HEADER TRANSCRIPTION 19-MAY-22 7ZWN TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH A WVIP TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B, C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, CANCER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SHETTY,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 2 31-JAN-24 7ZWN 1 REMARK REVDAT 1 16-NOV-22 7ZWN 0 JRNL AUTH O.A.PIERRAT,M.LIU,G.W.COLLIE,K.SHETTY,M.J.RODRIGUES, JRNL AUTH 2 Y.V.LE BIHAN,E.A.GUNNELL,P.C.MCANDREW,M.STUBBS,M.G.ROWLANDS, JRNL AUTH 3 N.YAHYA,E.SHEHU,R.TALBOT,L.PICKARD,B.R.BELLENIE,K.J.CHEUNG, JRNL AUTH 4 L.DROUIN,P.INNOCENTI,H.WOODWARD,O.A.DAVIS,M.G.LLOYD, JRNL AUTH 5 A.VARELA,R.HUCKVALE,F.BROCCATELLI,M.CARTER,D.GALIWANGO, JRNL AUTH 6 A.HAYES,F.I.RAYNAUD,C.BRYANT,S.WHITTAKER,O.W.ROSSANESE, JRNL AUTH 7 S.HOELDER,R.BURKE,R.L.M.VAN MONTFORT JRNL TITL DISCOVERING CELL-ACTIVE BCL6 INHIBITORS: EFFECTIVELY JRNL TITL 2 COMBINING BIOCHEMICAL HTS WITH MULTIPLE BIOPHYSICAL JRNL TITL 3 TECHNIQUES, X-RAY CRYSTALLOGRAPHY AND CELL-BASED ASSAYS. JRNL REF SCI REP V. 12 18633 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 36329085 JRNL DOI 10.1038/S41598-022-23264-Z REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.470 REMARK 3 FREE R VALUE TEST SET COUNT : 715 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 35 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 374 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2095 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 352 REMARK 3 BIN R VALUE (WORKING SET) : 0.2072 REMARK 3 BIN FREE R VALUE : 0.2514 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05140 REMARK 3 B22 (A**2) : -1.05140 REMARK 3 B33 (A**2) : 2.10280 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.250 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.155 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.142 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.136 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.133 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1115 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1508 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 386 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 184 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1115 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 152 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 10 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1431 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|6 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): -40.5456 17.4789 -13.4432 REMARK 3 T TENSOR REMARK 3 T11: -0.0019 T22: 0.0418 REMARK 3 T33: 0.0157 T12: 0.0178 REMARK 3 T13: -0.0069 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 4.0686 L22: 1.5501 REMARK 3 L33: 6.9823 L12: -1.0243 REMARK 3 L13: 3.8579 L23: -1.1333 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.3551 S13: 0.0318 REMARK 3 S21: 0.0161 S22: 0.0313 S23: 0.1045 REMARK 3 S31: -0.1507 S32: -0.5176 S33: -0.0300 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): -23.2479 14.2256 0.2199 REMARK 3 T TENSOR REMARK 3 T11: -0.0182 T22: -0.0232 REMARK 3 T33: -0.0397 T12: 0.0153 REMARK 3 T13: -0.0161 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.7541 L22: 0.8951 REMARK 3 L33: 2.8379 L12: 0.9228 REMARK 3 L13: 2.2978 L23: -1.8572 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.1619 S13: -0.1894 REMARK 3 S21: -0.0892 S22: 0.0050 S23: -0.0710 REMARK 3 S31: -0.0004 S32: -0.0925 S33: -0.0913 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): -24.3155 15.3119 1.4296 REMARK 3 T TENSOR REMARK 3 T11: -0.0792 T22: -0.0663 REMARK 3 T33: -0.1350 T12: 0.0145 REMARK 3 T13: -0.0024 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 5.3995 L22: -0.4959 REMARK 3 L33: 0.7806 L12: 1.1293 REMARK 3 L13: 2.6807 L23: -0.2901 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: -0.4587 S13: -0.0221 REMARK 3 S21: 0.0344 S22: 0.0690 S23: 0.0283 REMARK 3 S31: 0.0987 S32: 0.1165 S33: -0.1712 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 79} REMARK 3 ORIGIN FOR THE GROUP (A): -18.9780 23.7061 -4.9127 REMARK 3 T TENSOR REMARK 3 T11: -0.0374 T22: 0.0196 REMARK 3 T33: -0.0209 T12: -0.0291 REMARK 3 T13: 0.0112 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.1960 L22: 1.6667 REMARK 3 L33: 3.1343 L12: 0.0812 REMARK 3 L13: 0.6114 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: 0.1691 S13: 0.0114 REMARK 3 S21: -0.0625 S22: -0.0022 S23: -0.0519 REMARK 3 S31: -0.1018 S32: 0.2704 S33: -0.0537 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|80 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): -31.5746 22.9876 1.6440 REMARK 3 T TENSOR REMARK 3 T11: -0.0444 T22: -0.0102 REMARK 3 T33: -0.0317 T12: 0.0035 