN, SMALL ALARMONE SYNTHETASE, TRNA PYROPHOSPHOKINASE, KEYWDS 2 CAPREL, BACTERIAL DEFENCE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARCIA-PINO REVDAT 4 31-JAN-24 7ZTB 1 REMARK REVDAT 3 14-DEC-22 7ZTB 1 JRNL REVDAT 2 30-NOV-22 7ZTB 1 JRNL REVDAT 1 23-NOV-22 7ZTB 0 JRNL AUTH T.ZHANG,H.TAMMAN,K.COPPIETERS 'T WALLANT,T.KURATA,M.LEROUX, JRNL AUTH 2 S.SRIKANT,T.BRODIAZHENKO,A.CEPAUSKAS,A.TALAVERA,C.MARTENS, JRNL AUTH 3 G.C.ATKINSON,V.HAURYLIUK,A.GARCIA-PINO,M.T.LAUB JRNL TITL DIRECT ACTIVATION OF A BACTERIAL INNATE IMMUNE SYSTEM BY A JRNL TITL 2 VIRAL CAPSID PROTEIN. JRNL REF NATURE V. 612 132 2022 JRNL REFN ESSN 1476-4687 JRNL PMID 36385533 JRNL DOI 10.1038/S41586-022-05444-Z REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (3-FEB-2022) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 63.9 REMARK 3 NUMBER OF REFLECTIONS : 20877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 395 REMARK 3 BIN R VALUE (WORKING SET) : 0.2738 REMARK 3 BIN FREE R VALUE : 0.3287 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 227 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.61320 REMARK 3 B22 (A**2) : 5.00950 REMARK 3 B33 (A**2) : 2.60370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.14700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.357 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5389 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7277 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1898 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 910 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5389 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 741 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4303 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.73 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -8.8629 13.0971 -17.8803 REMARK 3 T TENSOR REMARK 3 T11: -0.1523 T22: 0.0683 REMARK 3 T33: 0.0128 T12: -0.0110 REMARK 3 T13: -0.0151 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.1308 L22: 0.0214 REMARK 3 L33: 0.8242 L12: 0.3125 REMARK 3 L13: -0.2271 L23: 0.4538 REMARK 3 S TENSOR REMARK 3 S11: 0.1029 S12: -0.0306 S13: 0.0887 REMARK 3 S21: -0.0194 S22: -0.0420 S23: -0.0146 REMARK 3 S31: 0.0486 S32: -0.0357 S33: -0.0608 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -31.6513 47.1696 15.2267 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: -0.0763 REMARK 3 T33: -0.0478 T12: 0.0661 REMARK 3 T13: 0.1450 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 0.7112 L22: 0.7372 REMARK 3 L33: 0.6507 L12: -0.4546 REMARK 3 L13: -0.2384 L23: 1.1239 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: 0.0744 S13: 0.0024 REMARK 3 S21: 0.2459 S22: 0.0042 S23: 0.0662 REMARK 3 S31: 0.3359 S32: -0.0192 S33: 0.0710 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.312 REMARK 200 RESOLUTION RANGE LOW (A) : 68.