HEADER LIPID BINDING PROTEIN 16-MAY-22 7ZVN TITLE CRYSTAL STRUCTURE OF HUMAN ANNEXIN A2 IN COMPLEX WITH FULL TITLE 2 PHOSPHOROTHIOATE 5-10 2'-METHOXYETHYL DNA GAPMER ANTISENSE TITLE 3 OLIGONUCLEOTIDE SOLVED AT 1.87 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANNEXIN A2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANNEXIN II,ANNEXIN-2,CALPACTIN I HEAVY CHAIN,CALPACTIN-1 COMPND 5 HEAVY CHAIN,CHROMOBINDIN-8,LIPOCORTIN II,PLACENTAL ANTICOAGULANT COMPND 6 PROTEIN IV,PAP-IV,PROTEIN I,P36; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: FIRST RESIDUE DERIVED FROM THE EXPRESSION CONSTRUCT; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 2'-METHOXYETHYL DNA GAPMER ANTISENSE OLIGONUCLEOTIDE; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: (K39)(N7X)(N7X)(K2F)(K39)(GS)(OKN)(PST)(GS)(GS)(PST) COMPND 14 (PST)(AS)(PST)(GS) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANXA2, ANX2, ANX2L4, CAL1H, LPC2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28_HISSUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS NUCLEIC ACID BINDING, ASO, ANTISENSE OLIGONUCLEOTIDE, KEYWDS 2 PHOSPHOROTHIOATE, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HYJEK-SKLADANOWSKA,B.ANDERSON,V.MYKHAYLYK,C.ORR,A.WAGNER, AUTHOR 2 K.SKOWRONEK,P.SETH,M.NOWOTNY REVDAT 4 07-FEB-24 7ZVN 1 REMARK REVDAT 3 01-MAR-23 7ZVN 1 JRNL REVDAT 2 05-OCT-22 7ZVN 1 JRNL REVDAT 1 14-SEP-22 7ZVN 0 JRNL AUTH M.HYJEK-SKLADANOWSKA,B.A.ANDERSON,V.MYKHAYLYK,C.ORR, JRNL AUTH 2 A.WAGNER,J.T.POZNANSKI,K.SKOWRONEK,P.SETH,M.NOWOTNY JRNL TITL STRUCTURES OF ANNEXIN A2-PS DNA COMPLEXES SHOW DOMINANCE OF JRNL TITL 2 HYDROPHOBIC INTERACTIONS IN PHOSPHOROTHIOATE BINDING. JRNL REF NUCLEIC ACIDS RES. V. 51 1409 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36124719 JRNL DOI 10.1093/NAR/GKAC774 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.470 REMARK 3 FREE R VALUE TEST SET COUNT : 2010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7500 - 4.5100 0.99 2544 154 0.1761 0.1744 REMARK 3 2 4.5100 - 3.5800 1.00 2512 138 0.1350 0.1562 REMARK 3 3 3.5800 - 3.1300 1.00 2500 135 0.1508 0.1823 REMARK 3 4 3.1300 - 2.8400 1.00 2493 144 0.1623 0.2067 REMARK 3 5 2.8400 - 2.6400 1.00 2483 145 0.1633 0.2109 REMARK 3 6 2.6400 - 2.4800 1.00 2478 142 0.1637 0.2008 REMARK 3 7 2.4800 - 2.3600 1.00 2457 146 0.1604 0.2076 REMARK 3 8 2.3600 - 2.2600 1.00 2506 150 0.1628 0.2066 REMARK 3 9 2.2600 - 2.1700 1.00 2459 133 0.1773 0.2255 REMARK 3 10 2.1700 - 2.1000 1.00 2472 154 0.1759 0.2170 REMARK 3 11 2.1000 - 2.0300 1.00 2456 146 0.1857 0.2310 REMARK 3 12 2.0300 - 1.9700 1.00 2460 133 0.2024 0.2858 REMARK 3 13 1.9700 - 1.9200 1.00 2460 153 0.2523 0.2979 REMARK 3 14 1.9200 - 1.8700 0.98 2428 137 0.3369 0.3872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.902 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3497 REMARK 3 ANGLE : 1.026 4772 REMARK 3 CHIRALITY : 0.055 510 REMARK 3 PLANARITY : 0.008 956 REMARK 3 DIHEDRAL : 8.753 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZVN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS V3 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36723 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 43.