HEADER ENDOCYTOSIS 20-MAY-22 7ZX4 TITLE CLATHRIN N-TERMINAL DOMAIN IN COMPLEX WITH A HURP PHOSPHO-PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLATHRIN HEAVY CHAIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CLATHRIN HEAVY CHAIN ON CHROMOSOME 17,CLH-17; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE ENTRY CORRESPONDS TO THE N-TERMINAL DOMAIN OF COMPND 7 HUMAN CLATHRIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DISKS LARGE-ASSOCIATED PROTEIN 5; COMPND 10 CHAIN: C, D, E; COMPND 11 SYNONYM: DAP-5,DISCS LARGE HOMOLOG 7,DISKS LARGE-ASSOCIATED PROTEIN COMPND 12 DLG7,HEPATOMA UP-REGULATED PROTEIN,HURP; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: THE PEPTIDE SEQUENCE CORRESPONDS TO RESIDUES 826-846 COMPND 15 OF THE HUMAN HEPATOMA-UPREGULATED PROTEIN (HURP), A.K.A. DISK-LARGE COMPND 16 ASSOCIATED PROTEIN 5 (DLGAP5) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLTC, CLH17, CLTCL2, KIAA0034; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM33; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS COMPLEX, PHOSPHO-REGULATED SLIM-BASED INTERACTIONS, HURP, DLGAP5, KEYWDS 2 ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR J.KLICHE,D.BADGUJAR,D.DOBRITZSCH,Y.IVARSSON REVDAT 4 07-FEB-24 7ZX4 1 REMARK REVDAT 3 19-JUL-23 7ZX4 1 JRNL REVDAT 2 07-JUN-23 7ZX4 1 JRNL REVDAT 1 29-MAR-23 7ZX4 0 JRNL AUTH J.KLICHE,D.H.GARVANSKA,L.SIMONETTI,D.BADGUJAR,D.DOBRITZSCH, JRNL AUTH 2 J.NILSSON,N.E.DAVEY,Y.IVARSSON JRNL TITL LARGE-SCALE PHOSPHOMIMETIC SCREENING IDENTIFIES JRNL TITL 2 PHOSPHO-MODULATED MOTIF-BASED PROTEIN INTERACTIONS. JRNL REF MOL.SYST.BIOL. V. 19 11164 2023 JRNL REFN ESSN 1744-4292 JRNL PMID 37219487 JRNL DOI 10.15252/MSB.202211164 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 42817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5955 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5551 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8083 ; 1.440 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12931 ; 1.233 ; 1.569 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 748 ; 7.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;34.574 ;23.724 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;13.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 808 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6605 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1161 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ZX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 43.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1C9I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS PH 7.5, 30 % PEG 6000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.12100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ILE A 4 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 355 REMARK 465 ASN B 356 REMARK 465 LEU B 357 REMARK 465 ALA B 358 REMARK 465 GLY B 359 REMARK 465 ALA B 360 REMARK 465 GLU B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 465 PHE B 364 REMARK 465 TYR C 1 REMARK 465 ARG C 2 REMARK 465 HIS C 3 REMARK 465 ILE C 4 REMARK 465 SER C 5 REMARK 465 PHE C 6 REMARK 465 PRO C 18 REMARK 465 GLY C 19 REMARK 465 GLU