HEADER VIRAL PROTEIN 12-MAY-22 7ZUD TITLE CRYSTAL STRUCTURE OF HIV-1 CAPSID IP6-CPSF6 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6; COMPND 8 CHAIN: M; COMPND 9 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 68 KDA COMPND 10 SUBUNIT,CPSF 68 KDA SUBUNIT,CLEAVAGE FACTOR IM COMPLEX 68 KDA COMPND 11 SUBUNIT,CFIM68,PRE-MRNA CLEAVAGE FACTOR IM 68 KDA SUBUNIT,PROTEIN COMPND 12 HPBRII-4/7; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: ISOLATE NY5; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS COMPLEX, COFACTOR, HOST-FACTOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.NICASTRO,I.A.TAYLOR REVDAT 2 31-JAN-24 7ZUD 1 REMARK REVDAT 1 27-JUL-22 7ZUD 0 JRNL AUTH G.NICASTRO,M.LUCCI,A.OREGIONI,G.KELLY,T.A.FRENKIEL, JRNL AUTH 2 I.A.TAYLOR JRNL TITL CP-MAS AND SOLUTION NMR STUDIES OF ALLOSTERIC COMMUNICATION JRNL TITL 2 IN CA-ASSEMBLIES OF HIV-1. JRNL REF J.MOL.BIOL. V. 434 67691 2022 JRNL REFN ESSN 1089-8638 JRNL PMID 35738429 JRNL DOI 10.1016/J.JMB.2022.167691 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.PORNILLOS,B.K.GANSER-PORNILLOS,B.N.KELLY,Y.HUA,F.G.WHITBY, REMARK 1 AUTH 2 C.D.STOUT,W.I.SUNDQUIST,C.P.HILL,M.YEAGER REMARK 1 TITL X-RAY STRUCTURES OF THE HEXAMERIC BUILDING BLOCK OF THE HIV REMARK 1 TITL 2 CAPSID. REMARK 1 REF CELL V. 137 1282 2009 REMARK 1 REFN ISSN 1097-4172 REMARK 1 DOI 10.1016/J.CELL.2009.04.063 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.BHATTACHARYA,S.L.ALAM,T.FRICKE,K.ZADROZNY,J.SEDZICKI, REMARK 1 AUTH 2 A.B.TAYLOR,B.DEMELER,O.PORNILLOS,B.K.GANSER-PORNILLOS, REMARK 1 AUTH 3 F.DIAZ-GRIFFERO,D.N.IVANOV,M.YEAGER REMARK 1 TITL STRUCTURAL BASIS OF HIV-1 CAPSID RECOGNITION BY PF74 AND REMARK 1 TITL 2 CPSF6. REMARK 1 REF PROC NATL ACAD SCI U S A V. 111 18625 2014 REMARK 1 REFN ESSN 1091-6490 REMARK 1 DOI 10.1073/PNAS.1419945112 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.J.PRICE,D.A.JACQUES,W.A.MCEWAN,A.J.FLETCHER,S.ESSIG, REMARK 1 AUTH 2 J.W.CHIN,U.D.HALAMBAGE,C.AIKEN,L.C.JAMES REMARK 1 TITL HOST COFACTORS AND PHARMACOLOGIC LIGANDS SHARE AN ESSENTIAL REMARK 1 TITL 2 INTERFACE IN HIV-1 CAPSID THAT IS LOST UPON DISASSEMBLY. REMARK 1 REF PLOS PATHOG V. 10 04459 2014 REMARK 1 REFN ESSN 1553-7374 REMARK 1 DOI 10.1371/JOURNAL.PPAT.1004459 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.A.DICK,K.K.ZADROZNY,C.XU,F.K.M.SCHUR,T.D.LYDDON, REMARK 1 AUTH 2 C.L.RICANA,J.M.WAGNER,J.R.PERILLA,B.K.GANSER-PORNILLOS, REMARK 1 AUTH 3 M.C.JOHNSON,O.PORNILLOS,V.M.VOGT REMARK 1 TITL INOSITOL PHOSPHATES ARE ASSEMBLY CO-FACTORS FOR HIV-1. REMARK 1 REF NATURE V. 560 509 2018 REMARK 1 REFN ESSN 1476-4687 REMARK 1 DOI 10.1038/S41586-018-0396-4 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 5698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.970 REMARK 3 FREE R VALUE TEST SET COUNT : 511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.6600 - 3.7000 1.00 1329 128 0.2637 0.3378 REMARK 3 2 3.6900 - 3.2300 1.00 1295 130 0.2654 0.3645 REMARK 3 3 3.2300 - 3.0300 0.99 1324 153 0.2815 0.3276 REMARK 3 4 3.0300 - 2.9300 0.93 1239 100 0.3268 0.3726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.521 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.819 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1886 REMARK 3 ANGLE : 0.740 2615 REMARK 3 CHIRALITY : 0.092 