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6S2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20000, 20%, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.16K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 68.09800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 TYR A 6 REMARK 465 GLN A 7 REMARK 465 SER A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 CYS A 11 REMARK 465 GLU A 12 REMARK 465 LEU A 13 REMARK 465 PRO A 93 REMARK 465 SER A 94 REMARK 465 LEU A 95 REMARK 465 ASP A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 ALA A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 ASN A 102 REMARK 465 ALA A 103 REMARK 465 LYS A 298 REMARK 465 ASN A 299 REMARK 465 GLY A 300 REMARK 465 LYS A 301 REMARK 465 ASP A 302 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 465 VAL B 5 REMARK 465 TYR B 6 REMARK 465 GLN B 7 REMARK 465 SER B 8 REMARK 465 GLN B 9 REMARK 465 LYS B 10 REMARK 465 CYS B 11 REMARK 465 SER B 94 REMARK 465 LEU B 95 REMARK 465 ASP B 96 REMARK 465 GLY B 97 REMARK 465 GLY B 98 REMARK 465 ALA B 99 REMARK 465 THR B 100 REMARK 465 ASN B 101 REMARK 465 ASN B 102 REMARK 465 ALA B 103 REMARK 465 GLU B 168 REMARK 465 ASN B 169 REMARK 465 LEU B 280 REMARK 465 PRO B 281 REMARK 465 LYS B 282 REMARK 465 ASN B 283 REMARK 465 GLY B 300 REMARK 465 LYS B 301 REMARK 465 VAL B 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 14 CG CD CE NZ REMARK 470 TYR A 15 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 29 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 79 NE CZ NH1 NH2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 104 CG1 CG2 CD1 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 ASN A 169 CG OD1 ND2 REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ASN A 283 CG OD1 ND2 REMARK 470 ILE A 296 CG1 CG2 CD1 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 ARG B 28 NE CZ NH1 NH2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 MET B 55 CG SD CE REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 ASN B 72 CG OD1 ND2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 104 CG1 CG2 CD1 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ASN B 171 CG OD1 ND2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ASN B 210 CG OD1 ND2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LEU B 276 CG CD1 CD2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS B 278 CG CD CE NZ REMARK 470 HIS B 284 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 296 CG1 CG2 CD1 REMARK 470 ARG B 314 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 LYS B 346 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 169 -70.28 -134.11 REMARK 500 ASN A 171 35.93 -96.68 REMARK 500 HIS A 213 64.14 36.10 REMARK 500 CYS A 234 83.19 -158.19 REMARK 500 ASN A 294 78.80 -109.51 REMARK 500 GLU A 317 30.57 -94.25 REMARK 500 ASN A 354 34.96 -99.68 REMARK 500 ASN B 171 54.21 -94.57 REMARK 500 CYS B 234 83.31 -157.27 REMARK 500 LYS B 278 57.78 -90.60 REMARK 500 ASN B 294 79.03 -110.26 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7ZTB A 1 373 UNP A0A1B0VBT5_9CAUD DBREF2 7ZTB A A0A1B0VBT5 1 373 DBREF1 7ZTB B 1 373 UNP A0A1B0VBT5_9CAUD DBREF2 7ZTB B A0A1B0VBT5 1 373 SEQRES 1 A 373 MET GLY SER GLU VAL TYR GLN SER GLN LYS CYS GLU LEU SEQRES 2 A 373 LYS TYR