HEADER TRANSCRIPTION 19-MAY-22 7ZWU TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, CANCER, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 2 31-JAN-24 7ZWU 1 REMARK REVDAT 1 16-NOV-22 7ZWU 0 JRNL AUTH O.A.PIERRAT,M.LIU,G.W.COLLIE,K.SHETTY,M.J.RODRIGUES, JRNL AUTH 2 Y.V.LE BIHAN,E.A.GUNNELL,P.C.MCANDREW,M.STUBBS,M.G.ROWLANDS, JRNL AUTH 3 N.YAHYA,E.SHEHU,R.TALBOT,L.PICKARD,B.R.BELLENIE,K.J.CHEUNG, JRNL AUTH 4 L.DROUIN,P.INNOCENTI,H.WOODWARD,O.A.DAVIS,M.G.LLOYD, JRNL AUTH 5 A.VARELA,R.HUCKVALE,F.BROCCATELLI,M.CARTER,D.GALIWANGO, JRNL AUTH 6 A.HAYES,F.I.RAYNAUD,C.BRYANT,S.WHITTAKER,O.W.ROSSANESE, JRNL AUTH 7 S.HOELDER,R.BURKE,R.L.M.VAN MONTFORT JRNL TITL DISCOVERING CELL-ACTIVE BCL6 INHIBITORS: EFFECTIVELY JRNL TITL 2 COMBINING BIOCHEMICAL HTS WITH MULTIPLE BIOPHYSICAL JRNL TITL 3 TECHNIQUES, X-RAY CRYSTALLOGRAPHY AND CELL-BASED ASSAYS. JRNL REF SCI REP V. 12 18633 2022 JRNL REFN ESSN 2045-2322 JRNL PMID 36329085 JRNL DOI 10.1038/S41598-022-23264-Z REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 32132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1561 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 643 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2469 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 615 REMARK 3 BIN R VALUE (WORKING SET) : 0.2463 REMARK 3 BIN FREE R VALUE : 0.2627 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 28 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1013 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53500 REMARK 3 B22 (A**2) : -0.53500 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.180 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.061 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.062 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.055 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.057 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1211 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1639 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 440 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 228 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1211 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 161 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 22 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1605 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): 29.2123 -27.4602 12.5690 REMARK 3 T TENSOR REMARK 3 T11: -0.0292 T22: -0.0109 REMARK 3 T33: -0.0365 T12: -0.0123 REMARK 3 T13: 0.0042 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.9045 L22: 0.9830 REMARK 3 L33: 5.2572 L12: 0.9861 REMARK 3 L13: 2.5715 L23: 1.3668 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.1000 S13: -0.0731 REMARK 3 S21: 0.1064 S22: -0.0446 S23: -0.0162 REMARK 3 S31: 0.1451 S32: -0.2897 S33: -0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 41.3174 -14.7133 27.8095 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.1032 REMARK 3 T33: 0.0819 T12: -0.0233 REMARK 3 T13: -0.0258 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 0.4829 L22: 2.7277 REMARK 3 L33: 1.8155 L12: -0.3532 REMARK 3 L13: 0.7526 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: -0.0437 S13: 0.0505 REMARK 3 S21: 0.2289 S22: 0.0964 S23: -0.3563 REMARK 3 S31: -0.1282 S32: 0.0895 S33: -0.1345 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 39.6935 -15.5209 28.9728 REMARK 3 T TENSOR REMARK 3 T11: -0.1003 T22: -0.1081 REMARK 3 T33: -0.1529 T12: -0.0109 REMARK 3 T13: -0.0107 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.2756 L22: 2.0559 REMARK 3 L33: 1.4327 L12: -0.1143 REMARK 3 L13: -0.6195 L23: 1.5273 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.2141 S13: -0.0437 REMARK 3 S21: 0.3189 S22: 0.0508 S23: -0.0261 REMARK 3 S31: -0.0548 S32: 0.1495 S33: -0.0479 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): 33.3211 -10.0451 24.2000 REMARK 3 T TENSOR REMARK 3 T11: -0.0195 T22: -0.0548 REMARK 3 T33: -0.0322 T12: -0.0164 REMARK 3 T13: 0.0157 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.0541 L22: 2.3991 REMARK 3 L33: 1.2491 L12: 1.0098 REMARK 3 L13: -0.1709 L23: 0.