288 REMARK 3 PLANARITY : 0.009 314 REMARK 3 DIHEDRAL : 35.644 357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 67.2311 88.3321 11.0531 REMARK 3 T TENSOR REMARK 3 T11: 0.1950 T22: 0.1619 REMARK 3 T33: 0.4598 T12: -0.0359 REMARK 3 T13: -0.0447 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.7456 L22: 0.7080 REMARK 3 L33: 1.8309 L12: -0.5557 REMARK 3 L13: 0.8021 L23: -1.1893 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.2480 S13: -0.0078 REMARK 3 S21: -0.2002 S22: -0.0882 S23: -0.0573 REMARK 3 S31: -0.0421 S32: 0.1849 S33: 0.0470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9688 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5698 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 78.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3H47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M CALCIUM CHLORIDE DIHYDRATE, 0.3 M REMARK 280 MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1 M TRIS HYDROCHLORIDE PH 8.5, REMARK 280 0.1 M BICINE, 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -352.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 136.11150 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 78.58401 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 157.16802 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 90.74100 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 157.16802 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 -45.37050 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 78.58401 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 90.74100 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P4 IHP A 501 LIES ON A SPECIAL POSITION. REMARK 375 C6 IHP A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 177 REMARK 465 SER A 178 REMARK 465 GLN A 179 REMARK 465 GLU A 180 REMARK 465 VAL A 181 REMARK 465 LYS A 182 REMARK 465 ASN A 183 REMARK 465 ALA A 184 REMARK 465 ALA A 185 REMARK 465 GLY A 220 REMARK 465 VAL A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 GLU A 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 VAL A 11 CG1 CG2 REMARK 470 VAL A 36 CG1 CG2 REMARK 470 VAL A 86 CG1 CG2 REMARK 470 HIS A 87 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 91 CG1 CG2 CD1 REMARK 470 ASN A 121 CG OD1 ND2 REMARK 470 LEU A 136 CG CD1 CD2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 203 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 18 O41 IHP A 502 1.30 REMARK 500 NH1 ARG A 18 O36 IHP A 502 1.30 REMARK 500 NH1 ARG A 18 P1 IHP A 502 1.80 REMARK 500 CZ ARG A 18 O36 IHP A 502 1.87 REMARK 500 O PHE A 40 OG SER A 44 2.03 REMARK 500 O LYS A 70 ND2 ASN A 74 2.06 REMARK 500 O HIS A 84 NH1 ARG A 100 2.09 REMARK 500 OD1 ASP A 103 OG1 THR A 108 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 18 O26 IHP A 502 3675 1.28 REMARK 500 NH1 ARG A 18 O23 IHP A 502 2765 1.30 REMARK 500 NH1 ARG A 18 O23 IHP A 502 3675 1.30 REMARK 500 NE ARG A 18 O21 IHP A 502 6655 1.31 REMARK 500 NH1 ARG A 18 O12 IHP A 502 6655 1.31 REMARK 500 NH1 ARG A 18 O25 IHP A 502 5565 1.31 REMARK 500 NH2 ARG A 18 O36 IHP A 502 4775 1.32 REMARK 500 CD ARG A 18 O21 IHP A 502 6655 1.36 REMARK 500 CZ ARG A 18 O33 IHP A 502 4775 1.37 REMARK 500 CZ ARG A 18 O21 IHP A 502 5565 1.37 REMARK 500 CD ARG A 18 O42 IHP A 502 2765 1.39 REMARK 500 NH1 ARG A 18 O33 IHP A 