SER LYS SER GLN ILE GLU LYS ALA ALA ARG LYS SEQRES 3 A 373 ILE ARG HIS GLY CYS GLU GLY ALA GLU ARG GLU GLU ALA SEQRES 4 A 373 ILE LYS MET ILE GLN ASN PHE ARG GLU LEU HIS LEU TYR SEQRES 5 A 373 PRO LEU MET LEU MET LYS ASN HIS LEU ASP ARG ALA ALA SEQRES 6 A 373 LYS LYS VAL ASP LYS GLU ASN LYS ILE ILE VAL ALA ARG SEQRES 7 A 373 ARG LEU LYS ARG LEU SER THR ILE ILE ASP LYS LEU GLU SEQRES 8 A 373 ARG PRO SER LEU ASP GLY GLY ALA THR ASN ASN ALA ILE SEQRES 9 A 373 ALA LEU THR ARG MET GLN ASP ILE GLY GLY CYS ARG ALA SEQRES 10 A 373 ILE VAL ARG ASN ILE GLU GLN LEU LYS LYS LEU LYS ASP SEQRES 11 A 373 ARG LEU VAL LYS SER ARG SER LYS HIS LYS ILE LEU LYS SEQRES 12 A 373 GLU TYR ASP TYR LEU THR PRO LYS PRO SER GLY TYR SER SEQRES 13 A 373 GLY ILE HIS LEU ALA TYR SER CYS PHE ASP GLU GLU ASN SEQRES 14 A 373 GLY ASN ASN PRO TRP SER LYS THR LYS ILE GLU VAL GLN SEQRES 15 A 373 LEU ARG THR GLU LEU GLN HIS ALA TRP ALA THR SER LEU SEQRES 16 A 373 GLU ILE ILE ASP THR LEU GLU ASN ILE LYS LEU LYS THR SEQRES 17 A 373 SER ASN GLU GLY HIS PRO GLU TRP ARG ARG PHE PHE TYR SEQRES 18 A 373 LEU SER GLY CYS LEU VAL ALA HIS ASP GLU GLY ALA CYS SEQRES 19 A 373 ILE LEU ASP ASP GLU THR ILE LYS ASN TYR GLN THR GLU SEQRES 20 A 373 LEU LYS THR LEU GLU GLU ALA LEU SER VAL ARG SER LYS SEQRES 21 A 373 LEU SER THR TYR THR PHE ALA MET LYS LEU THR SER ASP SEQRES 22 A 373 ALA ASN LEU LYS LYS SER LEU PRO LYS ASN HIS ASN GLY SEQRES 23 A 373 PHE PHE LEU VAL ARG MET ARG ASN ALA ILE THR LYS ASN SEQRES 24 A 373 GLY LYS ASP THR GLY LYS PHE LEU VAL SER VAL LYS PRO SEQRES 25 A 373 PHE ARG LYS LYS GLU SER GLU GLN ALA LEU GLN GLU LEU SEQRES 26 A 373 ASN LYS ASP ASP ALA ASP PRO GLU VAL LEU ILE ALA VAL SEQRES 27 A 373 LEU LEU ALA THR ASN ASN ILE LYS SER LEU LYS LYS ALA SEQRES 28 A 373 TYR PRO ASN TYR PHE GLY SER THR ASN GLN PHE GLY ARG SEQRES 29 A 373 PHE LEU SER ARG HIS ILE ASP THR VAL SEQRES 1 B 373 MET GLY SER GLU VAL TYR GLN SER GLN LYS CYS GLU LEU SEQRES 2 B 373 LYS TYR SER LYS SER GLN ILE GLU LYS ALA ALA ARG LYS SEQRES 3 B 373 ILE ARG HIS GLY CYS GLU GLY ALA GLU ARG GLU GLU ALA SEQRES 4 B 373 ILE LYS MET ILE GLN ASN PHE ARG GLU LEU HIS LEU TYR SEQRES 5 B 373 PRO LEU MET LEU MET LYS ASN HIS LEU ASP ARG ALA ALA SEQRES 6 B 373 LYS LYS VAL ASP LYS GLU ASN LYS ILE ILE VAL ALA ARG SEQRES 7 B 373 ARG LEU LYS ARG LEU SER THR ILE ILE ASP LYS LEU GLU SEQRES 8 B 373 ARG PRO SER LEU ASP GLY GLY ALA THR ASN ASN ALA ILE SEQRES 9 B 373 ALA LEU THR ARG MET GLN ASP ILE GLY GLY CYS ARG ALA SEQRES 10 B 373 ILE VAL ARG ASN ILE GLU GLN LEU LYS LYS LEU LYS ASP SEQRES 11 B 373 ARG LEU VAL LYS SER ARG SER LYS HIS LYS ILE LEU LYS SEQRES 12 B 373 GLU TYR ASP TYR LEU THR PRO LYS PRO SER GLY TYR SER SEQRES 13 B 373 GLY ILE HIS LEU ALA TYR SER CYS PHE ASP GLU GLU ASN SEQRES 14 B 373 GLY ASN ASN PRO TRP SER LYS THR LYS ILE GLU VAL GLN SEQRES 15 B 373 LEU ARG THR GLU LEU GLN HIS ALA TRP ALA THR SER LEU SEQRES 16 B 373 GLU ILE ILE ASP THR LEU GLU ASN ILE LYS LEU LYS THR SEQRES 17 B 373 SER ASN GLU GLY HIS PRO GLU TRP ARG ARG PHE PHE TYR SEQRES 18 B 373 LEU SER GLY CYS LEU VAL ALA