HEADER VIRAL PROTEIN 17-MAY-22 7ZVV TITLE CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA VIRUS IN TITLE 2 COMPLEX WITH INHIBITOR MI-2196 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT,NON-STRUCTURAL COMPND 5 PROTEIN 2B; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SERINE PROTEASE NS3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,NON-STRUCTURAL COMPND 11 PROTEIN 3; COMPND 12 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_TAXID: 64320; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: BZIPRO; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 9 ORGANISM_TAXID: 64320; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: BZIPRO KEYWDS FLAVIVIRIN, SERINE PROTEASE, VIRAL PROTEIN, NS2B-NS3, ZIKA VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR S.HUBER,T.STEINMETZER REVDAT 3 07-FEB-24 7ZVV 1 REMARK REVDAT 2 15-NOV-23 7ZVV 1 LINK ATOM REVDAT 1 24-MAY-23 7ZVV 0 JRNL AUTH S.HUBER,N.BRAUN,T.STEINMETZER JRNL TITL CRYSTAL STRUCTURE OF UNLINKED NS2B-NS3 PROTEASE FROM ZIKA JRNL TITL 2 VIRUS IN COMPLEX WITH INHIBITOR MI-2196 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5100 - 3.6300 0.99 2819 149 0.1515 0.1887 REMARK 3 2 3.6300 - 2.8800 1.00 2692 142 0.2001 0.2202 REMARK 3 3 2.8800 - 2.5200 1.00 2672 140 0.2091 0.2359 REMARK 3 4 2.5200 - 2.2900 0.99 2648 140 0.2133 0.2752 REMARK 3 5 2.2900 - 2.1200 0.99 2632 138 0.2053 0.2467 REMARK 3 6 2.1200 - 2.0000 1.00 2628 139 0.2053 0.2530 REMARK 3 7 2.0000 - 1.9000 0.99 2614 138 0.2155 0.2538 REMARK 3 8 1.9000 - 1.8200 0.99 2619 138 0.2307 0.2686 REMARK 3 9 1.8200 - 1.7500 0.98 2540 132 0.2564 0.3243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1485 REMARK 3 ANGLE : 0.768 2024 REMARK 3 CHIRALITY : 0.057 225 REMARK 3 PLANARITY : 0.005 284 REMARK 3 DIHEDRAL : 11.048 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0621 -32.1813 2.6806 REMARK 3 T TENSOR REMARK 3 T11: 0.7420 T22: 0.4261 REMARK 3 T33: 0.6696 T12: -0.0395 REMARK 3 T13: 0.1060 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 3.6975 L22: 8.1882 REMARK 3 L33: 4.7072 L12: -5.2845 REMARK 3 L13: 2.4546 L23: -2.8874 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: 1.1395 S13: -0.8056 REMARK 3 S21: -1.9779 S22: -0.0294 S23: -0.8009 REMARK 3 S31: 1.4556 S32: -1.0894 S33: -0.1680 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8218 -30.0533 16.8852 REMARK 3 T TENSOR REMARK 3 T11: 0.5369 T22: 0.5187 REMARK 3 T33: 0.4995 T12: -0.0476 REMARK 3 T13: 0.0990 T23: 0.1696 REMARK 3 L TENSOR REMARK 3 L11: 8.2598 L22: 3.7128 REMARK 3 L33: 3.9961 L12: 2.8129 REMARK 3 L13: -1.7865 L23: 2.4024 REMARK 3 S TENSOR REMARK 3 S11: -0.6438 S12: -0.0188 S13: -0.8786 REMARK 3 S21: 0.7411 S22: 0.4796 S23: 0.6038 REMARK 3 S31: 2.1357 S32: -0.1814 S33: 0.3740 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5692 -19.3081 25.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.6414 T22: 0.6602 REMARK 3 T33: 0.2790 T12: -0.0080 REMARK 3 T13: -0.0331 T23: 0.0708 REMARK 3 L TENSOR REMARK 3 L11: 9.0538 L22: 9.4881 REMARK 3 L33: 6.2521 L12: 7.5645 REMARK 3 L13: 4.5466 L23: 6.3499 REMARK 3 S TENSOR REMARK 3 S11: 0.8307 S12: -1.0618 S13: -0.6575 REMARK 3 S21: 1.2440 S22: -0.4677 S23: -0.9541 REMARK 3 S31: 0.7354 S32: 1.1924 S33: -0.2985 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6870 -12.2745 24.2736 REMARK 3 T TENSOR REMARK 3 T11: 0.6626 T22: 0.8834 REMARK 3 T33: 0.9112 T12: -0.1517 REMARK 3 T13: -0.2243 T23: 0.3779 REMARK 3 L TENSOR REMARK 3 L11: 6.3948 L22: 4.2485 REMARK 3 L33: 8.3456 L12: 1.6861 REMARK 3 L13: -4.3236 L23: -1.