HEADER TRANSFERASE 25-MAY-22 7ZZH TITLE CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENES IN TITLE 2 COMPLEX WITH A LINEAR DI-ADENOSINE DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: NADK1, LMO0968; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TETRAMERIC NAD-KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GELIN,G.LABESSE REVDAT 2 31-JAN-24 7ZZH 1 REMARK REVDAT 1 11-JAN-23 7ZZH 0 JRNL AUTH D.A.CLEMENT,M.GELIN,C.LESEIGNEUR,V.HUTEAU,L.MONDANGE, JRNL AUTH 2 J.L.PONS,O.DUSSURGET,C.LIONNE,G.LABESSE,S.POCHET JRNL TITL SYNTHESIS AND STRUCTURE-ACTIVITY RELATIONSHIP STUDIES OF JRNL TITL 2 ORIGINAL CYCLIC DIADENOSINE DERIVATIVES AS NANOMOLAR JRNL TITL 3 INHIBITORS OF NAD KINASE FROM PATHOGENIC BACTERIA. JRNL REF EUR.J.MED.CHEM. V. 246 14941 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36455355 JRNL DOI 10.1016/J.EJMECH.2022.114941 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 19165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4000 - 3.8200 0.98 2729 144 0.1783 0.1845 REMARK 3 2 3.8200 - 3.0300 0.99 2638 139 0.1913 0.2821 REMARK 3 3 3.0300 - 2.6500 0.99 2580 136 0.2181 0.2353 REMARK 3 4 2.6500 - 2.4100 0.99 2583 135 0.2133 0.2306 REMARK 3 5 2.4000 - 2.2300 0.99 2594 137 0.2230 0.2825 REMARK 3 6 2.2300 - 2.1000 0.99 2555 134 0.2382 0.2523 REMARK 3 7 2.1000 - 2.0000 0.97 2530 131 0.2673 0.3083 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1148 22.3460 29.0249 REMARK 3 T TENSOR REMARK 3 T11: 0.6069 T22: 0.6407 REMARK 3 T33: 0.3445 T12: 0.0752 REMARK 3 T13: 0.0447 T23: -0.0771 REMARK 3 L TENSOR REMARK 3 L11: 4.3949 L22: 2.6780 REMARK 3 L33: 6.4692 L12: -1.2163 REMARK 3 L13: -1.8617 L23: 0.7393 REMARK 3 S TENSOR REMARK 3 S11: -0.1237 S12: -0.6268 S13: 0.0787 REMARK 3 S21: -0.0139 S22: 0.0932 S23: 0.1852 REMARK 3 S31: -0.3215 S32: 0.1250 S33: 0.1419 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7427 26.0363 18.2623 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.5439 REMARK 3 T33: 0.3587 T12: 0.0330 REMARK 3 T13: 0.0421 T23: -0.1139 REMARK 3 L TENSOR REMARK 3 L11: 4.6082 L22: 2.8941 REMARK 3 L33: 6.3048 L12: -0.8695 REMARK 3 L13: -1.9394 L23: 0.0643 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0361 S13: 0.3620 REMARK 3 S21: 0.0772 S22: -0.0393 S23: 0.3659 REMARK 3 S31: -0.5465 S32: -0.2835 S33: -0.0165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5802 21.7575 26.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.4537 T22: 0.6293 REMARK 3 T33: 0.3899 T12: 0.0350 REMARK 3 T13: 0.0618 T23: -0.0770 REMARK 3 L TENSOR REMARK 3 L11: 4.7734 L22: 1.8651 REMARK 3 L33: 6.8216 L12: -0.8423 REMARK 3 L13: -2.7103 L23: -0.2514 REMARK 3 S TENSOR REMARK 3 S11: -0.3676 S12: -0.9614 S13: 0.1185 REMARK 3 S21: 0.3981 S22: 0.3299 S23: 0.0934 REMARK 3 S31: 0.4327 S32: 0.7977 S33: 0.1090 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0878 18.0167 -1.8054 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.4850 REMARK 3 T33: 0.3825 T12: 0.0984 REMARK 3 T13: 0.0001 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 3.1469 L22: 3.6207 REMARK 3 L33: 3.8050 L12: 0.3375 REMARK 3 L13: -1.3607 L23: 0.8047 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.1152 S13: 0.1225 REMARK 3 S21: -0.2019 S22: -0.3365 S23: 0.6033 REMARK 3 S31: -0.2266 S32: -0.8131 S33: 0.1616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7941 9.4350 -4.4995 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.3596 REMARK 3 T33: 0.2495 T12: 0.0377 REMARK 3 T13: -0.0108 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.0697 L22: 3.2286 REMARK 3 L33: 3.5432 L12: 0.2739 REMARK 3 L13: 0.3112 L23: -0.2855 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.1825 S13: 0.0324 REMARK 3 S21: -0.1830 S22: -0.0328 S23: 0.0994 REMARK 3 S31: 0.1989 S32: 0.1655 S33: 0.0275 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5888 14.2805 -8.