data_7ZUR # _entry.id 7ZUR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7ZUR pdb_00007zur 10.2210/pdb7zur/pdb WWPDB D_1292122842 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-12-07 2 'Structure model' 1 1 2023-11-22 3 'Structure model' 1 2 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_related_exp_data_set 4 3 'Structure model' pdbx_initial_refinement_model # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7ZUR _pdbx_database_status.recvd_initial_deposition_date 2022-05-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 6S15 _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 carla.bazzicalupi@unifi.it Carla Bazzicalupi ? 'principal investigator/group leader' 0000-0003-4602-0405 3 marta.ferraroni@unifi.it Marta Ferraroni ? 'principal investigator/group leader' 0000-0001-7258-738X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bazzicalupi, C.' 1 ? 'Ferraroni, M.' 2 ? 'Gratteri, P.' 3 ? 'Papi, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country CH _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Int J Mol Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1422-0067 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Probing the Efficiency of 13-Pyridylalkyl Berberine Derivatives to Human Telomeric G-Quadruplexes Binding: Spectroscopic, Solid State and In Silico Analysis. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.3390/ijms232214061 _citation.pdbx_database_id_PubMed 36430540 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bazzicalupi, C.' 1 0000-0003-4602-0405 primary 'Bonardi, A.' 2 0000-0002-5520-740X primary 'Biver, T.' 3 0000-0001-8512-8422 primary 'Ferraroni, M.' 4 0000-0001-7258-738X primary 'Papi, F.' 5 ? primary 'Savastano, M.' 6 0000-0002-9780-7542 primary 'Lombardi, P.' 7 0000-0002-7971-7404 primary 'Gratteri, P.' 8 0000-0002-9137-2509 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA TAGGGTTAGGGT' 3773.462 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 3 non-polymer syn ;16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene ; 469.552 1 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TAGGGTTAGGGT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 ;16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene ; K0F 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DA n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 K0F non-polymer . ;16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene ; Berberine 'C29 H29 N2 O4 1' 469.552 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DT 12 12 12 DT DT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K A . C 2 K 1 102 2 K K A . D 3 K0F 1 103 1 K0F NSS A . E 4 HOH 1 201 2 HOH HOH A . E 4 HOH 2 202 1 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DT 1 ? "O5'" ? A DT 1 "O5'" 2 1 Y 0 A DT 6 ? N1 ? A DT 6 N1 3 1 Y 0 A DT 6 ? C2 ? A DT 6 C2 4 1 Y 0 A DT 6 ? O2 ? A DT 6 O2 5 1 Y 0 A DT 6 ? N3 ? A DT 6 N3 6 1 Y 0 A DT 6 ? C4 ? A DT 6 C4 7 1 Y 0 A DT 6 ? O4 ? A DT 6 O4 8 1 Y 0 A DT 6 ? C5 ? A DT 6 C5 9 1 Y 0 A DT 6 ? C7 ? A DT 6 C7 10 1 Y 0 A DT 6 ? C6 ? A DT 6 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0151 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7ZUR _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.100 _cell.length_a_esd ? _cell.length_b 42.100 _cell.length_b_esd ? _cell.length_c 34.150 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7ZUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7ZUR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 0.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Kcacodylate, Li2SO4, PEG400' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97264 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID30B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97264 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID30B _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 51.743 _reflns.entry_id 7ZUR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.490 _reflns.d_resolution_low 29.770 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5252 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.697 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.077 _reflns.pdbx_scaling_rejects 29 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.065 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 56180 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.490 1.580 ? ? ? ? ? ? 