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.8152 S12: -2.4986 S13: -2.7899 REMARK 3 S21: -0.2504 S22: -2.0289 S23: -0.0560 REMARK 3 S31: 1.6065 S32: 1.9054 S33: 1.0281 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9950 -0.2996 15.5852 REMARK 3 T TENSOR REMARK 3 T11: 0.7105 T22: 0.4391 REMARK 3 T33: 0.6650 T12: 0.0031 REMARK 3 T13: 0.0293 T23: -0.2762 REMARK 3 L TENSOR REMARK 3 L11: 4.3342 L22: 4.0633 REMARK 3 L33: 6.8727 L12: -2.7552 REMARK 3 L13: 1.1398 L23: -3.8986 REMARK 3 S TENSOR REMARK 3 S11: -0.6234 S12: -0.4357 S13: 0.7871 REMARK 3 S21: 0.6151 S22: -0.1044 S23: 0.2059 REMARK 3 S31: -1.2845 S32: -0.2775 S33: 0.3866 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6188 -2.3832 1.9235 REMARK 3 T TENSOR REMARK 3 T11: 0.4740 T22: 0.3681 REMARK 3 T33: 0.8656 T12: -0.0094 REMARK 3 T13: -0.1805 T23: 0.2086 REMARK 3 L TENSOR REMARK 3 L11: 5.7787 L22: 0.2606 REMARK 3 L33: 7.0345 L12: -0.8855 REMARK 3 L13: 0.7716 L23: -0.7618 REMARK 3 S TENSOR REMARK 3 S11: -0.2986 S12: 0.5818 S13: 1.3482 REMARK 3 S21: -0.8866 S22: 0.8125 S23: 1.9823 REMARK 3 S31: -0.7248 S32: -0.3598 S33: -0.0113 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9132 -29.7215 11.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.3864 T22: 0.3034 REMARK 3 T33: 0.3997 T12: -0.0290 REMARK 3 T13: 0.0383 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 8.0247 L22: 6.5490 REMARK 3 L33: 2.2514 L12: -1.7468 REMARK 3 L13: -3.6190 L23: 1.3841 REMARK 3 S TENSOR REMARK 3 S11: -0.4115 S12: -0.2176 S13: -0.9602 REMARK 3 S21: 0.2104 S22: -0.0956 S23: 0.3808 REMARK 3 S31: 0.8909 S32: -0.4891 S33: 0.5794 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2718 -24.5317 7.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.2100 REMARK 3 T33: 0.3118 T12: -0.0183 REMARK 3 T13: -0.0016 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 7.3771 L22: 8.3224 REMARK 3 L33: 5.6535 L12: -0.4933 REMARK 3 L13: 0.9138 L23: 0.9648 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: 0.1332 S13: -0.7471 REMARK 3 S21: -0.5296 S22: -0.0862 S23: 0.3847 REMARK 3 S31: 0.4372 S32: -0.1391 S33: 0.2792 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8315 -30.9528 3.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.5731 T22: 0.3012 REMARK 3 T33: 0.7080 T12: 0.0175 REMARK 3 T13: -0.1092 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 5.8422 L22: 6.7356 REMARK 3 L33: 5.3084 L12: 1.3141 REMARK 3 L13: 1.8641 L23: -3.4559 REMARK 3 S TENSOR REMARK 3 S11: 0.1160 S12: -0.0525 S13: -1.2098 REMARK 3 S21: -0.4111 S22: -0.3076 S23: -0.3390 REMARK 3 S31: 0.6207 S32: -0.0109 S33: 0.2492 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0010 -24.4152 5.2821 REMARK 3 T TENSOR REMARK 3 T11: 0.3378 T22: 0.4298 REMARK 3 T33: 0.7076 T12: -0.0442 REMARK 3 T13: -0.0907 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 7.7932 L22: 2.8382 REMARK 3 L33: 6.0861 L12: 2.8831 REMARK 3 L13: 0.3982 L23: -3.