502 4775 1.40 REMARK 500 CZ ARG A 18 O26 IHP A 502 3675 1.69 REMARK 500 NE ARG A 18 O42 IHP A 502 2765 1.75 REMARK 500 NE ARG A 18 O21 IHP A 502 5565 1.75 REMARK 500 NE ARG A 18 O33 IHP A 502 4775 1.76 REMARK 500 NH1 ARG A 18 P6 IHP A 502 3675 1.85 REMARK 500 NH1 ARG A 18 O21 IHP A 502 5565 1.88 REMARK 500 CZ ARG A 18 O21 IHP A 502 6655 1.89 REMARK 500 NH2 ARG A 18 O21 IHP A 502 5565 1.91 REMARK 500 CZ ARG A 18 O25 IHP A 502 5565 1.95 REMARK 500 NH1 ARG A 18 P2 IHP A 502 6655 1.95 REMARK 500 NH1 ARG A 18 O11 IHP A 502 2765 1.95 REMARK 500 NH1 ARG A 18 O42 IHP A 502 6655 2.06 REMARK 500 NH1 ARG A 18 O36 IHP A 502 3675 2.09 REMARK 500 CZ ARG A 18 O36 IHP A 502 4775 2.10 REMARK 500 CZ ARG A 18 O12 IHP A 502 6655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -122.19 57.18 REMARK 500 ALA A 88 -113.25 -109.12 REMARK 500 GLU A 187 -58.94 -162.33 REMARK 500 CYS A 198 -50.60 70.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZUD A 1 231 UNP P12497 POL_HV1N5 133 363 DBREF 7ZUD M 313 325 UNP Q16630 CPSF6_HUMAN 276 288 SEQADV 7ZUD CYS A 14 UNP P12497 ALA 146 ENGINEERED MUTATION SEQADV 7ZUD CYS A 45 UNP P12497 GLU 177 ENGINEERED MUTATION SEQADV 7ZUD ALA A 184 UNP P12497 TRP 316 ENGINEERED MUTATION SEQADV 7ZUD ALA A 185 UNP P12497 MET 317 ENGINEERED MUTATION SEQADV 7ZUD LEU A 232 UNP P12497 EXPRESSION TAG SEQADV 7ZUD GLU A 233 UNP P12497 EXPRESSION TAG SEQRES 1 A 233 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 233 CYS ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 233 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 233 PHE SER ALA LEU SER CYS GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 233 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 233 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 233 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 233 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 233 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 233 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 233 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 233 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 233 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 233 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 233 ASN ALA ALA THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 233 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 233 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 233 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU LEU GLU SEQRES 1 M 13 PRO VAL LEU PHE PRO GLY GLN PRO PHE GLY GLN PRO PRO HET IHP A 501 72 HET IHP A 502 72 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP 2(C6 H18 O24 P6) FORMUL 5 HOH *6(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 VAL A 59 1 12 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 PRO A 160 GLU A 175 1 16 HELIX 9 AA9 GLU A 187 ASN A 193 1 7 HELIX 10 AB1 ASN A 195 GLY A 206 1 12 HELIX 11 AB2 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 GLN A 4 0 SHEET 2 AA1 2 MET A 10 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.03 CISPEP 1 ASN A 121 PRO A 122 0 -2.68 CRYST1 90.741 90.741 56.588 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011020 0.006363 0.000000 0.00000 SCALE2 0.000000 0.012725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017672 0.00000