HEADER CELL ADHESION 19-MAY-22 7ZWF TITLE PFS48/45 BOUND TO SCFV FRAGMENT OF MONOCLONAL ANTIBODY 32F3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMETOCYTE SURFACE PROTEIN P45/48; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PFS48/45; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 32F3SCFV; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: MONOCLONAL ANTIBODY 32F3; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: PF45/48, PFS45-48, PFS45/48, PF13_0247, PF3D7_1346700; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PFS48/45, MALARIA, TRANSMISSION-BLOCKING, PLASMODIUM FALCIPARUM, KEYWDS 2 GAMETE, ANTIBODY, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.T.KO,F.L.LENNARTZ,M.K.HIGGINS REVDAT 3 31-JAN-24 7ZWF 1 REMARK REVDAT 2 12-OCT-22 7ZWF 1 JRNL REVDAT 1 22-JUN-22 7ZWF 0 JRNL AUTH K.T.KO,F.LENNARTZ,D.MEKHAIEL,B.GULOGLU,A.MARINI,D.J.DEUKER, JRNL AUTH 2 C.A.LONG,M.M.JORE,K.MIURA,S.BISWAS,M.K.HIGGINS JRNL TITL STRUCTURE OF THE MALARIA VACCINE CANDIDATE PFS48/45 AND ITS JRNL TITL 2 RECOGNITION BY TRANSMISSION BLOCKING ANTIBODIES. JRNL REF NAT COMMUN V. 13 5603 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36153317 JRNL DOI 10.1038/S41467-022-33379-6 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 (20-OCT-2021) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 40794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.276 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 42.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 783 REMARK 3 BIN R VALUE (WORKING SET) : 0.4896 REMARK 3 BIN FREE R VALUE : 0.5075 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.04 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 33 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3865 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.12990 REMARK 3 B22 (A**2) : -1.70240 REMARK 3 B33 (A**2) : -4.42750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.234 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.190 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.238 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.193 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3981 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5393 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1351 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 658 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3981 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 536 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2876 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.14 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.8420 -5.7593 16.7619 REMARK 3 T TENSOR REMARK 3 T11: -0.1633 T22: 0.4950 REMARK 3 T33: -0.2422 T12: -0.1260 REMARK 3 T13: 0.0535 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 