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% W/V PEG 4000, 14% V/V GLYCEROL, REMARK 280 0.03 M MGCL2/CACL2, 0.1 M BICINE/TRIZMA BASE PH 8.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.75100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PST C 11 REMARK 465 PST C 12 REMARK 465 AS C 13 REMARK 465 PST C 14 REMARK 465 GS C 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 80 CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 GLU A 82 CD OE1 OE2 REMARK 470 LYS A 88 CE NZ REMARK 470 LYS A 119 CE NZ REMARK 470 LYS A 157 CE NZ REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 ARG A 309 CZ NH1 NH2 REMARK 470 K39 C 1 SP1 REMARK 470 K39 D 1 SP1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 503 O HOH A 681 1.92 REMARK 500 O HOH A 539 O HOH A 574 2.03 REMARK 500 O HOH A 740 O HOH A 780 2.07 REMARK 500 O HOH A 595 O HOH A 722 2.07 REMARK 500 OH TYR A 318 O HOH A 501 2.10 REMARK 500 OD2 ASP A 230 O HOH A 502 2.10 REMARK 500 O HOH A 508 O HOH A 764 2.12 REMARK 500 O HOH A 712 O HOH A 754 2.14 REMARK 500 O HOH A 691 O HOH A 722 2.15 REMARK 500 O HOH C 111 O HOH C 112 2.16 REMARK 500 O HOH D 105 O HOH D 118 2.16 REMARK 500 O HOH A 754 O HOH A 815 2.18 REMARK 500 O HOH A 688 O HOH A 757 2.19 REMARK 500 O HOH A 734 O HOH A 748 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 51 127.98 66.72 REMARK 500 LYS A 80 14.83 58.75 REMARK 500 ASN A 265 96.02 -161.83 REMARK 500 VAL A 298 -66.20 -104.31 REMARK 500 ASP A 299 34.84 -142.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 409 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 50 O REMARK 620 2 VAL A 51 O 71.1 REMARK 620 3 GLU A 53 OE1 126.5 74.7 REMARK 620 4 GLU A 53 OE2 86.1 84.7 50.5 REMARK 620 5 HOH A 667 O 129.2 75.7 77.6 127.8 REMARK 620 6 HOH A 717 O 140.2 147.2 75.8 87.8 84.1 REMARK 620 7 HOH A 725 O 78.9 147.0 115.1 80.0 136.0 61.3 REMARK 620 8 HOH A 759 O 88.0 109.2 142.5 162.2 68.0 86.0 82.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 412 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 88 O REMARK 620 2 LEU A 91 O 91.7 REMARK 620 3 GLU A 96 OE1 96.7 70.6 REMARK 620 4 HOH A 591 O 93.1 76.9 146.2 REMARK 620 5 HOH A 720 O 91.3 152.5 81.9 130.2 REMARK 620 6 HOH A 756 O 168.1 100.0 84.7 92.2 77.