HEADER VIRAL PROTEIN 11-MAY-22 7ZTW TITLE CRYSTAL STRUCTURE OF HUMAN PARECHOVIRUS 1 2A PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN 2A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: P2A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: COMPND 8 SPYGQQPQNRMMKLAYLDRGFYKHYGIIVGDHVYQLDSDDIFKTALTGKAKFTKTKLTSDWVIEEECEL COMPND 9 DYFRIKYLESA VDSEHIFSVDKNCETIAKDIFGTHTLSQHQAIGLVGTILLTAGLMSTIKTPVNAVTI COMPND 10 KEFFNHAIDGDEQ SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PARECHOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12063; SOURCE 4 STRAIN: HARRIS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 2A PROTEIN, UNKNOWN FUNCTION, NLPC/P60 PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.VON CASTELMUR,A.PERRAKIS REVDAT 1 24-MAY-23 7ZTW 0 JRNL AUTH E.VON CASTELMUR,A.PERRAKIS JRNL TITL HUMAN PARECHOVIRUS 1 2A PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 40816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4625 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4419 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6243 ; 1.411 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10190 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 562 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;36.099 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 840 ;13.540 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.525 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5138 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1054 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 146 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9403 27.3474 25.5077 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1265 REMARK 3 T33: 0.0358 T12: -0.0036 REMARK 3 T13: 0.0084 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 0.8394 L22: 1.2940 REMARK 3 L33: 2.4190 L12: -0.0664 REMARK 3 L13: -0.5930 L23: 0.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: -0.0563 S13: 0.0822 REMARK 3 S21: 0.0126 S22: 0.0956 S23: -0.1763 REMARK 3 S31: -0.0582 S32: 0.2026 S33: -0.1535 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7369 28.3381 42.7251 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1609 REMARK 3 T33: 0.0073 T12: 0.0343 REMARK 3 T13: 0.0130 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.8133 L22: 0.7412 REMARK 3 L33: 3.5319 L12: 0.2251 REMARK 3 L13: -0.2500 L23: 0.2291 REMARK 3 S TENSOR REMARK 3 S11: 0.0797 S12: -0.0913 S13: 0.0628 REMARK 3 S21: 0.0594 S22: -0.0445 S23: 0.0544 REMARK 3 S31: -0.2052 S32: -0.4894 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 146 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9189 -4.7564 16.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.3018 T22: 0.0948 REMARK 3 T33: 0.0517 T12: 0.0244 REMARK 3 T13: 0.0690 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.4533 L22: 0.5895 REMARK 3 L33: 1.9338 L12: 0.1723 REMARK 3 L13: 0.2902 L23: -0.3360 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.0091 S13: -0.0187 REMARK 3 S21: -0.1312 S22: -0.0003 S23: -0.1371 REMARK 3 S31: 0.1595 S32: 0.0726 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 146 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1310 -4.0751 -3.