771 93.90 ? ? ? ? ? ? ? ? ? ? ? ? ? 6.2 ? ? ? ? ? ? ? 1 1 0.453 ? ? ? ? ? ? ? ? ? ? 1.58 1.69 ? ? ? ? ? ? 798 100.0 ? ? ? ? ? ? ? ? ? ? ? ? ? 10.3 ? ? ? ? ? ? ? 2 1 0.935 ? ? ? ? ? ? ? ? ? ? 1.69 1.82 ? ? ? ? ? ? 744 99.9 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.0 ? ? ? ? ? ? ? 3 1 0.999 ? ? ? ? ? ? ? ? ? ? 1.82 2.00 ? ? ? ? ? ? 682 100.0 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.1 ? ? ? ? ? ? ? 4 1 0.988 ? ? ? ? ? ? ? ? ? ? 2.00 2.23 ? ? ? ? ? ? 627 100.0 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.3 ? ? ? ? ? ? ? 5 1 0.994 ? ? ? ? ? ? ? ? ? ? 2.23 2.58 ? ? ? ? ? ? 563 100.0 ? ? ? ? ? ? ? ? ? ? ? ? ? 12.1 ? ? ? ? ? ? ? 6 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.58 3.15 ? ? ? ? ? ? 484 99.8 ? ? ? ? ? ? ? ? ? ? ? ? ? 11.3 ? ? ? ? ? ? ? 7 1 0.998 ? ? ? ? ? ? ? ? ? ? 3.15 4.43 ? ? ? ? ? ? 388 99.5 ? ? ? ? ? ? ? ? ? ? ? ? ? 10.7 ? ? ? ? ? ? ? 8 1 0.997 ? ? ? ? ? ? ? ? ? ? 4.43 10.697 ? ? ? ? ? ? 246 99.6 ? ? ? ? ? ? ? ? ? ? ? ? ? 9.4 ? ? ? ? ? ? ? 9 1 0.998 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] 3.4000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][2] 3.4000 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -6.7900 _refine.B_iso_max 185.830 _refine.B_iso_mean 78.8650 _refine.B_iso_min 41.650 _refine.correlation_coeff_Fo_to_Fc 0.9800 _refine.correlation_coeff_Fo_to_Fc_free 0.9610 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7ZUR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6000 _refine.ls_d_res_low 29.7700 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 3925 _refine.ls_number_reflns_R_free 418 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.2500 _refine.ls_percent_reflns_R_free 9.6000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2845 _refine.ls_R_factor_R_free 0.3099 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2816 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5CDB _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1550 _refine.pdbx_overall_ESU_R_Free 0.1420 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 10.7150 _refine.overall_SU_ML 0.2960 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.6000 _refine_hist.d_res_low 29.7700 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 318 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 12 _refine_hist.pdbx_B_iso_mean_ligand 56.05 _refine_hist.pdbx_B_iso_mean_solvent 70.24 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 250 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 0.011 336 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.018 170 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.241 1.177 517 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.819 3.000 400 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.087 0.200 38 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.014 0.020 332 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 69 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.6000 _refine_ls_shell.d_res_low 1.6410 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_R_work 278 _refine_ls_shell.percent_reflns_obs 99.0400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 1.0 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.9660 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7ZUR _struct.title 'Four carbons pendant pyridine derivative of the natural alkaloid Berberine as Human Telomeric G-quadruplex Binder' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7ZUR _struct_keywords.text 'DRUG-DNA COMPLEX, telomeric G-quadruplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7ZUR _struct_ref.pdbx_db_accession 7ZUR _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7ZUR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7ZUR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E 1 2 A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -42.1000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 1_555 ? ? ? ? ? ? ? 