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 410 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 118 O REMARK 620 2 GLY A 120 O 94.5 REMARK 620 3 GLY A 122 O 95.7 83.5 REMARK 620 4 ASP A 162 OD1 87.9 150.8 125.3 REMARK 620 5 ASP A 162 OD2 83.2 158.5 75.5 50.7 REMARK 620 6 HOH A 672 O 91.3 73.6 156.5 77.3 127.8 REMARK 620 7 HOH A 680 O 169.8 95.6 86.8 82.7 87.9 90.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 414 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 123 O REMARK 620 2 GLU A 125 OE1 77.4 REMARK 620 3 GLU A 125 OE2 76.8 45.9 REMARK 620 4 HOH A 503 O 96.5 89.5 45.2 REMARK 620 5 HOH A 674 O 151.4 74.3 80.4 78.9 REMARK 620 6 HOH A 681 O 86.5 127.8 82.3 43.1 107.3 REMARK 620 7 HOH A 683 O 75.3 152.2 130.2 98.8 133.2 55.7 REMARK 620 8 HOH A 740 O 82.8 75.4 120.4 164.6 94.3 151.5 95.9 REMARK 620 9 HOH A 780 O 106.5 120.6 165.8 145.1 91.9 111.6 63.5 47.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 411 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 202 O REMARK 620 2 ARG A 205 O 81.5 REMARK 620 3 GLY A 207 O 96.7 83.9 REMARK 620 4 GLU A 247 OE1 80.7 152.2 77.1 REMARK 620 5 GLU A 247 OE2 84.3 144.6 130.1 53.6 REMARK 620 6 HOH A 630 O 97.2 76.9 154.3 126.5 72.9 REMARK 620 7 HOH A 739 O 170.1 108.3 84.2 89.9 87.7 85.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 413 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 234 OG REMARK 620 2 MET A 278 O 78.8 REMARK 620 3 GLY A 280 O 78.1 4.2 REMARK 620 4 GLY A 282 O 75.3 3.7 4.0 REMARK 620 5 ASP A 322 OD1 80.1 2.5 6.5 5.9 REMARK 620 6 ASP A 322 OD2 77.2 2.9 6.5 4.0 3.0 REMARK 620 7 HOH A 663 O 78.8 1.3 2.9 3.5 3.6 4.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 245 O REMARK 620 2 VAL A 248 O 98.8 REMARK 620 3 GLU A 253 OE1 114.1 68.2 REMARK 620 4 HOH A 666 O 82.1 74.9 141.4 REMARK 620 5 HOH A 686 O 78.5 148.0 83.7 134.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 416 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 519 O REMARK 620 2 HOH A 561 O 72.5 REMARK 620 3 HOH A 640 O 83.3 79.6 REMARK 620 4 HOH A 758 O 99.7 71.0 147.8 REMARK 620 5 HOH A 760 O 63.9 97.3 146.1 53.7 REMARK 620 6 HOH A 790 O 121.9 53.4 104.2 47.2 100.5 REMARK 620 7 HOH A 794 O 75.2 144.7 82.9 129.0 80.8 161.8 REMARK 620 N 1 2 3 4 5 6 DBREF 7ZVN A 34 339 UNP P07355 ANXA2_HUMAN 34 339 DBREF 7ZVN C 1 15 PDB 7ZVN 7ZVN 1 15 DBREF 7ZVN D 1 15 PDB 7ZVN 7ZVN 1 15 SEQADV 7ZVN SER A 33 UNP P07355 EXPRESSION TAG SEQADV 7ZVN ALA A 293 UNP P07355 VAL 293 VARIANT SEQRES 1 A 307 SER ASP ALA GLU ARG ASP ALA LEU ASN ILE GLU THR ALA SEQRES 2 A 307 ILE LYS THR LYS GLY VAL ASP GLU VAL THR ILE VAL ASN SEQRES 3 A 307 ILE LEU THR ASN ARG SER ASN ALA GLN ARG GLN ASP ILE SEQRES 4 A 307 ALA PHE ALA TYR GLN ARG ARG THR LYS LYS GLU LEU ALA SEQRES 5 A 307 SER ALA LEU LYS SER ALA LEU SER GLY HIS LEU GLU THR SEQRES 6 A 307 VAL ILE LEU GLY LEU LEU LYS THR PRO ALA GLN TYR