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.2500 T22: 0.1680 REMARK 3 T33: 0.0309 T12: -0.0489 REMARK 3 T13: 0.0429 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.4780 L22: 0.5226 REMARK 3 L33: 3.1337 L12: -0.3466 REMARK 3 L13: -0.2242 L23: 0.1115 REMARK 3 S TENSOR REMARK 3 S11: 0.0831 S12: 0.0820 S13: -0.0608 REMARK 3 S21: 0.0124 S22: -0.0198 S23: 0.0934 REMARK 3 S31: 0.2025 S32: -0.5603 S33: -0.0633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7ZTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL 0.2M NA ACETATE 10% REMARK 280 GLYCEROL 28% PEG1500, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.90250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 TYR A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 GLN A 150 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 TYR B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 147 REMARK 465 ASP B 148 REMARK 465 GLU B 149 REMARK 465 GLN B 150 REMARK 465 SER C 1 REMARK 465 PRO C 2 REMARK 465 TYR C 3 REMARK 465 GLY C 4 REMARK 465 GLN C 5 REMARK 465 GLY C 147 REMARK 465 ASP C 148 REMARK 465 GLU C 149 REMARK 465 GLN C 150 REMARK 465 SER D 1 REMARK 465 PRO D 2 REMARK 465 TYR D 3 REMARK 465 GLY D 4 REMARK 465 GLN D 5 REMARK 465 GLY D 147 REMARK 465 ASP D 148 REMARK 465 GLU D 149 REMARK 465 GLN D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 103 OG1 THR B 105 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 65 145.53 178.50 REMARK 500 SER B 79 -70.38 -92.60 REMARK 500 ALA B 80 66.12 -101.42 REMARK 500 GLU D 65 167.94 174.51 REMARK 500 SER D 79 -62.67 -91.98 REMARK 500 VAL D 81 -115.05 55.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 127 O REMARK 620 2 THR A 127 OG1 78.1 REMARK 620 3 THR B 127 O 110.1 171.7 REMARK 620 4 THR B 127 OG1 169.6 91.6 80.2 REMARK 620 5 HOH B 227 O 97.6 86.2 93.5 82.6 REMARK 620 6 HOH B 230 O 92.6 78.3 99.9 84.2 159.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 127 O REMARK 620 2 THR C 127 OG1 75.8 REMARK 620 3 THR D 127 O 116.8 167.0 REMARK 620 4 THR D 127 OG1 162.2 86.3 81.0 REMARK 620 5 HOH D 316 O 100.6 80.2 93.8 76.1 REMARK 620 6 HOH D 325 O 94.9 80.4 100.7 81.7 151.3 REMARK 620 N 1 2 3 4 5 DBREF 7ZTW A 4 150 UNP Q66578 POLG_HPE1H 777 923 DBREF 7ZTW B 4 150 UNP Q66578 POLG_HPE1H 777 923 DBREF 7ZTW C 4 150 UNP Q66578 POLG_HPE1H 777 923 DBREF 7ZTW D 4 150 UNP Q66578 POLG_HPE1H 777 923 SEQADV 7ZTW SER A 1 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW PRO A 2 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW TYR A 3 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW MET A 145 UNP Q66578 ILE 918 ENGINEERED MUTATION SEQADV 7ZTW SER B 1 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW PRO B 2 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW TYR B 3 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW MET B 145 UNP Q66578 ILE 918 ENGINEERED MUTATION SEQADV 7ZTW SER C 1 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW PRO C 2 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW TYR C 3 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW MET C 145 UNP Q66578 ILE 918 ENGINEERED MUTATION SEQADV 7ZTW SER D 1 