3.027 ? ? metalc2 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 101 2_545 ? ? ? ? ? ? ? 2.747 ? ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 3.127 ? ? metalc4 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 101 2_545 ? ? ? ? ? ? ? 2.492 ? ? metalc5 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 3.308 ? ? metalc6 metalc ? ? A DG 4 O6 ? ? ? 1_555 C K . K ? ? A DG 4 A K 102 2_545 ? ? ? ? ? ? ? 2.485 ? ? metalc7 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 3.016 ? ? metalc8 metalc ? ? A DG 5 O6 ? ? ? 1_555 C K . K ? ? A DG 5 A K 102 2_545 ? ? ? ? ? ? ? 2.435 ? ? metalc9 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 1_555 ? ? ? ? ? ? ? 2.995 ? ? metalc10 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 101 2_545 ? ? ? ? ? ? ? 2.293 ? ? metalc11 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 1_555 ? ? ? ? ? ? ? 3.083 ? ? metalc12 metalc ? ? A DG 10 O6 ? ? ? 1_555 B K . K ? ? A DG 10 A K 101 2_545 ? ? ? ? ? ? ? 2.678 ? ? metalc13 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc14 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 102 2_545 ? ? ? ? ? ? ? 3.177 ? ? metalc15 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 102 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc16 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 102 2_545 ? ? ? ? ? ? ? 3.103 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 2 N1 ? ? A DT 1 A DA 2 2_545 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A DT 1 O2 ? ? ? 1_555 A DA 2 N6 ? ? A DT 1 A DA 2 2_545 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 A DT 1 N3 ? ? A DA 2 A DT 1 2_545 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 A DT 1 O2 ? ? A DA 2 A DT 1 2_545 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 3 A DG 9 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 3 A DG 9 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 4 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 4 A DG 10 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 4 A DG 10 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 5 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 5 A DG 11 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 5 A DG 11 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 3 O6 ? ? A DG 9 A DG 3 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 3 N7 ? ? A DG 9 A DG 3 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 4 O6 ? ? A DG 10 A DG 4 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 4 N7 ? ? A DG 10 A DG 4 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 5 O6 ? ? A DG 11 A DG 5 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 5 N7 ? ? A DG 11 A DG 5 2_545 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 0.0 ? 2 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 67.5 ? 3 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 67.5 ? 4 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 67.5 ? 5 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 67.5 ? 6 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 0.0 ? 7 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 73.0 ? 8 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 73.0 ? 9 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.8 ? 10 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.8 ? 11 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 73.0 ? 12 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 73.0 ? 13 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.8 ? 14 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.8 ? 15 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 0.0 ? 16 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 120.6 ? 17 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 120.6 ? 18 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 64.1 ? 19 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 64.1 ? 20 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.4 ? 21 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.4 ? 22 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 120.6 ? 23 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 120.6 ? 