ASP SEQRES 7 A 307 ALA SER GLU LEU LYS ALA SER MET LYS GLY LEU GLY THR SEQRES 8 A 307 ASP GLU ASP SER LEU ILE GLU ILE ILE CYS SER ARG THR SEQRES 9 A 307 ASN GLN GLU LEU GLN GLU ILE ASN ARG VAL TYR LYS GLU SEQRES 10 A 307 MET TYR LYS THR ASP LEU GLU LYS ASP ILE ILE SER ASP SEQRES 11 A 307 THR SER GLY ASP PHE ARG LYS LEU MET VAL ALA LEU ALA SEQRES 12 A 307 LYS GLY ARG ARG ALA GLU ASP GLY SER VAL ILE ASP TYR SEQRES 13 A 307 GLU LEU ILE ASP GLN ASP ALA ARG ASP LEU TYR ASP ALA SEQRES 14 A 307 GLY VAL LYS ARG LYS GLY THR ASP VAL PRO LYS TRP ILE SEQRES 15 A 307 SER ILE MET THR GLU ARG SER VAL PRO HIS LEU GLN LYS SEQRES 16 A 307 VAL PHE ASP ARG TYR LYS SER TYR SER PRO TYR ASP MET SEQRES 17 A 307 LEU GLU SER ILE ARG LYS GLU VAL LYS GLY ASP LEU GLU SEQRES 18 A 307 ASN ALA PHE LEU ASN LEU VAL GLN CYS ILE GLN ASN LYS SEQRES 19 A 307 PRO LEU TYR PHE ALA ASP ARG LEU TYR ASP SER MET LYS SEQRES 20 A 307 GLY LYS GLY THR ARG ASP LYS VAL LEU ILE ARG ILE MET SEQRES 21 A 307 ALA SER ARG SER GLU VAL ASP MET LEU LYS ILE ARG SER SEQRES 22 A 307 GLU PHE LYS ARG LYS TYR GLY LYS SER LEU TYR TYR TYR SEQRES 23 A 307 ILE GLN GLN ASP THR LYS GLY ASP TYR GLN LYS ALA LEU SEQRES 24 A 307 LEU TYR LEU CYS GLY GLY ASP ASP SEQRES 1 C 15 K39 N7X N7X K2F K39 GS OKN PST GS GS PST PST AS SEQRES 2 C 15 PST GS SEQRES 1 D 15 K39 N7X N7X K2F K39 GS OKN PST GS GS PST PST AS SEQRES 2 D 15 PST GS HET K39 C 1 24 HET N7X C 2 25 HET N7X C 3 25 HET K2F C 4 52 HET K39 C 5 27 HET GS C 6 44 HET OKN C 7 40 HET PST C 8 40 HET GS C 9 44 HET GS C 10 44 HET K39 D 1 24 HET N7X D 2 50 HET N7X D 3 50 HET K2F D 4 52 HET K39 D 5 54 HET GS D 6 44 HET OKN D 7 40 HET PST D 8 20 HET GS D 9 22 HET GS D 10 44 HET PST D 11 20 HET PST D 12 40 HET AS D 13 21 HET PST D 14 20 HET GS D 15 22 HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET CA A 409 1 HET CA A 410 1 HET CA A 411 1 HET CA A 412 1 HET CA A 413 1 HET CA A 414 1 HET CA A 415 1 HET MG A 416 1 HETNAM K39 2'-METHOXYETHYL-GUANOSINE-5'-THIOPHOSPHATE HETNAM N7X 5'-O-[(R)-HYDROXY(SULFANYLIDENE)-LAMBDA~5~-PHOSPHANYL]- HETNAM 2 N7X 2'-O-(2-METHOXYETHYL)-5-METHYLCYTIDINE HETNAM K2F 2'-METHOXYETHYL-ADENOSINE-5'-THIOPHOSPHATE HETNAM GS GUANOSINE-5'-THIO-MONOPHOSPHATE HETNAM OKN 5'-METHYL-2'-DEOXYCYTIDINE-5'-PHOSPHOROTHIOATE HETNAM PST THYMIDINE-5'-THIOPHOSPHATE HETNAM AS 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN K39 2-AZANYL-9-[(2R,3R,4R,5R)-5-[BIS(OXIDANYL) HETSYN 2 K39 PHOSPHINOTHIOYLOXYMETHYL]-3-(2-METHOXYETHOXY)-4- HETSYN 3 K39 OXIDANYL-OXOLAN-2-YL]-1H-PURIN-6-ONE HETSYN K2F (2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-2-[BIS(OXIDANYL) HETSYN 2 K2F PHOSPHINOTHIOYLOXYMETHYL]-4-(2-METHOXYETHOXY)OXOLAN-3- HETSYN 3 K2F OL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 K39 4(C13 H20 N5 O8 P S) FORMUL 2 