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.2799 T22: 0.4609 REMARK 3 T33: 0.3493 T12: 0.0534 REMARK 3 T13: -0.0161 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.7991 L22: 2.5444 REMARK 3 L33: 6.5703 L12: -1.4289 REMARK 3 L13: -0.1025 L23: -0.9755 REMARK 3 S TENSOR REMARK 3 S11: 0.2532 S12: 0.5332 S13: -0.2770 REMARK 3 S21: 0.0399 S22: -0.0298 S23: 0.5101 REMARK 3 S31: 0.2465 S32: -1.0073 S33: -0.0530 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2339 14.9880 -4.2543 REMARK 3 T TENSOR REMARK 3 T11: 0.4015 T22: 0.5918 REMARK 3 T33: 0.5539 T12: 0.0833 REMARK 3 T13: -0.0566 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.6675 L22: 2.1175 REMARK 3 L33: 5.3835 L12: -0.3116 REMARK 3 L13: 1.4196 L23: 0.4853 REMARK 3 S TENSOR REMARK 3 S11: 0.2335 S12: 0.0798 S13: 0.1561 REMARK 3 S21: 0.1907 S22: -0.0783 S23: 0.9384 REMARK 3 S31: 0.1005 S32: -1.2853 S33: -0.0641 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1310 26.6964 15.1396 REMARK 3 T TENSOR REMARK 3 T11: 0.5835 T22: 0.3991 REMARK 3 T33: 0.5436 T12: -0.0194 REMARK 3 T13: 0.0556 T23: -0.1262 REMARK 3 L TENSOR REMARK 3 L11: 3.8910 L22: 2.4801 REMARK 3 L33: 4.6148 L12: -1.5526 REMARK 3 L13: 0.5462 L23: -0.1291 REMARK 3 S TENSOR REMARK 3 S11: -0.3395 S12: -0.6470 S13: 0.7450 REMARK 3 S21: 0.4883 S22: 0.1295 S23: -0.1661 REMARK 3 S31: -0.9190 S32: -0.3111 S33: 0.1737 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7505 12.7568 17.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.3846 T22: 0.4676 REMARK 3 T33: 0.3389 T12: -0.0179 REMARK 3 T13: 0.0265 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 7.1134 L22: 6.1540 REMARK 3 L33: 6.5865 L12: -0.1314 REMARK 3 L13: 0.5408 L23: 0.8335 REMARK 3 S TENSOR REMARK 3 S11: 0.0860 S12: -1.4224 S13: -0.0603 REMARK 3 S21: 0.7906 S22: -0.2787 S23: -0.3965 REMARK 3 S31: 0.2422 S32: -0.0880 S33: -0.0532 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8-5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979256667874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19231 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 37.404 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.58 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.1_4122 REMARK 200 STARTING MODEL: 6RG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NABR, 220 MM KCITRATE, GLYCEROL REMARK 280 6%, 15-16% W/V PEG400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.45400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.38850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.41750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.45400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.38850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.41750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.45400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.38850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.41750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.45400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.38850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.41750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.90800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 62.90800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 265 REMARK 465 GLU A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ILE A 111 CG1 CG2 CD1 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 94 15.85 57.09 REMARK 500 ILE A 111 -83.46 52.28 REMARK 500 LYS A 113 105.88 -170.05 REMARK 500 ASN A 122 -66.00 -100.44 REMARK 500 SER A 129 39.75 -84.41 REMARK 500 ALA A 162 -123.70 -101.35 REMARK 500 ASN A 189 -158.03 -142.40 REMARK 500 HIS A 204 -3.02 71.32 REMARK 500 ASP A 222 -127.49 53.