24 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 64.1 ? 25 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 64.1 ? 26 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.4 ? 27 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.4 ? 28 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? B K . ? A K 101 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 0.0 ? 29 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 0.0 ? 30 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 63.6 ? 31 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 63.6 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 63.6 ? 33 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 63.6 ? 34 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 0.0 ? 35 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.6 ? 36 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.6 ? 37 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 88.3 ? 38 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 88.3 ? 39 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.6 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 65.6 ? 41 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 88.3 ? 42 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 88.3 ? 43 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 0.0 ? 44 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 123.5 ? 45 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 123.5 ? 46 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 71.3 ? 47 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 71.3 ? 48 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 81.5 ? 49 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 81.5 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 123.5 ? 51 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 123.5 ? 52 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 71.3 ? 53 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 71.3 ? 54 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 81.5 ? 55 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 81.5 ? 56 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 102 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 0.0 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O6 A DG 3 ? ? 1_555 H1 A DG 9 ? ? 2_545 1.51 2 1 O2 A DT 6 ? ? 1_555 O2 A DT 12 ? ? 5_554 1.63 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DA _pdbx_validate_rmsd_angle.auth_seq_id_1 8 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 "C2'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DA _pdbx_validate_rmsd_angle.auth_seq_id_2 8 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DA _pdbx_validate_rmsd_angle.auth_seq_id_3 8 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 97.32 _pdbx_validate_rmsd_angle.angle_target_value 102.40 _pdbx_validate_rmsd_angle.angle_deviation -5.08 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.80 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id K0F _pdbx_struct_special_symmetry.auth_seq_id 103 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id K0F _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 7ZUR _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 HOH O O N N 110 HOH H1 H N N 111 HOH H2 H N N 112 K K K N N 113 K0F C4 C N N 114 K0F C2 C N N 115 K0F N1 N Y N 116 K0F C6 C Y N 117 K0F C5 C Y N 118 K0F C8 C Y N 119 K0F C1 C N N 120 K0F C3 C N N 121 K0F N2 N Y N 122 K0F C7 C Y N 123 K0F C9 C Y N 124 K0F O6 O N N 125 K0F O7 O N N 126 K0F O8 O N N 127 K0F O9 O N N 128 K0F C16 C N N 129 K0F C17 C N N 130 K0F C18 C Y N 131 K0F C19 C Y N 132 K0F C20 C Y N 133 K0F C21 C Y N 134 K0F C22 C Y N 135 K0F C23 C Y N 136 K0F C24 C Y N 137 K0F C25 C Y N 138 K0F C26 C Y N 139 K0F C27 C N N 140 K0F C28 C N N 141 K0F C29 C Y N 142 K0F C30 C Y N 143 K0F C31 C Y N 144 K0F C32 C Y N 145 K0F C33 C Y N 146 K0F C34 C Y N 147 K0F C35 C N N 148 K0F H7 H N N 149 K0F H8 H N N 150 K0F H3 H N N 151 K0F H4 H N N 152 K0F H10 H N N 153 K0F H9 H N N 154 K0F H29 H N N 155 K0F H2 H N N 156 K0F H1 H N N 157 K0F H6 H N N 158 K0F H5 H N N 159 K0F H30 H N N 160 K0F H12 H N N 161 K0F H11 H N N 162 K0F H13 H