N7X 4(C13 H22 N3 O8 P S) FORMUL 2 K2F 2(C13 H20 N5 O7 P S) FORMUL 2 GS 7(C10 H14 N5 O6 P S) FORMUL 2 OKN 2(C10 H16 N3 O6 P S) FORMUL 2 PST 5(C10 H15 N2 O7 P S) FORMUL 3 AS C10 H14 N5 O5 P S FORMUL 4 GOL 8(C3 H8 O3) FORMUL 12 CA 7(CA 2+) FORMUL 19 MG MG 2+ FORMUL 20 HOH *352(H2 O) HELIX 1 AA1 ASP A 34 THR A 48 1 15 HELIX 2 AA2 ASP A 52 THR A 61 1 10 HELIX 3 AA3 SER A 64 LYS A 80 1 17 HELIX 4 AA4 GLU A 82 LEU A 91 1 10 HELIX 5 AA5 SER A 92 LYS A 104 1 13 HELIX 6 AA6 THR A 105 LYS A 119 1 15 HELIX 7 AA7 ASP A 124 ARG A 135 1 12 HELIX 8 AA8 THR A 136 LYS A 152 1 17 HELIX 9 AA9 ASP A 154 THR A 163 1 10 HELIX 10 AB1 SER A 164 LYS A 176 1 13 HELIX 11 AB2 ASP A 187 GLY A 202 1 16 HELIX 12 AB3 ASP A 209 ARG A 220 1 12 HELIX 13 AB4 SER A 221 SER A 236 1 16 HELIX 14 AB5 ASP A 239 VAL A 248 1 10 HELIX 15 AB6 LYS A 249 ASN A 265 1 17 HELIX 16 AB7 ASN A 265 LYS A 279 1 15 HELIX 17 AB8 ARG A 284 SER A 296 1 13 HELIX 18 AB9 ASP A 299 GLY A 312 1 14 HELIX 19 AC1 SER A 314 THR A 323 1 10 HELIX 20 AC2 LYS A 324 GLY A 336 1 13 LINK O3' K39 C 1 P N7X C 2 1555 1555 1.61 LINK O3' N7X C 2 P N7X C 3 1555 1555 1.61 LINK O3' N7X C 3 P AK2F C 4 1555 1555 1.61 LINK O3' N7X C 3 P BK2F C 4 1555 1555 1.61 LINK O3'AK2F C 4 P K39 C 5 1555 1555 1.61 LINK O3'BK2F C 4 P K39 C 5 1555 1555 1.61 LINK O3' K39 C 5 P A GS C 6 1555 1555 1.61 LINK O3' K39 C 5 P B GS C 6 1555 1555 1.61 LINK O3'A GS C 6 P AOKN C 7 1555 1555 1.61 LINK O3'B GS C 6 P BOKN C 7 1555 1555 1.61 LINK O3'AOKN C 7 P APST C 8 1555 1555 1.61 LINK O3'BOKN C 7 P BPST C 8 1555 1555 1.61 LINK O3'APST C 8 P A GS C 9 1555 1555 1.61 LINK O3'BPST C 8 P B GS C 9 1555 1555 1.61 LINK O3'A GS C 9 P A GS C 10 1555 1555 1.61 LINK O3'B GS C 9 P B GS C 10 1555 1555 1.61 LINK O3' K39 D 1 P AN7X D 2 1555 1555 1.61 LINK O3' K39 D 1 P BN7X D 2 1555 1555 1.61 LINK O3'AN7X D 2 P AN7X D 3 1555 1555 1.61 LINK O3'BN7X D 2 P BN7X D 3 1555 1555 1.61 LINK O3'AN7X D 3 P AK2F D 4 1555 1555 1.61 LINK O3'BN7X D 3 P BK2F D 4 1555 1555 1.61 LINK O3'AK2F D 4 P AK39 D 5 1555 1555 1.61 LINK O3'BK2F D 4 P BK39 D 5 1555 1555 1.61 LINK O3'AK39 D 5 P A GS D 6 1555 1555 1.61 LINK O3'BK39 D 5 P B GS D 6 1555 1555 1.61 LINK O3'A GS D 6 P AOKN D 7 1555 1555 1.61 LINK O3'B GS D 6 P BOKN D 7 1555 1555 1.61 LINK O3'AOKN D 7 P PST D 8 1555 1555 1.61 LINK O3'BOKN D 7 P PST D 8 1555 1555 1.61 LINK O3' PST D 8 P GS D 9 1555 1555 1.60 LINK O3' GS D 9 P A GS D 10 1555 1555 1.61 LINK O3' GS D 9 P B GS D 10 1555 1555 1.61 LINK O3'A GS D 10 P PST D 11 1555 1555 1.61 LINK O3'B GS D 10 P PST D 11 1555 1555 1.61 LINK O3' PST D 11 P APST D 12 1555 1555 1.61 LINK O3' PST D 11 P BPST D 12 1555 1555 1.60 LINK O3'APST D 12 P AS D 13 1555 1555 1.60 LINK O3'BPST D 12 P AS D 13 1555 1555 1.61 LINK O3' AS D 13 P PST D 14 1555 1555 1.61 LINK O3' PST D 14 P