HIS ASP GLU GLY ALA CYS SEQRES 19 B 373 ILE LEU ASP ASP GLU THR ILE LYS ASN TYR GLN THR GLU SEQRES 20 B 373 LEU LYS THR LEU GLU GLU ALA LEU SER VAL ARG SER LYS SEQRES 21 B 373 LEU SER THR TYR THR PHE ALA MET LYS LEU THR SER ASP SEQRES 22 B 373 ALA ASN LEU LYS LYS SER LEU PRO LYS ASN HIS ASN GLY SEQRES 23 B 373 PHE PHE LEU VAL ARG MET ARG ASN ALA ILE THR LYS ASN SEQRES 24 B 373 GLY LYS ASP THR GLY LYS PHE LEU VAL SER VAL LYS PRO SEQRES 25 B 373 PHE ARG LYS LYS GLU SER GLU GLN ALA LEU GLN GLU LEU SEQRES 26 B 373 ASN LYS ASP ASP ALA ASP PRO GLU VAL LEU ILE ALA VAL SEQRES 27 B 373 LEU LEU ALA THR ASN ASN ILE LYS SER LEU LYS LYS ALA SEQRES 28 B 373 TYR PRO ASN TYR PHE GLY SER THR ASN GLN PHE GLY ARG SEQRES 29 B 373 PHE LEU SER ARG HIS ILE ASP THR VAL HET CL A 401 1 HET NA A 402 1 HET NA B 401 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 3 CL CL 1- FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *227(H2 O) HELIX 1 AA1 SER A 16 HIS A 29 1 14 HELIX 2 AA2 GLY A 33 HIS A 50 1 18 HELIX 3 AA3 HIS A 50 ASP A 69 1 20 HELIX 4 AA4 ARG A 82 ARG A 92 1 11 HELIX 5 AA5 ASN A 121 SER A 135 1 15 HELIX 6 AA6 GLU A 186 GLU A 202 1 17 HELIX 7 AA7 HIS A 213 GLU A 231 1 19 HELIX 8 AA8 ASP A 237 SER A 256 1 20 HELIX 9 AA9 SER A 256 SER A 272 1 17 HELIX 10 AB1 ASP A 273 LEU A 280 1 8 HELIX 11 AB2 ARG A 314 LYS A 316 5 3 HELIX 12 AB3 GLU A 317 ASP A 328 1 12 HELIX 13 AB4 ASP A 329 ASP A 331 5 3 HELIX 14 AB5 THR A 342 TYR A 352 1 11 HELIX 15 AB6 ASN A 354 ASP A 371 1 18 HELIX 16 AB7 SER B 16 HIS B 29 1 14 HELIX 17 AB8 GLY B 33 HIS B 50 1 18 HELIX 18 AB9 HIS B 50 ASP B 69 1 20 HELIX 19 AC1 ARG B 82 ARG B 92 1 11 HELIX 20 AC2 ASN B 121 SER B 135 1 15 HELIX 21 AC3 GLU B 186 GLU B 202 1 17 HELIX 22 AC4 HIS B 213 GLU B 231 1 19 HELIX 23 AC5 ASP B 237 SER B 256 1 20 HELIX 24 AC6 SER B 256 SER B 272 1 17 HELIX 25 AC7 GLU B 317 ASP B 328 1 12 HELIX 26 AC8 ASP B 329 ASP B 331 5 3 HELIX 27 AC9 THR B 342 TYR B 352 1 11 HELIX 28 AD1 ASN B 354 ASP B 371 1 18 SHEET 1 AA1 5 ILE A 75 LEU A 80 0 SHEET 2 AA1 5 GLY A 113 VAL A 119 -1 O ILE A 118 N ILE A 75 SHEET 3 AA1 5 THR A 177 THR A 185 1 O GLN A 182 N CYS A 115 SHEET 4 AA1 5 GLY A 157 CYS A 164 -1 N ILE A 158 O LEU A 183 SHEET 5 AA1 5 LYS A 140 TYR A 147 -1 N TYR A 145 O HIS A 159 SHEET 1 AA2 3 PHE A 306 PHE A 313 0 SHEET 2 AA2 3 PHE A 287 ASN A 294 -1 N ARG A 293 O LEU A 307 SHEET 3 AA2 3 VAL A 334 ALA A 341 -1 O LEU A 340 N PHE A 288 SHEET 1 AA3 5 ILE B 75 LEU B 80 0 SHEET 2 AA3 5 GLY B 113 VAL B 119 -1 O ARG B 116 N ALA B 77 SHEET 3 AA3 5 THR B 177 THR B 185 1 O GLN B 182 N CYS B 115 SHEET 4 AA3 5 GLY B 157 CYS B 164 -1 N ILE B 158 O LEU B 183 SHEET 5 AA3 5 LYS B 140 TYR B 147 -1 N TYR B 145 O HIS B 159 SHEET 1 AA4 3 PHE B 306 ARG B 314 0 SHEET 2 AA4 3 GLY B 286 ASN B 294 -1 N ARG B 293 O LEU B 307 SHEET 3 AA4 3 VAL B 334 ALA B 341 -1 O LEU B 340 N PHE B 288 CRYST1 49.573 136.196 57.782 90.00 102.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020172 0.000000 0.004546 0.00000 SCALE2 0.000000 0.007342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017740 0.00000