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.0662 S12: -0.0167 S13: 0.0478 REMARK 3 S21: 0.0489 S22: -0.0195 S23: -0.0012 REMARK 3 S31: -0.1422 S32: -0.0183 S33: -0.0466 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 22.3114 -22.5511 32.4380 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0084 REMARK 3 T33: -0.0163 T12: -0.0550 REMARK 3 T13: 0.0237 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.5635 L22: 2.6320 REMARK 3 L33: 1.6355 L12: 2.1471 REMARK 3 L13: 2.6493 L23: -1.0638 REMARK 3 S TENSOR REMARK 3 S11: 0.1378 S12: -0.2235 S13: -0.1329 REMARK 3 S21: 0.2223 S22: -0.1714 S23: 0.0718 REMARK 3 S31: 0.2166 S32: 0.1941 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 23.4741 -9.9513 30.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: -0.0254 REMARK 3 T33: 0.0044 T12: -0.0267 REMARK 3 T13: 0.0374 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 3.1660 L22: 5.4466 REMARK 3 L33: 2.3277 L12: 2.9298 REMARK 3 L13: -1.5046 L23: -2.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.2280 S12: -0.1977 S13: 0.2345 REMARK 3 S21: 0.3713 S22: -0.2274 S23: 0.3144 REMARK 3 S31: -0.1634 S32: -0.1383 S33: -0.0006 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): 13.4100 -14.6770 31.4469 REMARK 3 T TENSOR REMARK 3 T11: -0.0109 T22: 0.0343 REMARK 3 T33: 0.0826 T12: -0.0438 REMARK 3 T13: 0.0622 T23: -0.0732 REMARK 3 L TENSOR REMARK 3 L11: 5.8654 L22: 7.7240 REMARK 3 L33: 0.2885 L12: 1.5329 REMARK 3 L13: -1.0221 L23: -1.6263 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.1073 S13: 0.2274 REMARK 3 S21: 0.2831 S22: -0.0108 S23: 0.6867 REMARK 3 S31: 0.1567 S32: -0.2692 S33: 0.1295 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): 19.4936 -31.4529 2.3307 REMARK 3 T TENSOR REMARK 3 T11: -0.0521 T22: 0.0596 REMARK 3 T33: -0.0031 T12: -0.0260 REMARK 3 T13: 0.0039 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 7.4341 L22: -0.4886 REMARK 3 L33: 0.2265 L12: 1.7229 REMARK 3 L13: 0.8503 L23: 2.0817 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: -0.0835 S13: 0.0018 REMARK 3 S21: -0.0358 S22: 0.0363 S23: 0.1856 REMARK 3 S31: 0.0507 S32: 0.0273 S33: -0.1295 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9660 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32153 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 47.667 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.04333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.08667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.56500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.60833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.52167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.04333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.08667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.60833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.56500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.52167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 33.70500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -58.37877 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.52167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 5 N CB REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 ARG A 28 NH2 REMARK 470 GLN A 64 OE1 REMARK 470 GLU A 77 OE1 OE2 REMARK 470 GLU A 99 OE1 OE2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 LYS A 126 CE NZ REMARK 470 GLU A 129 O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 99 N CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -106.18 60.28 REMARK 500 ARG A 40 -12.55 74.30 REMARK 500 SER A 93 -4.67 76.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 K8R A 201 DBREF 7ZWU A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7ZWU B 0 5 PDB 7ZWU 7ZWU 0 5 SEQADV 7ZWU GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7ZWU PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7ZWU GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET K8R A 201 21 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 8 HET EDO A 208 4 HET CL A 209 1 HET DMS A 210 4 HET DMS A 211 4 HETNAM K8R ~{N}-(3-MORPHOLIN-4-YLPROPYL)-2-(NAPHTHALEN-1-YLAMINO)- HETNAM 2 K8R 1,3-THIAZOLE-4-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 K8R C21 H24 N4 O2 S FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 CL CL 1- FORMUL 12 DMS 2(C2 H6 O S) FORMUL 14 HOH *164(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 GLU A 129 1 16 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 CRYST1 67.410 67.410 165.130 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014835 0.008565 0.000000 0.00000 SCALE2 0.000000 0.017130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006056 0.00000