C 20 REMARK 465 PHE C 21 REMARK 465 TYR D 1 REMARK 465 ARG D 2 REMARK 465 HIS D 3 REMARK 465 ILE D 4 REMARK 465 SER D 5 REMARK 465 PHE D 6 REMARK 465 PRO D 18 REMARK 465 GLY D 19 REMARK 465 GLU D 20 REMARK 465 PHE D 21 REMARK 465 TYR E 1 REMARK 465 ARG E 2 REMARK 465 HIS E 3 REMARK 465 ILE E 4 REMARK 465 SER E 5 REMARK 465 PHE E 6 REMARK 465 GLY E 7 REMARK 465 LEU E 16 REMARK 465 GLN E 17 REMARK 465 PRO E 18 REMARK 465 GLY E 19 REMARK 465 GLU E 20 REMARK 465 PHE E 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 44 -61.79 -101.54 REMARK 500 ASP A 57 60.64 -153.09 REMARK 500 ASN A 60 61.96 -118.53 REMARK 500 ASP B 57 63.56 -153.28 REMARK 500 ASN B 60 63.14 -117.80 REMARK 500 ALA B 256 46.07 -109.70 REMARK 500 ASN B 296 148.92 -173.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZX4 A 1 364 UNP Q00610 CLH1_HUMAN 1 364 DBREF 7ZX4 B 1 364 UNP Q00610 CLH1_HUMAN 1 364 DBREF 7ZX4 C 1 21 UNP Q15398 DLGP5_HUMAN 826 846 DBREF 7ZX4 D 1 21 UNP Q15398 DLGP5_HUMAN 826 846 DBREF 7ZX4 E 1 21 UNP Q15398 DLGP5_HUMAN 826 846 SEQADV 7ZX4 TYR C 1 UNP Q15398 ALA 826 CONFLICT SEQADV 7ZX4 TYR D 1 UNP Q15398 ALA 826 CONFLICT SEQADV 7ZX4 TYR E 1 UNP Q15398 ALA 826 CONFLICT SEQRES 1 A 364 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 A 364 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 A 364 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 A 364 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 A 364 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 A 364 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 A 364 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 A 364 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 A 364 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 A 364 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 A 364 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 A 364 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 A 364 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 A 364 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 A 364 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 A 364 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 A 364 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 A 364 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 A 364 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 A 364 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 A 364 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 A 364 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 A 364 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 A 364 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 A 364 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 A 364 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 A 364 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 A 364 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU PHE SEQRES 1 B 364 MET ALA GLN ILE LEU PRO ILE ARG PHE GLN GLU HIS LEU SEQRES 2 B 364 GLN LEU GLN ASN LEU GLY ILE ASN PRO ALA ASN ILE GLY SEQRES 3 B 364 PHE SER THR LEU THR MET GLU SER ASP LYS PHE ILE CYS SEQRES 4 B 364 ILE ARG GLU LYS VAL GLY GLU GLN ALA GLN VAL VAL ILE SEQRES 5 B 364 