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ZZ7 RELATED DB: PDB DBREF 7ZZH A 1 264 UNP Q8Y8D7 NADK1_LISMO 1 264 SEQADV 7ZZH LEU A 265 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH GLU A 266 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 267 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 268 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 269 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 270 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 271 UNP Q8Y8D7 EXPRESSION TAG SEQADV 7ZZH HIS A 272 UNP Q8Y8D7 EXPRESSION TAG SEQRES 1 A 272 MET LYS TYR MET ILE THR SER LYS GLY ASP GLU LYS SER SEQRES 2 A 272 ASP LEU LEU ARG LEU ASN MET ILE ALA GLY PHE GLY GLU SEQRES 3 A 272 TYR ASP MET GLU TYR ASP ASP VAL GLU PRO GLU ILE VAL SEQRES 4 A 272 ILE SER ILE GLY GLY ASP GLY THR PHE LEU SER ALA PHE SEQRES 5 A 272 HIS GLN TYR GLU GLU ARG LEU ASP GLU ILE ALA PHE ILE SEQRES 6 A 272 GLY ILE HIS THR GLY HIS LEU GLY PHE TYR ALA ASP TRP SEQRES 7 A 272 ARG PRO ALA GLU ALA ASP LYS LEU VAL LYS LEU LEU ALA SEQRES 8 A 272 LYS GLY GLU TYR GLN LYS VAL SER TYR PRO LEU LEU LYS SEQRES 9 A 272 THR THR VAL LYS TYR GLY ILE GLY LYS LYS GLU ALA THR SEQRES 10 A 272 TYR LEU ALA LEU ASN GLU SER THR VAL LYS SER SER GLY SEQRES 11 A 272 GLY PRO PHE VAL VAL ASP VAL VAL ILE ASN ASP ILE HIS SEQRES 12 A 272 PHE GLU ARG PHE ARG GLY ASP GLY LEU CYS MET SER THR SEQRES 13 A 272 PRO SER GLY THR THR ALA TYR ASN LYS SER LEU GLY GLY SEQRES 14 A 272 ALA LEU MET HIS PRO SER ILE GLU ALA MET GLN LEU THR SEQRES 15 A 272 GLU MET ALA SER ILE ASN ASN ARG VAL TYR ARG THR ILE SEQRES 16 A 272 GLY SER PRO LEU VAL PHE PRO LYS HIS HIS VAL VAL SER SEQRES 17 A 272 LEU GLN PRO VAL ASN ASP LYS ASP PHE GLN ILE SER VAL SEQRES 18 A 272 ASP HIS LEU SER ILE LEU HIS ARG ASP VAL GLN GLU ILE SEQRES 19 A 272 ARG TYR GLU VAL SER ALA LYS LYS ILE HIS PHE ALA ARG SEQRES 20 A 272 PHE ARG SER PHE PRO PHE TRP ARG ARG VAL HIS ASP SER SEQRES 21 A 272 PHE ILE GLU ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CIT A 301 13 HET KIO A 302 48 HETNAM CIT CITRIC ACID HETNAM KIO (1~{R},22~{R},23~{S},24~{R})-14-[[(2~{R},3~{S},4~{R}, HETNAM 2 KIO 5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN- HETNAM 3 KIO 2-YL]METHYL]-7-AZANYL-23,24-BIS(OXIDANYL)-25-OXA-2,4, HETNAM 4 KIO 6,9,14,17,20-HEPTAZATETRACYCLO[20.2.1.0^{2,10}.0^{3, HETNAM 5 KIO 8}]PENTACOSA-3(8),4,6,9-TETRAEN-11-YNE-16,19-DIONE FORMUL 2 CIT C6 H8 O7 FORMUL 3 KIO C27 H31 N13 O8 FORMUL 4 HOH *59(H2 O) HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 GLY A 44 TYR A 55 1 12 HELIX 3 AA3 GLU A 56 ILE A 62 5 7 HELIX 4 AA4 ARG A 79 ALA A 81 5 3 HELIX 5 AA5 GLU A 82 GLY A 93 1 12 HELIX 6 AA6 PRO A 157 THR A 161 5 5 HELIX 7 AA7 ALA A 162 LEU A 167 1 6 HELIX 8 AA8 PRO A 252 ILE A 262 1 11 SHEET 1 AA1 4 GLU A 30 TYR A 31 0 SHEET 2 AA1 4 LYS A 2 SER A 7 1 N TYR A 3 O GLU A 30 SHEET 3 AA1 4 ILE A 38 GLY A 43 1 O ILE A 40 N THR A 6 SHEET 4 AA1 4 ALA A 63 HIS A 68 1 O ILE A 67 N SER A 41 SHEET 1 AA2 6 LYS A 114 ALA A 120 0 SHEET 2 AA2 6 GLN A 96 TYR A 109 -1 N VAL A 107 O ALA A 116 SHEET 3 AA2 6 VAL A 231 ARG A 247 -1 O PHE A 245 N VAL A 98 SHEET 4 AA2 6 VAL A 207 PRO A 211 -1 N VAL A 207 O TYR A 236 SHEET 5 AA2 6 PHE A 133 ILE A 139 -1 N VAL A 138 O SER A 208 SHEET 6 AA2 6 ILE A 142 GLY A 149 -1 O GLU A 145 N VAL A 137 SHEET 1 AA3 6 LEU A 199 PRO A 202 0 SHEET 2 AA3 6 ALA A 178 MET A 184 -1 N MET A 179 O PHE A 201 SHEET 3 AA3 6 GLY A 151 SER A 155 -1 N SER A 155 O GLN A 180 SHEET 4 AA3 6 GLU A 123 SER A 128 -1 N SER A 124 O MET A 154 SHEET 5 AA3 6 PHE A 217 VAL A 221 -1 O GLN A 218 N LYS A 127 SHEET 6 AA3 6 LEU A 224 HIS A 228 -1 O LEU A 224 N VAL A 221 CRYST1 62.908 74.777 118.835 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008415 0.00000