REMARK 3 T13: 0.0017 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 4.9232 L22: 2.7709 REMARK 3 L33: 3.4518 L12: -1.4394 REMARK 3 L13: 1.3783 L23: 3.4336 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.2726 S13: -0.2090 REMARK 3 S21: 0.2126 S22: 0.0231 S23: -0.0165 REMARK 3 S31: 0.2784 S32: 0.0360 S33: -0.0455 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): -38.5408 28.1788 5.3412 REMARK 3 T TENSOR REMARK 3 T11: -0.0100 T22: 0.0875 REMARK 3 T33: -0.0221 T12: -0.0114 REMARK 3 T13: 0.0232 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.8590 L22: 1.5183 REMARK 3 L33: 0.5915 L12: -1.1956 REMARK 3 L13: 1.1710 L23: -1.4205 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.2470 S13: -0.1206 REMARK 3 S21: 0.1284 S22: 0.0379 S23: 0.1063 REMARK 3 S31: 0.0797 S32: -0.0396 S33: 0.0195 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|102 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): -32.0351 36.1335 3.3912 REMARK 3 T TENSOR REMARK 3 T11: -0.0332 T22: -0.0088 REMARK 3 T33: 0.0373 T12: 0.0085 REMARK 3 T13: -0.0061 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 8.3186 L22: 2.5959 REMARK 3 L33: 2.7765 L12: -0.8648 REMARK 3 L13: -1.3836 L23: 2.0219 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: -0.1673 S13: 0.7217 REMARK 3 S21: -0.1747 S22: -0.0791 S23: -0.1615 REMARK 3 S31: -0.3270 S32: -0.0690 S33: 0.0494 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): -27.5035 31.5041 -13.5386 REMARK 3 T TENSOR REMARK 3 T11: -0.0226 T22: 0.0029 REMARK 3 T33: 0.0252 T12: -0.0207 REMARK 3 T13: -0.0593 T23: 0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.5122 L22: 1.9739 REMARK 3 L33: 0.0000 L12: 0.5276 REMARK 3 L13: 0.5051 L23: 0.2429 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0902 S13: 0.0556 REMARK 3 S21: -0.0567 S22: -0.0115 S23: 0.0467 REMARK 3 S31: -0.1204 S32: -0.0050 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {C|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): -49.1975 22.9243 -23.0330 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: 0.0053 REMARK 3 T33: 0.0128 T12: 0.0678 REMARK 3 T13: -0.0595 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.8538 L22: -0.0966 REMARK 3 L33: 0.0000 L12: -2.3997 REMARK 3 L13: 1.9259 L23: 0.7425 REMARK 3 S TENSOR REMARK 3 S11: -0.0558 S12: -0.0346 S13: 0.1912 REMARK 3 S21: 0.0847 S22: 0.0943 S23: -0.0438 REMARK 3 S31: 0.1464 S32: 0.0180 S33: -0.0386 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292122906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-X REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 1.24300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.40100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.80200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.60150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 126.00250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.20050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.40100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 100.80200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 126.00250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.60150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.20050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -25.20050 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 377 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 LEU A 20 CD1 REMARK 470 GLN A 64 CD OE1 NE2 REMARK 470 ARG A 98 NE CZ NH1 NH2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ASP A 119 OD1 REMARK 470 ARG A 122 CZ NH1 NH2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 470 ALA C 0 N CB REMARK 470 ALA C 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 19.41 59.18 REMARK 500 SER A 39 62.09 37.74 REMARK 500 SER A 93 -7.68 82.86 REMARK 500 SER A 93 -7.38 83.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZWN A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7ZWN B 0 5 PDB 7ZWN 7ZWN 0 5 DBREF 7ZWN C 0 5 PDB 7ZWN 7ZWN 0 5 SEQADV 7ZWN GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7ZWN PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7ZWN GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA SEQRES 1 C 6 ALA TRP VAL ILE PRO ALA HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET DMS A 205 4 HET DMS A 206 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 10 HOH *116(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 THR A 62 1 9 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP C 1 VAL C 2 -1 O VAL C 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 35 CRYST1 66.453 66.453 151.203 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015048 0.008688 0.000000 0.00000 SCALE2 0.000000 0.017376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006614 0.00000