1.3573 REMARK 3 L33: 2.8894 L12: -0.5824 REMARK 3 L13: -0.5078 L23: 1.0349 REMARK 3 S TENSOR REMARK 3 S11: 0.1035 S12: 0.0310 S13: 0.1173 REMARK 3 S21: -0.2217 S22: -0.1705 S23: -0.0907 REMARK 3 S31: 0.5476 S32: -0.3378 S33: 0.0670 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 25.2277 23.2142 41.3535 REMARK 3 T TENSOR REMARK 3 T11: -0.3670 T22: 0.3827 REMARK 3 T33: -0.0681 T12: 0.0248 REMARK 3 T13: -0.0575 T23: -0.1813 REMARK 3 L TENSOR REMARK 3 L11: 4.3084 L22: 0.5059 REMARK 3 L33: 1.8349 L12: 0.1830 REMARK 3 L13: 0.5481 L23: -0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: -0.4352 S13: 0.6942 REMARK 3 S21: -0.0686 S22: -0.1162 S23: -0.1199 REMARK 3 S31: -0.0955 S32: -0.1733 S33: 0.2990 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 586552 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 73.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H5N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.0, 0.2M CACL2, 20% REMARK 280 PEG6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.39350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.39350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.91300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.05750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.91300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.05750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.39350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.91300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.05750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.39350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.91300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.05750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.39350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LEU A 3 REMARK 465 TYR A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 ALA A 10 REMARK 465 GLN A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 PHE A 14 REMARK 465 ILE A 15 REMARK 465 LEU A 16 REMARK 465 TYR A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 LEU A 22 REMARK 465 ARG A 23 REMARK 465 ILE A 24 REMARK 465 ILE A 25 REMARK 465 SER A 26 REMARK 465 GLY A 27 REMARK 465 ASN A 28 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 PHE A 31 REMARK 465 CYS A 32 REMARK 465 LYS A 33 REMARK 465 PRO A 34 REMARK 465 SER A 35 REMARK 465 SER A 36 REMARK 465 LEU A 37 REMARK 465 ASN A 38 REMARK 465 SER A 39 REMARK 465 GLU A 40 REMARK 465 ILE A 41 REMARK 465 SER A 42 REMARK 465 GLY A 43 REMARK 465 PHE A 44 REMARK 465 ILE A 45 REMARK 465 GLY A 46 REMARK 465 TYR A 47 REMARK 465 LYS A 48 REMARK 465 CYS A 49 REMARK 465 ASN A 50 REMARK 465 PHE A 51 REMARK 465 SER A 52 REMARK 465 ASN A 53 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 VAL A 56 REMARK 465 HIS A 57 REMARK 465 ASN A 58 