ILE ASP MET ASN ASP PRO SER ASN PRO ILE ARG ARG PRO SEQRES 6 B 364 ILE SER ALA ASP SER ALA ILE MET ASN PRO ALA SER LYS SEQRES 7 B 364 VAL ILE ALA LEU LYS ALA GLY LYS THR LEU GLN ILE PHE SEQRES 8 B 364 ASN ILE GLU MET LYS SER LYS MET LYS ALA HIS THR MET SEQRES 9 B 364 THR ASP ASP VAL THR PHE TRP LYS TRP ILE SER LEU ASN SEQRES 10 B 364 THR VAL ALA LEU VAL THR ASP ASN ALA VAL TYR HIS TRP SEQRES 11 B 364 SER MET GLU GLY GLU SER GLN PRO VAL LYS MET PHE ASP SEQRES 12 B 364 ARG HIS SER SER LEU ALA GLY CYS GLN ILE ILE ASN TYR SEQRES 13 B 364 ARG THR ASP ALA LYS GLN LYS TRP LEU LEU LEU THR GLY SEQRES 14 B 364 ILE SER ALA GLN GLN ASN ARG VAL VAL GLY ALA MET GLN SEQRES 15 B 364 LEU TYR SER VAL ASP ARG LYS VAL SER GLN PRO ILE GLU SEQRES 16 B 364 GLY HIS ALA ALA SER PHE ALA GLN PHE LYS MET GLU GLY SEQRES 17 B 364 ASN ALA GLU GLU SER THR LEU PHE CYS PHE ALA VAL ARG SEQRES 18 B 364 GLY GLN ALA GLY GLY LYS LEU HIS ILE ILE GLU VAL GLY SEQRES 19 B 364 THR PRO PRO THR GLY ASN GLN PRO PHE PRO LYS LYS ALA SEQRES 20 B 364 VAL ASP VAL PHE PHE PRO PRO GLU ALA GLN ASN ASP PHE SEQRES 21 B 364 PRO VAL ALA MET GLN ILE SER GLU LYS HIS ASP VAL VAL SEQRES 22 B 364 PHE LEU ILE THR LYS TYR GLY TYR ILE HIS LEU TYR ASP SEQRES 23 B 364 LEU GLU THR GLY THR CYS ILE TYR MET ASN ARG ILE SER SEQRES 24 B 364 GLY GLU THR ILE PHE VAL THR ALA PRO HIS GLU ALA THR SEQRES 25 B 364 ALA GLY ILE ILE GLY VAL ASN ARG LYS GLY GLN VAL LEU SEQRES 26 B 364 SER VAL CYS VAL GLU GLU GLU ASN ILE ILE PRO TYR ILE SEQRES 27 B 364 THR ASN VAL LEU GLN ASN PRO ASP LEU ALA LEU ARG MET SEQRES 28 B 364 ALA VAL ARG ASN ASN LEU ALA GLY ALA GLU GLU LEU PHE SEQRES 1 C 21 TYR ARG HIS ILE SER PHE GLY GLY ASN LEU ILE THR PHE SEQRES 2 C 21 SEP PRO LEU GLN PRO GLY GLU PHE SEQRES 1 D 21 TYR ARG HIS ILE SER PHE GLY GLY ASN LEU ILE THR PHE SEQRES 2 D 21 SEP PRO LEU GLN PRO GLY GLU PHE SEQRES 1 E 21 TYR ARG HIS ILE SER PHE GLY GLY ASN LEU ILE THR PHE SEQRES 2 E 21 SEP PRO LEU GLN PRO GLY GLU PHE MODRES 7ZX4 SEP C 14 SER MODIFIED RESIDUE MODRES 7ZX4 SEP D 14 SER MODIFIED RESIDUE MODRES 7ZX4 SEP E 14 SER MODIFIED RESIDUE HET SEP C 14 10 HET SEP D 14 10 HET SEP E 14 10 HET GOL A 401 6 HET GOL A 402 6 HET CL A 403 1 HET NA A 404 1 HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SEP 3(C3 H8 N O6 P) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 CL CL 1- FORMUL 9 NA NA 1+ FORMUL 10 HOH *327(H2 O) HELIX 1 AA1 GLN A 16 GLY A 19 5 4 HELIX 2 AA2 ASN A 21 ILE A 25 5 5 HELIX 3 AA3 HIS A 145 ALA A 149 5 5 HELIX 4 AA4 GLU A 310 ALA A 313 5 4 HELIX 5 AA5 ASN A 333 VAL A 341 1 9 HELIX 6 AA6 ASN A 344 ASN A 355 1 12 HELIX 7 AA7 GLN B 16 GLY B 19 5 4 HELIX 8 AA8 ASN B 21 ILE B 25 5 5 HELIX 9 AA9 HIS B 145 ALA B 149 5 5 HELIX 10 AB1 GLU B 310 ALA B 313 5 4 HELIX 11 AB2 ASN B 333 VAL B 341 1 9 HELIX 12 AB3 ASN B 344 ARG B 354 1 11 SHEET 1 AA1 4 ILE A 7 GLN A 14 0 SHEET 2 AA1 4 GLN A 323 VAL A 329 -1 O VAL A 324 N HIS A 12 SHEET 3 AA1 4 GLY A 314 ASN A 319 -1 N ILE A 315 O VAL A 327 SHEET 4 AA1 4 ILE A 303 HIS A 309 -1 N ALA A 307 O ILE A 316 SHEET 1 AA2 4 LEU A 30 SER A 34 0 SHEET 2 AA2 4 PHE A 37 LYS A 43 -1 O CYS A 39 N THR A 31 SHEET 3 AA2 4 ALA A 48 ASP A 54 -1 O GLN A 49 N GLU A 42 