GS D 15 1555 1555 1.62 LINK O GLY A 50 CA CA A 409 1555 1555 2.41 LINK O VAL A 51 CA CA A 409 1555 1555 2.40 LINK OE1 GLU A 53 CA CA A 409 1555 1555 2.56 LINK OE2 GLU A 53 CA CA A 409 1555 1555 2.59 LINK O LYS A 88 CA CA A 412 1555 1555 2.25 LINK O LEU A 91 CA CA A 412 1555 1555 2.29 LINK OE1 GLU A 96 CA CA A 412 1555 1555 2.33 LINK O MET A 118 CA CA A 410 1555 1555 2.31 LINK O GLY A 120 CA CA A 410 1555 1555 2.38 LINK O GLY A 122 CA CA A 410 1555 1555 2.50 LINK O THR A 123 CA CA A 414 1555 1555 2.28 LINK OE1 GLU A 125 CA CA A 414 1555 1555 2.50 LINK OE2 GLU A 125 CA CA A 414 1555 1555 3.03 LINK OD1 ASP A 162 CA CA A 410 1555 1555 2.45 LINK OD2 ASP A 162 CA CA A 410 1555 1555 2.65 LINK O GLY A 202 CA CA A 411 1555 1555 2.28 LINK O ARG A 205 CA CA A 411 1555 1555 2.27 LINK O GLY A 207 CA CA A 411 1555 1555 2.31 LINK OG SER A 234 CA CA A 413 1555 2555 2.39 LINK O ARG A 245 CA CA A 415 1555 1555 2.39 LINK OE1 GLU A 247 CA CA A 411 1555 1555 2.41 LINK OE2 GLU A 247 CA CA A 411 1555 1555 2.46 LINK O VAL A 248 CA CA A 415 1555 1555 2.40 LINK OE1 GLU A 253 CA CA A 415 1555 1555 2.24 LINK O MET A 278 CA CA A 413 1555 1555 2.31 LINK O GLY A 280 CA CA A 413 1555 1555 2.41 LINK O GLY A 282 CA CA A 413 1555 1555 2.42 LINK OD1 ASP A 322 CA CA A 413 1555 1555 2.46 LINK OD2 ASP A 322 CA CA A 413 1555 1555 2.51 LINK CA CA A 409 O HOH A 667 1555 1555 2.34 LINK CA CA A 409 O HOH A 717 1555 1555 2.38 LINK CA CA A 409 O HOH A 725 1555 1555 2.44 LINK CA CA A 409 O HOH A 759 1555 1555 2.38 LINK CA CA A 410 O HOH A 672 1555 1555 2.50 LINK CA CA A 410 O HOH A 680 1555 1555 2.39 LINK CA CA A 411 O HOH A 630 1555 1555 2.46 LINK CA CA A 411 O HOH A 739 1555 1555 2.40 LINK CA CA A 412 O HOH A 591 1555 1555 2.46 LINK CA CA A 412 O HOH A 720 1555 1555 2.31 LINK CA CA A 412 O HOH A 756 1555 1555 2.56 LINK CA CA A 413 O HOH A 663 1555 2545 2.30 LINK CA CA A 414 O HOH A 503 1555 1555 2.73 LINK CA CA A 414 O HOH A 674 1555 1555 2.35 LINK CA CA A 414 O HOH A 681 1555 1555 2.45 LINK CA CA A 414 O HOH A 683 1555 1555 2.55 LINK CA CA A 414 O HOH A 740 1555 1555 2.67 LINK CA CA A 414 O HOH A 780 1555 1555 2.40 LINK CA CA A 414 O HOH A 818 1555 1555 2.75 LINK CA CA A 415 O HOH A 666 1555 1555 2.35 LINK CA CA A 415 O HOH A 686 1555 1555 2.31 LINK MG MG A 416 O HOH A 519 1555 1555 2.50 LINK MG MG A 416 O HOH A 561 1555 1555 2.32 LINK MG MG A 416 O HOH A 640 1555 1555 2.48 LINK MG MG A 416 O HOH A 758 1555 1555 2.91 LINK MG MG A 416 O HOH A 760 1555 1555 2.34 LINK MG MG A 416 O HOH A 790 1555 1555 2.91 LINK MG MG A 416 O HOH A 794 1555 1555 2.32 CRYST1 55.621 57.502 70.478 90.00 90.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017979 0.000000 0.000076 0.00000 SCALE2 0.000000 0.017391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014189 0.00000