REMARK 465 LEU A 59 REMARK 465 LYS A 60 REMARK 465 PRO A 61 REMARK 465 ASP A 62 REMARK 465 MET A 63 REMARK 465 ARG A 64 REMARK 465 GLU A 65 REMARK 465 ARG A 66 REMARK 465 ARG A 67 REMARK 465 SER A 68 REMARK 465 ILE A 69 REMARK 465 PHE A 70 REMARK 465 ARG A 83 REMARK 465 LEU A 84 REMARK 465 ILE A 85 REMARK 465 ILE A 86 REMARK 465 PRO A 87 REMARK 465 LYS A 88 REMARK 465 LYS A 89 REMARK 465 SER A 90 REMARK 465 SER A 91 REMARK 465 SER A 92 REMARK 465 PRO A 93 REMARK 465 GLU A 94 REMARK 465 PHE A 95 REMARK 465 LYS A 96 REMARK 465 ILE A 97 REMARK 465 LEU A 98 REMARK 465 PRO A 99 REMARK 465 GLU A 100 REMARK 465 LYS A 101 REMARK 465 CYS A 102 REMARK 465 PHE A 103 REMARK 465 GLN A 104 REMARK 465 LYS A 105 REMARK 465 VAL A 106 REMARK 465 TYR A 107 REMARK 465 THR A 108 REMARK 465 ASP A 109 REMARK 465 TYR A 110 REMARK 465 GLU A 111 REMARK 465 ASN A 112 REMARK 465 ARG A 113 REMARK 465 VAL A 114 REMARK 465 GLU A 115 REMARK 465 THR A 116 REMARK 465 ASP A 117 REMARK 465 ILE A 118 REMARK 465 SER A 119 REMARK 465 GLU A 120 REMARK 465 LEU A 121 REMARK 465 GLY A 122 REMARK 465 LEU A 123 REMARK 465 ILE A 124 REMARK 465 ILE A 128 REMARK 465 GLU A 129 REMARK 465 GLU A 130 REMARK 465 ASN A 131 REMARK 465 ASP A 132 REMARK 465 THR A 133 REMARK 465 ASN A 134 REMARK 465 PRO A 135 REMARK 465 ASN A 136 REMARK 465 TYR A 137 REMARK 465 ASN A 138 REMARK 465 GLU A 139 REMARK 465 ARG A 140 REMARK 465 PHE A 147 REMARK 465 SER A 148 REMARK 465 PRO A 149 REMARK 465 LYS A 150 REMARK 465 ASP A 151 REMARK 465 ILE A 152 REMARK 465 GLU A 153 REMARK 465 PHE A 154 REMARK 465 PHE A 155 REMARK 465 CYS A 156 REMARK 465 PHE A 157 REMARK 465 CYS A 158 REMARK 465 ASP A 159 REMARK 465 ASN A 160 REMARK 465 THR A 161 REMARK 465 GLU A 162 REMARK 465 LYS A 163 REMARK 465 VAL A 164 REMARK 465 ILE A 165 REMARK 465 SER A 166 REMARK 465 SER A 167 REMARK 465 ILE A 168 REMARK 465 GLU A 169 REMARK 465 GLY A 170 REMARK 465 ARG A 171 REMARK 465 SER A 172 REMARK 465 ALA A 173 REMARK 465 MET A 174 REMARK 465 THR A 192 REMARK 465 ASN A 193 REMARK 465 ASP A 194 REMARK 465 LEU A 195 REMARK 465 PHE A 196 REMARK 465 THR A 197 REMARK 465 TYR A 198 REMARK 465 LEU A 199 REMARK 465 PRO A 200 REMARK 465 LYS A 201 REMARK 465 THR A 202 REMARK 465 TYR A 203 REMARK 465 ASN A 204 REMARK 465 GLU A 205 REMARK 465 SER A 206 REMARK 465 ASN A 207 REMARK 465 ALA A 428 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ILE B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 SER B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 MET B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 SER B 14 REMARK 465 LEU B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 SER B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 LEU B 23 REMARK 465 MET B 24 REMARK 465 GLY B 25 REMARK 465 CYS B 26 REMARK 465 VAL B 27 REMARK 465 ALA B 28 REMARK 465 