SHEET 4 AA2 4 ILE A 62 ILE A 66 -1 O ILE A 62 N ILE A 52 SHEET 1 AA3 4 SER A 70 MET A 73 0 SHEET 2 AA3 4 VAL A 79 ALA A 84 -1 O ALA A 81 N ILE A 72 SHEET 3 AA3 4 THR A 87 ASN A 92 -1 O GLN A 89 N LEU A 82 SHEET 4 AA3 4 SER A 97 THR A 103 -1 O HIS A 102 N LEU A 88 SHEET 1 AA4 4 PHE A 110 TRP A 113 0 SHEET 2 AA4 4 THR A 118 VAL A 122 -1 O ALA A 120 N LYS A 112 SHEET 3 AA4 4 ALA A 126 SER A 131 -1 O TRP A 130 N VAL A 119 SHEET 4 AA4 4 VAL A 139 ASP A 143 -1 O MET A 141 N VAL A 127 SHEET 1 AA5 4 GLN A 152 THR A 158 0 SHEET 2 AA5 4 TRP A 164 GLN A 173 -1 O ILE A 170 N GLN A 152 SHEET 3 AA5 4 ARG A 176 SER A 185 -1 O TYR A 184 N LEU A 165 SHEET 4 AA5 4 VAL A 190 GLU A 195 -1 O ILE A 194 N MET A 181 SHEET 1 AA6 4 ALA A 198 PHE A 204 0 SHEET 2 AA6 4 SER A 213 GLY A 222 -1 O SER A 213 N PHE A 204 SHEET 3 AA6 4 GLY A 225 GLU A 232 -1 O ILE A 231 N PHE A 216 SHEET 4 AA6 4 LYS A 246 VAL A 250 -1 O VAL A 248 N LEU A 228 SHEET 1 AA7 4 PRO A 261 SER A 267 0 SHEET 2 AA7 4 VAL A 272 THR A 277 -1 O ILE A 276 N VAL A 262 SHEET 3 AA7 4 TYR A 281 ASP A 286 -1 O TYR A 285 N VAL A 273 SHEET 4 AA7 4 CYS A 292 ARG A 297 -1 O ILE A 293 N LEU A 284 SHEET 1 AA8 4 ILE B 7 GLN B 14 0 SHEET 2 AA8 4 GLN B 323 VAL B 329 -1 O VAL B 324 N HIS B 12 SHEET 3 AA8 4 GLY B 314 ASN B 319 -1 N ILE B 315 O VAL B 327 SHEET 4 AA8 4 ILE B 303 HIS B 309 -1 N HIS B 309 O GLY B 314 SHEET 1 AA9 4 LEU B 30 SER B 34 0 SHEET 2 AA9 4 PHE B 37 VAL B 44 -1 O CYS B 39 N THR B 31 SHEET 3 AA9 4 GLN B 47 ASP B 54 -1 O GLN B 49 N GLU B 42 SHEET 4 AA9 4 ILE B 62 PRO B 65 -1 O ILE B 62 N ILE B 52 SHEET 1 AB1 4 SER B 70 MET B 73 0 SHEET 2 AB1 4 VAL B 79 ALA B 84 -1 O ALA B 81 N ILE B 72 SHEET 3 AB1 4 THR B 87 ASN B 92 -1 O GLN B 89 N LEU B 82 SHEET 4 AB1 4 SER B 97 THR B 103 -1 O HIS B 102 N LEU B 88 SHEET 1 AB2 4 PHE B 110 TRP B 113 0 SHEET 2 AB2 4 THR B 118 VAL B 122 -1 O ALA B 120 N LYS B 112 SHEET 3 AB2 4 ALA B 126 SER B 131 -1 O TRP B 130 N VAL B 119 SHEET 4 AB2 4 VAL B 139 ASP B 143 -1 O MET B 141 N VAL B 127 SHEET 1 AB3 4 GLN B 152 THR B 158 0 SHEET 2 AB3 4 TRP B 164 GLN B 173 -1 O LEU B 166 N ARG B 157 SHEET 3 AB3 4 ARG B 176 SER B 185 -1 O TYR B 184 N LEU B 165 SHEET 4 AB3 4 VAL B 190 GLU B 195 -1 O ILE B 194 N MET B 181 SHEET 1 AB4 4 ALA B 198 PHE B 204 0 SHEET 2 AB4 4 SER B 213 ARG B 221 -1 O ALA B 219 N ALA B 198 SHEET 3 AB4 4 GLY B 226 GLU B 232 -1 O ILE B 231 N PHE B 216 SHEET 4 AB4 4 LYS B 246 VAL B 250 -1 O VAL B 248 N LEU B 228 SHEET 1 AB5 4 PRO B 261 SER B 267 0 SHEET 2 AB5 4 VAL B 272 THR B 277 -1 O ILE B 276 N VAL B 262 SHEET 3 AB5 4 TYR B 281 ASP B 286 -1 O TYR B 285 N VAL B 273 SHEET 4 AB5 4 CYS B 292 ARG B 297 -1 O ILE B 293 N LEU B 284 LINK C PHE C 13 N SEP C 14 1555 1555 1.34 LINK C SEP C 14 N PRO C 15 1555 1555 1.35 LINK C PHE D 13 N SEP D 14 1555 1555 1.33 LINK C SEP D 14 N PRO D 15 1555 1555 1.35 LINK C PHE E 13 N SEP E 14 1555 1555 1.34 LINK C SEP E 14 N PRO E 15 1555 1555 1.35 LINK NA NA A 404 O HOH A 623 1555 1555 2.66 CRYST1 48.774 94.242 88.981 90.00 103.81 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020503 0.000000 0.005039 0.00000 SCALE2 0.000000 0.010611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011573 0.00000