N N 163 K0F H15 H N N 164 K0F H14 H N N 165 K0F H16 H N N 166 K0F H17 H N N 167 K0F H18 H N N 168 K0F H19 H N N 169 K0F H21 H N N 170 K0F H22 H N N 171 K0F H23 H N N 172 K0F H24 H N N 173 K0F H25 H N N 174 K0F H26 H N N 175 K0F H27 H N N 176 K0F H28 H N N 177 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 HOH O H1 sing N N 115 HOH O H2 sing N N 116 K0F C4 C3 sing N N 117 K0F C4 C7 sing N N 118 K0F C2 C1 sing N N 119 K0F C2 C3 sing N N 120 K0F N1 C24 doub Y N 121 K0F N1 C25 sing Y N 122 K0F N1 C27 sing N N 123 K0F C6 C5 doub Y N 124 K0F C6 C7 sing Y N 125 K0F C5 N2 sing Y N 126 K0F C8 C7 doub Y N 127 K0F C8 C9 sing Y N 128 K0F C1 C26 sing N N 129 K0F N2 C9 doub Y N 130 K0F O6 C16 sing N N 131 K0F O6 C18 sing N N 132 K0F O7 C17 sing N N 133 K0F O7 C20 sing N N 134 K0F O8 C34 sing N N 135 K0F O8 C35 sing N N 136 K0F O9 C33 sing N N 137 K0F O9 C35 sing N N 138 K0F C18 C19 doub Y N 139 K0F C18 C20 sing Y N 140 K0F C19 C21 sing Y N 141 K0F C20 C23 doub Y N 142 K0F C21 C22 doub Y N 143 K0F C22 C23 sing Y N 144 K0F C22 C26 sing Y N 145 K0F C23 C24 sing Y N 146 K0F C25 C26 doub Y N 147 K0F C25 C30 sing N N 148 K0F C27 C28 sing N N 149 K0F C28 C29 sing N N 150 K0F C29 C30 doub Y N 151 K0F C29 C32 sing Y N 152 K0F C30 C31 sing Y N 153 K0F C31 C34 doub Y N 154 K0F C32 C33 doub Y N 155 K0F C33 C34 sing Y N 156 K0F C4 H7 sing N N 157 K0F C4 H8 sing N N 158 K0F C2 H3 sing N N 159 K0F C2 H4 sing N N 160 K0F C6 H10 sing N N 161 K0F C5 H9 sing N N 162 K0F C8 H29 sing N N 163 K0F C1 H2 sing N N 164 K0F C1 H1 sing N N 165 K0F C3 H6 sing N N 166 K0F C3 H5 sing N N 167 K0F C9 H30 sing N N 168 K0F C16 H12 sing N N 169 K0F C16 H11 sing N N 170 K0F C16 H13 sing N N 171 K0F C17 H15 sing N N 172 K0F C17 H14 sing N N 173 K0F C17 H16 sing N N 174 K0F C19 H17 sing N N 175 K0F C21 H18 sing N N 176 K0F C24 H19 sing N N 177 K0F C27 H21 sing N N 178 K0F C27 H22 sing N N 179 K0F C28 H23 sing N N 180 K0F C28 H24 sing N N 181 K0F C31 H25 sing N N 182 K0F C32 H26 sing N N 183 K0F C35 H27 sing N N 184 K0F C35 H28 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7ZUR 'double helix' 7ZUR 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 9 1_555 1.934 3.579 -0.146 1.580 -2.336 -87.296 1 A_DG3:DG9_A A 3 ? A 9 ? 6 3 1 A DG 4 1_555 A DG 10 1_555 1.650 3.529 -0.192 5.899 -7.463 -90.483 2 A_DG4:DG10_A A 4 ? A 10 ? 6 3 1 A DG 5 1_555 A DG 11 1_555 1.570 3.393 -0.414 7.743 -15.107 -89.197 3 A_DG5:DG11_A A 5 ? A 11 ? 6 3 1 A DT 1 1_555 A DA 2 2_545 -0.036 -0.118 0.298 -12.727 9.707 -177.910 4 A_DT1:DA2_A A 1 ? A 2 ? 21 2 1 A DG 9 1_555 A DG 3 2_545 1.468 3.090 -0.086 -1.709 -5.134 -92.623 5 A_DG9:DG3_A A 9 ? A 3 ? 6 3 1 A DG 3 1_555 A DG 9 2_545 -1.468 -3.090 0.086 1.709 5.134 92.623 6 A_DG3:DG9_A A 3 ? A 9 ? 6 3 1 A DT 1 2_545 A DA 2 1_555 -0.036 -0.118 0.298 -12.727 9.707 -177.910 7 A_DT1:DA2_A A 1 ? A 2 ? 21 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 9 1_555 A DG 4 1_555 A DG 10 1_555 -0.528 -0.732 3.276 -1.395 2.871 28.527 -2.120 0.753 3.210 5.802 2.820 28.701 1 AA_DG3DG4:DG10DG9_AA A 3 ? A 9 ? A 4 ? A 10 ? 1 A DG 4 1_555 A DG 10 1_555 A DG 5 1_555 A DG 11 1_555 -0.485 -0.478 3.086 3.280 3.161 26.564 -1.774 1.819 2.930 6.815 -7.072 26.945 2 AA_DG4DG5:DG11DG10_AA A 4 ? A 10 ? A 5 ? A 11 ? 1 A DT 1 1_555 A DA 2 2_545 A DG 9 1_555 A DG 3 2_545 -0.204 1.954 3.097 4.071 -4.380 80.930 1.607 0.254 2.995 -3.370 -3.132 81.112 3 AA_DT1DG9:DG3DA2_AA A 1 ? A 2 ? A 9 ? A 3 ? 1 A DG 9 1_555 A DG 3 2_545 A DG 3 1_555 A DG 9 2_545 -1.935 -3.581 0.000 -1.580 2.338 180.000 -1.791 0.967 0.000 1.169 0.790 180.000 4 AA_DG9DG3:DG9DG3_AA A 9 ? A 3 ? A 3 ? A 9 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other private' Italy 'ISP B/2021/0168' 1 'Other private' Italy 'ECR 23942_2019' 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id K0F _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id K0F _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5CDB _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7ZUR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.023753 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029283 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H K N O P # loop_