GLU B 29 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 SER B 154 REMARK 465 ARG B 155 REMARK 465 SER B 156 REMARK 465 GLY B 275 REMARK 465 THR B 276 REMARK 465 LYS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 HIS B 282 REMARK 465 HIS B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 72 55.11 -112.42 REMARK 500 TYR A 182 118.33 -35.32 REMARK 500 PRO A 183 2.09 -68.94 REMARK 500 PHE A 235 17.50 54.78 REMARK 500 ALA A 242 130.97 -175.80 REMARK 500 LYS A 278 -119.12 59.52 REMARK 500 LYS A 292 108.01 -55.06 REMARK 500 ASN A 337 68.49 -165.70 REMARK 500 PRO A 350 -146.08 -76.95 REMARK 500 ASP A 415 -121.90 62.83 REMARK 500 SER B 159 -168.88 -165.13 REMARK 500 SER B 164 2.28 58.04 REMARK 500 TRP B 214 -52.85 -127.69 REMARK 500 THR B 218 -50.13 78.05 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZWF A 1 428 UNP Q8I6T1 P4548_PLAF7 1 428 DBREF 7ZWF B 1 283 PDB 7ZWF 7ZWF 1 283 SEQRES 1 A 428 MET MET LEU TYR ILE SER ALA LYS LYS ALA GLN VAL ALA SEQRES 2 A 428 PHE ILE LEU TYR ILE VAL LEU VAL LEU ARG ILE ILE SER SEQRES 3 A 428 GLY ASN ASN ASP PHE CYS LYS PRO SER SER LEU ASN SER SEQRES 4 A 428 GLU ILE SER GLY PHE ILE GLY TYR LYS CYS ASN PHE SER SEQRES 5 A 428 ASN GLU GLY VAL HIS ASN LEU LYS PRO ASP MET ARG GLU SEQRES 6 A 428 ARG ARG SER ILE PHE CYS THR ILE HIS SER TYR PHE ILE SEQRES 7 A 428 TYR ASP LYS ILE ARG LEU ILE ILE PRO LYS LYS SER SER SEQRES 8 A 428 SER PRO GLU PHE LYS ILE LEU PRO GLU LYS CYS PHE GLN SEQRES 9 A 428 LYS VAL TYR THR ASP TYR GLU ASN ARG VAL GLU THR ASP SEQRES 10 A 428 ILE SER GLU LEU GLY LEU ILE GLU TYR GLU ILE GLU GLU SEQRES 11 A 428 ASN ASP THR ASN PRO ASN TYR ASN GLU ARG THR ILE THR SEQRES 12 A 428 ILE SER PRO PHE SER PRO LYS ASP ILE GLU PHE PHE CYS SEQRES 13 A 428 PHE CYS ASP ASN THR GLU LYS VAL ILE SER SER ILE GLU SEQRES 14 A 428 GLY ARG SER ALA MET VAL HIS VAL ARG VAL LEU LYS TYR SEQRES 15 A 428 PRO HIS ASN ILE LEU PHE THR ASN LEU THR ASN ASP LEU SEQRES 16 A 428 PHE THR TYR LEU PRO LYS THR TYR ASN GLU SER ASN PHE SEQRES 17 A 428 VAL SER ASN VAL LEU GLU VAL GLU LEU ASN ASP GLY GLU SEQRES 18 A 428 LEU PHE VAL LEU ALA CYS GLU LEU ILE ASN LYS LYS CYS SEQRES 19 A 428 PHE GLN GLU GLY LYS GLU LYS ALA LEU TYR LYS SER ASN SEQRES 20 A 428 LYS ILE ILE TYR HIS LYS ASN LEU THR ILE PHE LYS ALA SEQRES 21 A 428 PRO PHE TYR VAL THR SER LYS ASP VAL ASN THR GLU CYS SEQRES 22 A 428 THR CYS LYS PHE LYS ASN ASN ASN TYR LYS ILE VAL LEU SEQRES 23 A 428 LYS PRO LYS TYR GLU LYS LYS VAL ILE HIS GLY CYS ASN SEQRES 24 A 428 PHE SER SER ASN VAL SER SER LYS HIS THR PHE THR ASP SEQRES 25 A 428 SER LEU ASP ILE SER LEU VAL ASP ASP SER ALA HIS ILE SEQRES 26 A 428 SER CYS ASN VAL HIS LEU SER GLU PRO LYS TYR ASN HIS SEQRES 27 A 428 LEU VAL GLY LEU ASN CYS PRO GLY ASP ILE ILE PRO ASP SEQRES 28 A 428 CYS PHE PHE GLN VAL TYR GLN PRO GLU SER GLU GLU LEU SEQRES 