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.1000 S12: 0.1575 S13: 0.1933 REMARK 3 S21: -0.4755 S22: 0.0575 S23: 1.2619 REMARK 3 S31: 0.4353 S32: -0.2811 S33: -0.1040 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6513 -16.1881 4.8755 REMARK 3 T TENSOR REMARK 3 T11: 0.3074 T22: 0.3173 REMARK 3 T33: 0.6654 T12: 0.0305 REMARK 3 T13: -0.0866 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.9719 L22: 2.7018 REMARK 3 L33: 5.7838 L12: -0.1952 REMARK 3 L13: 0.6793 L23: -3.6217 REMARK 3 S TENSOR REMARK 3 S11: -0.0867 S12: -0.1530 S13: 1.1392 REMARK 3 S21: -0.2336 S22: -0.0718 S23: 2.0764 REMARK 3 S31: -0.2783 S32: 0.1900 S33: -0.1207 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9259 -12.5826 18.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.4341 T22: 0.5348 REMARK 3 T33: 0.5489 T12: -0.0617 REMARK 3 T13: 0.2067 T23: -0.1698 REMARK 3 L TENSOR REMARK 3 L11: 0.5733 L22: 5.0907 REMARK 3 L33: 2.6908 L12: 0.0862 REMARK 3 L13: 1.1259 L23: 1.3109 REMARK 3 S TENSOR REMARK 3 S11: 0.5769 S12: -1.1043 S13: 0.5568 REMARK 3 S21: 1.2878 S22: -0.6373 S23: 1.1065 REMARK 3 S31: 0.3903 S32: -0.4178 S33: 0.1153 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2561 -20.6828 15.5698 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.3473 REMARK 3 T33: 0.3049 T12: -0.0245 REMARK 3 T13: 0.0036 T23: 0.0567 REMARK 3 L TENSOR REMARK 3 L11: 5.6187 L22: 7.7986 REMARK 3 L33: 7.4382 L12: -3.3291 REMARK 3 L13: -2.1163 L23: 4.9459 REMARK 3 S TENSOR REMARK 3 S11: 0.1915 S12: -0.5234 S13: 0.1326 REMARK 3 S21: 0.0341 S22: -0.0535 S23: -1.0332 REMARK 3 S31: -0.1314 S32: 0.2630 S33: -0.1200 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5520 -6.9864 16.9868 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.3648 REMARK 3 T33: 0.3730 T12: -0.0105 REMARK 3 T13: 0.0935 T23: -0.1204 REMARK 3 L TENSOR REMARK 3 L11: 5.3499 L22: 4.7386 REMARK 3 L33: 5.5877 L12: 2.1851 REMARK 3 L13: 0.7948 L23: -0.0820 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: -0.6451 S13: 1.1301 REMARK 3 S21: 0.9016 S22: -0.1537 S23: 0.1159 REMARK 3 S31: -0.4456 S32: -0.1491 S33: 0.1320 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8558 -9.9700 10.2609 REMARK 3 T TENSOR REMARK 3 T11: 0.2963 T22: 0.2870 REMARK 3 T33: 0.3681 T12: 0.0197 REMARK 3 T13: 0.0313 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.1674 L22: 2.0732 REMARK 3 L33: 3.7346 L12: 2.0573 REMARK 3 L13: 0.0379 L23: 1.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: -0.1061 S13: 0.6249 REMARK 3 S21: 0.2309 S22: -0.0497 S23: 0.4487 REMARK 3 S31: -0.0701 S32: -0.0875 S33: 0.0103 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7100 -15.3074 23.1120 REMARK 3 T TENSOR REMARK 3 T11: 0.7146 T22: 0.6186 REMARK 3 T33: 0.2941 T12: -0.0678 REMARK 3 T13: 0.3446 T23: -0.1513 REMARK 3 L TENSOR REMARK 3 L11: 0.0669 L22: 0.3890 REMARK 3 L33: 2.9629 L12: -0.1100 REMARK 3 L13: 0.4726 L23: -1.0534 REMARK 3 S TENSOR REMARK 3 S11: 0.2053 S12: -1.2266 S13: 0.8563 REMARK 3 S21: 1.7204 S22: -0.7878 S23: 1.3965 REMARK 3 S31: -0.1399 S32: 0.1230 S33: -0.1442 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7403 -11.5817 10.2602 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.2902 REMARK 3 T33: 0.2628 T12: 0.0121 REMARK 3 T13: -0.0015 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 6.3649 L22: 6.7451 REMARK 3 L33: 3.7019 L12: 2.5180 REMARK 3 L13: -2.5821 L23: -0.7267 REMARK 3 S TENSOR REMARK 3 S11: 0.2178 S12: -0.2002 S13: 0.6917 REMARK 3 S21: -0.0077 S22: -0.0196 S23: 0.4747 REMARK 3 S31: 0.0118 S32: 0.0767 S33: -0.2027 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1462 -8.4900 9.9043 REMARK 3 T TENSOR REMARK 3 T11: 0.2462 T22: 0.2077 REMARK 3 T33: 0.3451 T12: 0.0376 REMARK 3 T13: 0.0069 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 4.1262 L22: 3.9364 REMARK 3 L33: 3.7699 L12: -0.2671 REMARK 3 L13: 0.3727 L23: 1.2406 REMARK 3 S TENSOR REMARK 3 S11: -0.1187 S12: -0.1509 S13: 0.7260 REMARK 3 S21: -0.1125 S22: 0.0485 S23: 0.7088 REMARK 3 S31: -0.1174 S32: -0.0834 S33: 0.0257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.150 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 FOR THE DATA SET : 27.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47000 REMARK 200 FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6 0.2 M REMARK 280 AMMONIUM SULFATE 18% PEG2000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.81750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.32250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.32250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 49 CG1 CG2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 VAL A 87 CG1 CG2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 28 NE CZ NH1 NH2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 64 CZ NH1 NH2 REMARK 470 ARG B 105 CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 LYS B 117 CD CE NZ REMARK 470 LYS B 119 CE NZ REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 29 -137.36 -101.53 REMARK 500 CYS B 80 -24.56 84.77 REMARK 500 LEU B 92 -39.27 -131.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 359 DISTANCE = 6.67 ANGSTROMS DBREF 7ZVV A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF 7ZVV B 1 177 UNP Q32ZE1 POLG_ZIKV 1499 1675 SEQADV 7ZVV MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 7ZVV THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZVV GLY B 0 UNP Q32ZE1 EXPRESSION TAG SEQADV 7ZVV LYS B 107 UNP Q32ZE1 ARG 1605 CONFLICT SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET V7T B 201 12 HET ZAL B 202 11 HET V8N B 203 11 HET 4CF B 204 13 HET 3CF B 205 13 HETNAM V7T (2R)-6-AZANYL-2-CARBAMIMIDAMIDO-HEXANOIC ACID HETNAM ZAL 3-CYCLOHEXYL-D-ALANINE HETNAM V8N 2-[3-(AMINOMETHYL)PHENYL]ETHANOIC ACID HETNAM 4CF 4-CYANO-L-PHENYLALANINE HETNAM 3CF 3-CYANO-L-PHENYLALANINE FORMUL 3 V7T C7 H16 N4 O2 FORMUL 4 ZAL C9 H17 N O2 FORMUL 5 V8N C9 H11 N O2 FORMUL 6 4CF C10 H10 N2 O2 FORMUL 7 3CF C10 H10 N2 O2 FORMUL 8 HOH *82(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 ASP A 50 GLY A 57 1 N MET A 51 O ARG B 59 SHEET 4 AA1 8 GLY B 21 ARG B 28 -1 O MET B 26 N TYR A 52 SHEET 5 AA1 8 SER B 33 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 6 AA1 8 VAL B 45 MET B 49 -1 O VAL B 45 N GLN B 42 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 LINK C V7T B 201 N ZAL B 202 1555 1555 1.34 LINK NZ V7T B 201 C 3CF B 205 1555 1555 1.34 LINK C ZAL B 202 N V8N B 203 1555 1555 1.34 LINK C V8N B 203 N 4CF B 204 1555 1555 1.33 LINK C 4CF B 204 N 3CF B 205 1555 1555 1.34 CRYST1 49.635 60.645 80.388 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020147 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012440 0.00000