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW PRO D 2 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW TYR D 3 UNP Q66578 EXPRESSION TAG SEQADV 7ZTW MET D 145 UNP Q66578 ILE 918 ENGINEERED MUTATION SEQRES 1 A 150 SER PRO TYR GLY GLN GLN PRO GLN ASN ARG MET MET LYS SEQRES 2 A 150 LEU ALA TYR LEU ASP ARG GLY PHE TYR LYS HIS TYR GLY SEQRES 3 A 150 ILE ILE VAL GLY ASP HIS VAL TYR GLN LEU ASP SER ASP SEQRES 4 A 150 ASP ILE PHE LYS THR ALA LEU THR GLY LYS ALA LYS PHE SEQRES 5 A 150 THR LYS THR LYS LEU THR SER ASP TRP VAL ILE GLU GLU SEQRES 6 A 150 GLU CYS GLU LEU ASP TYR PHE ARG ILE LYS TYR LEU GLU SEQRES 7 A 150 SER ALA VAL ASP SER GLU HIS ILE PHE SER VAL ASP LYS SEQRES 8 A 150 ASN CYS GLU THR ILE ALA LYS ASP ILE PHE GLY THR HIS SEQRES 9 A 150 THR LEU SER GLN HIS GLN ALA ILE GLY LEU VAL GLY THR SEQRES 10 A 150 ILE LEU LEU THR ALA GLY LEU MET SER THR ILE LYS THR SEQRES 11 A 150 PRO VAL ASN ALA VAL THR ILE LYS GLU PHE PHE ASN HIS SEQRES 12 A 150 ALA MET ASP GLY ASP GLU GLN SEQRES 1 B 150 SER PRO TYR GLY GLN GLN PRO GLN ASN ARG MET MET LYS SEQRES 2 B 150 LEU ALA TYR LEU ASP ARG GLY PHE TYR LYS HIS TYR GLY SEQRES 3 B 150 ILE ILE VAL GLY ASP HIS VAL TYR GLN LEU ASP SER ASP SEQRES 4 B 150 ASP ILE PHE LYS THR ALA LEU THR GLY LYS ALA LYS PHE SEQRES 5 B 150 THR LYS THR LYS LEU THR SER ASP TRP VAL ILE GLU GLU SEQRES 6 B 150 GLU CYS GLU LEU ASP TYR PHE ARG ILE LYS TYR LEU GLU SEQRES 7 B 150 SER ALA VAL ASP SER GLU HIS ILE PHE SER VAL ASP LYS SEQRES 8 B 150 ASN CYS GLU THR ILE ALA LYS ASP ILE PHE GLY THR HIS SEQRES 9 B 150 THR LEU SER GLN HIS GLN ALA ILE GLY LEU VAL GLY THR SEQRES 10 B 150 ILE LEU LEU THR ALA GLY LEU MET SER THR ILE LYS THR SEQRES 11 B 150 PRO VAL ASN ALA VAL THR ILE LYS GLU PHE PHE ASN HIS SEQRES 12 B 150 ALA MET ASP GLY ASP GLU GLN SEQRES 1 C 150 SER PRO TYR GLY GLN GLN PRO GLN ASN ARG MET MET LYS SEQRES 2 C 150 LEU ALA TYR LEU ASP ARG GLY PHE TYR LYS HIS TYR GLY SEQRES 3 C 150 ILE ILE VAL GLY ASP HIS VAL TYR GLN LEU ASP SER ASP SEQRES 4 C 150 ASP ILE PHE LYS THR ALA LEU THR GLY LYS ALA LYS PHE SEQRES 5 C 150 THR LYS THR LYS LEU THR SER ASP TRP VAL ILE GLU GLU SEQRES 6 C 150 GLU CYS GLU LEU ASP TYR PHE ARG ILE LYS TYR LEU GLU SEQRES 7 C 150 SER ALA VAL ASP SER GLU HIS ILE PHE SER VAL ASP LYS SEQRES 8 C 150 ASN CYS GLU THR ILE ALA LYS ASP ILE PHE GLY THR HIS SEQRES 9 C 150 THR LEU SER GLN HIS GLN ALA ILE GLY LEU VAL GLY THR SEQRES 10 C 150 ILE LEU LEU THR ALA GLY LEU MET SER THR ILE LYS THR SEQRES 11 C 150 PRO VAL ASN ALA VAL THR ILE LYS GLU PHE PHE ASN HIS SEQRES 12 C 150 ALA MET ASP GLY ASP GLU GLN SEQRES 1 D 150 SER PRO TYR GLY GLN GLN PRO GLN ASN ARG MET MET LYS SEQRES 2 D 150 LEU ALA TYR LEU ASP ARG GLY PHE TYR LYS HIS TYR GLY SEQRES 3 D 150 ILE ILE VAL GLY ASP HIS VAL TYR GLN LEU ASP SER ASP SEQRES 4 D 150 ASP ILE PHE LYS THR ALA LEU THR GLY LYS ALA LYS PHE SEQRES 5 D 150 THR LYS THR LYS LEU THR SER ASP TRP VAL ILE GLU GLU SEQRES 6 D 150 GLU CYS GLU LEU ASP TYR PHE ARG ILE LYS TYR LEU GLU SEQRES 7 D 150 SER ALA VAL ASP SER GLU HIS ILE PHE SER VAL ASP LYS SEQRES 8 D 150 ASN CYS GLU THR ILE ALA LYS ASP ILE PHE GLY THR HIS SEQRES 9 D 150 THR LEU SER GLN HIS GLN ALA ILE GLY LEU VAL GLY THR SEQRES 10 