29 A 428 GLU PRO SER ASN ILE VAL TYR LEU ASP SER GLN ILE ASN SEQRES 30 A 428 ILE GLY ASP ILE GLU TYR TYR GLU ASP ALA GLU GLY ASP SEQRES 31 A 428 ASP LYS ILE LYS LEU PHE GLY ILE VAL GLY SER ILE PRO SEQRES 32 A 428 LYS THR THR SER PHE THR CYS ILE CYS LYS LYS ASP LYS SEQRES 33 A 428 LYS SER ALA TYR MET THR VAL THR ILE ASP SER ALA SEQRES 1 B 283 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 B 283 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 B 283 VAL ALA GLU THR GLY ASP VAL LYS LEU VAL GLU SER GLY SEQRES 4 B 283 GLY GLY LEU VAL LYS LEU GLY GLY SER LEU LYS LEU SER SEQRES 5 B 283 CYS ALA ALA SER GLY PHE THR PHE SER SER TYR TYR MET SEQRES 6 B 283 SER TRP VAL ARG GLN THR PRO GLU LYS ARG LEU GLU LEU SEQRES 7 B 283 VAL ALA ALA ILE ASN ASN ASN GLY GLY SER THR TYR TYR SEQRES 8 B 283 PRO ASP THR VAL LYS GLY ARG PHE THR ILE SER ARG ASP SEQRES 9 B 283 ASN ALA LYS ASN THR LEU ASN LEU GLN MET ASN SER LEU SEQRES 10 B 283 LYS SER GLU ASP THR ALA LEU TYR TYR CYS THR ARG GLN SEQRES 11 B 283 HIS TYR GLY ASN LEU TYR PHE PHE ASP TYR TRP GLY GLN SEQRES 12 B 283 GLY THR THR LEU THR VAL SER GLY GLY SER SER ARG SER SEQRES 13 B 283 SER SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY GLN SEQRES 14 B 283 ILE VAL LEU SER GLN SER PRO ALA ILE LEU SER ALA SER SEQRES 15 B 283 PRO GLY GLU LYS VAL THR MET THR CYS ARG ALA SER SER SEQRES 16 B 283 SER VAL THR TYR ILE HIS TRP TYR GLN GLN LYS PRO GLY SEQRES 17 B 283 SER SER PRO LYS PRO TRP ILE GLN ALA THR SER SER LEU SEQRES 18 B 283 ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER GLY SER SEQRES 19 B 283 GLY THR SER TYR SER LEU SER ILE SER ARG VAL GLU ALA SEQRES 20 B 283 GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SER SEQRES 21 B 283 ASN PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU LEU SEQRES 22 B 283 LYS GLY THR LYS HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET FUC C 2 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG C8 H15 N O6 FORMUL 3 FUC C6 H12 O5 FORMUL 4 HOH *94(H2 O) HELIX 1 AA1 PHE A 208 SER A 210 5 3 HELIX 2 AA2 ASP A 315 VAL A 319 5 5 HELIX 3 AA3 LEU A 372 ASN A 377 1 6 HELIX 4 AA4 THR B 59 TYR B 63 5 5 HELIX 5 AA5 LYS B 118 THR B 122 5 5 HELIX 6 AA6 HIS B 131 LEU B 135 5 5 HELIX 7 AA7 GLU B 246 ALA B 250 5 5 SHEET 1 AA1 2 HIS A 74 SER A 75 0 SHEET 2 AA1 2 ARG A 178 VAL A 179 1 O ARG A 178 N SER A 75 SHEET 1 AA2 2 ASP A 80 LYS A 81 0 SHEET 2 AA2 2 THR A 143 ILE A 144 -1 O ILE A 144 N ASP A 80 SHEET 1 AA3 4 ILE A 186 ASN A 190 0 SHEET 2 AA3 4 LEU A 222 ALA A 226 1 O VAL A 224 N THR A 189 SHEET 3 AA3 4 LEU A 255 LYS A 259 -1 O PHE A 258 N PHE A 223 SHEET 4 AA3 4 LYS A 248 ILE A 250 -1 N ILE A 250 O ILE A 257 SHEET 1 AA4 3 VAL A 212 LEU A 217 0 SHEET 2 AA4 3 ASN A 280 PRO A 288 1 O VAL A 285 N LEU A 213 SHEET 3 AA4 3 THR A 271 PHE A 277 -1 N CYS A 275 O TYR A 282 SHEET 1 AA5 5 PHE A 310 SER A 313 0 SHEET 2 AA5 5 ILE A 295 ASN A 299 1 N ILE A 295 O THR A 311 SHEET 3 AA5 5 TYR A 336 CYS A 344 1 O LEU A 339 N HIS A 296 SHEET 4 AA5 5 LYS A 392 GLY A 400 -1 O LYS A 392 N CYS A 344 SHEET 5 AA5 5 TYR A 383 ALA A 387 -1 N TYR A 384 O LEU A 395 SHEET 1 AA6 4 HIS A 324 LEU A 331 0 SHEET 2 AA6 4 LYS A 417 ILE A 425 1 O THR A 424 N LEU A 331 SHEET 3 AA6 4 THR A 406 LYS A 414 -1 N CYS A 410 O MET A 421 SHEET 4 AA6 4 ASP A 347 ILE A 349 -1 N ILE A 349 O ILE A 411 SHEET 1 AA7 2 GLN A 355 TYR A 357 0 SHEET 2 AA7 2 ILE A 369 TYR A 371 -1 O VAL A 370 N VAL A 356 SHEET 1 AA8 4 LYS B 34 SER B 38 0 SHEET 2 AA8 4 LEU B 49 SER B 56 -1 O SER B 52 N SER B 38 SHEET 3 AA8 4 THR B 109 MET B 114 -1 O MET B 114 N LEU B 49 SHEET 4 AA8 4 PHE B 99 ASP B 104 -1 N SER B 102 O ASN B 111 SHEET 1 AA9 6 LEU B 42 VAL B 43 0 SHEET 2 AA9 6 THR B 145 VAL B 149 1 O THR B 148 N VAL B 43 SHEET 3 AA9 6 ALA B 123 GLN B 130 -1 N TYR B 125 O THR B 145 SHEET 4 AA9 6 TYR B 64 GLN B 70 -1 N VAL B 68 O TYR B 126 SHEET 5 AA9 6 LEU B 76 ILE B 82 -1 O VAL B 79 N TRP B 67 SHEET 6 AA9 6 THR B 89 TYR B 90 -1 O TYR B 90 N ALA B 81 SHEET 1 AB1 4 LEU B 42 VAL B 43 0 SHEET 2 AB1 4 THR B 145 VAL B 149 1 O THR B 148 N VAL B 43 SHEET 3 AB1 4 ALA B 123 GLN B 130 -1 N TYR B 125 O THR B 145 SHEET 4 AB1 4 TYR B 140 TRP B 141 -1 O TYR B 140 N ARG B 129 SHEET 1 AB2 4 LEU B 172 SER B 175 0 SHEET 2 AB2 4 VAL B 187 ALA B 193 -1 O ARG B 192 N SER B 173 SHEET 3 AB2 4 SER B 237 ILE B 242 -1 O LEU B 240 N MET B 189 SHEET 4 AB2 4 PHE B 229 SER B 234 -1 N SER B 232 O SER B 239 SHEET 1 AB3 6 ILE B 178 SER B 180 0 SHEET 2 AB3 6 THR B 269 GLU B 272 1 O GLU B 272 N LEU B 179 SHEET 3 AB3 6 THR B 252 GLN B 257 -1 N TYR B 253 O THR B 269 SHEET 4 AB3 6 HIS B 201 GLN B 205 -1 N GLN B 205 O THR B 252 SHEET 5 AB3 6 LYS B 212 GLN B 216 -1 O ILE B 215 N TRP B 202 SHEET 6 AB3 6 SER B 220 LEU B 221 -1 O SER B 220 N GLN B 216 SHEET 1 AB4 4 ILE B 178 SER B 180 0 SHEET 2 AB4 4 THR B 269 GLU B 272 1 O GLU B 272 N LEU B 179 SHEET 3 AB4 4 THR B 252 GLN B 257 -1 N TYR B 253 O THR B 269 SHEET 4 AB4 4 THR B 264 PHE B 265 -1 O THR B 264 N GLN B 257 SSBOND 1 CYS A 227 CYS A 275 1555 1555 2.03 SSBOND 2 CYS A 234 CYS A 273 1555 1555 2.04 SSBOND 3 CYS A 298 CYS A 327 1555 1555 2.05 SSBOND 4 CYS A 344 CYS A 412 1555 1555 2.03 SSBOND 5 CYS A 352 CYS A 410 1555 1555 2.04 SSBOND 6 CYS B 53 CYS B 127 1555 1555 2.05 SSBOND 7 CYS B 191 CYS B 255 1555 1555 2.07 LINK ND2 ASN A 303 C1 NAG C 1 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.40 CISPEP 1 ILE A 349 PRO A 350 0 -7.12 CISPEP 2 CYS A 352 PHE A 353 0 -3.02 CISPEP 3 SER B 175 PRO B 176 0 0.89 CISPEP 4 ASN B 261 PRO B 262 0 3.92 CRYST1 81.826 126.115 146.787 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012221 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006813 0.00000