D 150 ILE LEU LEU THR ALA GLY LEU MET SER THR ILE LYS THR SEQRES 11 D 150 PRO VAL ASN ALA VAL THR ILE LYS GLU PHE PHE ASN HIS SEQRES 12 D 150 ALA MET ASP GLY ASP GLU GLN HET NA A 201 1 HET NA C 201 1 HET ACT D 201 4 HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 5 NA 2(NA 1+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 HOH *171(H2 O) HELIX 1 AA1 ASP A 40 GLY A 48 1 9 HELIX 2 AA2 LEU A 69 ALA A 80 1 12 HELIX 3 AA3 THR A 95 GLY A 102 1 8 HELIX 4 AA4 SER A 107 SER A 126 1 20 HELIX 5 AA5 ASN A 133 ASP A 146 1 14 HELIX 6 AA6 ASP B 40 GLY B 48 1 9 HELIX 7 AA7 LEU B 69 ALA B 80 1 12 HELIX 8 AA8 LYS B 91 GLU B 94 5 4 HELIX 9 AA9 THR B 95 GLY B 102 1 8 HELIX 10 AB1 SER B 107 SER B 126 1 20 HELIX 11 AB2 ASN B 133 MET B 145 1 13 HELIX 12 AB3 ASP C 40 GLY C 48 1 9 HELIX 13 AB4 LEU C 69 LEU C 77 1 9 HELIX 14 AB5 THR C 95 GLY C 102 1 8 HELIX 15 AB6 SER C 107 SER C 126 1 20 HELIX 16 AB7 ASN C 133 ASP C 146 1 14 HELIX 17 AB8 ASP D 40 GLY D 48 1 9 HELIX 18 AB9 LEU D 69 ALA D 80 1 12 HELIX 19 AC1 LYS D 91 GLU D 94 5 4 HELIX 20 AC2 THR D 95 GLY D 102 1 8 HELIX 21 AC3 SER D 107 SER D 126 1 20 HELIX 22 AC4 ASN D 133 MET D 145 1 13 SHEET 1 AA1 6 VAL A 62 GLU A 68 0 SHEET 2 AA1 6 MET A 11 ASP A 18 -1 N LEU A 14 O GLU A 64 SHEET 3 AA1 6 LYS A 23 VAL A 29 -1 O ILE A 28 N LYS A 13 SHEET 4 AA1 6 HIS A 32 LEU A 36 -1 O HIS A 32 N VAL A 29 SHEET 5 AA1 6 ALA A 50 LYS A 56 -1 O THR A 55 N VAL A 33 SHEET 6 AA1 6 PHE A 87 VAL A 89 1 O SER A 88 N PHE A 52 SHEET 1 AA2 6 VAL B 62 GLU B 68 0 SHEET 2 AA2 6 MET B 11 ASP B 18 -1 N MET B 12 O CYS B 67 SHEET 3 AA2 6 LYS B 23 VAL B 29 -1 O HIS B 24 N LEU B 17 SHEET 4 AA2 6 HIS B 32 LEU B 36 -1 O TYR B 34 N ILE B 27 SHEET 5 AA2 6 ALA B 50 LYS B 56 -1 O THR B 55 N VAL B 33 SHEET 6 AA2 6 PHE B 87 VAL B 89 1 O SER B 88 N PHE B 52 SHEET 1 AA3 6 VAL C 62 GLU C 68 0 SHEET 2 AA3 6 MET C 11 ASP C 18 -1 N MET C 12 O CYS C 67 SHEET 3 AA3 6 LYS C 23 VAL C 29 -1 O HIS C 24 N LEU C 17 SHEET 4 AA3 6 HIS C 32 LEU C 36 -1 O TYR C 34 N ILE C 27 SHEET 5 AA3 6 ALA C 50 LYS C 56 -1 O THR C 53 N GLN C 35 SHEET 6 AA3 6 PHE C 87 VAL C 89 1 O SER C 88 N PHE C 52 SHEET 1 AA4 6 VAL D 62 GLU D 68 0 SHEET 2 AA4 6 MET D 11 ASP D 18 -1 N MET D 12 O CYS D 67 SHEET 3 AA4 6 LYS D 23 VAL D 29 -1 O ILE D 28 N LYS D 13 SHEET 4 AA4 6 HIS D 32 LEU D 36 -1 O HIS D 32 N VAL D 29 SHEET 5 AA4 6 ALA D 50 LYS D 56 -1 O THR D 55 N VAL D 33 SHEET 6 AA4 6 PHE D 87 VAL D 89 1 O SER D 88 N PHE D 52 LINK O THR A 127 NA NA A 201 1555 1555 2.35 LINK OG1 THR A 127 NA NA A 201 1555 1555 2.40 LINK NA NA A 201 O THR B 127 1555 1555 2.27 LINK NA NA A 201 OG1 THR B 127 1555 1555 2.34 LINK NA NA A 201 O HOH B 227 1555 1555 2.34 LINK NA NA A 201 O HOH B 230 1555 1555 2.40 LINK O THR C 127 NA NA C 201 1555 1555 2.28 LINK OG1 THR C 127 NA NA C 201 1555 1555 2.38 LINK NA NA C 201 O THR D 127 1555 1555 2.22 LINK NA NA C 201 OG1 THR D 127 1555 1555 2.40 LINK NA NA C 201 O HOH D 316 1555 1555 2.47 LINK NA NA C 201 O HOH D 325 1555 1555 2.38 CRYST1 42.548 127.805 54.282 90.00 95.19 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023503 0.000000 0.002135 0.00000 SCALE2 0.000000 0.007824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018498 0.00000