HEADER TRANSFERASE 25-MAY-22 7ZZI TITLE PLASMODIUM FALCIPARUM HEXOKINASE COMPLEXED WITH GLUCOSE AND CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM; SOURCE 3 ORGANISM_TAXID: 5820; SOURCE 4 STRAIN: ISOLATE NF54; SOURCE 5 GENE: CK202_5141, PFNF54_05159; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYSIS, HEXOKINASE, PHOSPHOTRANSFERASE, ACTIN-LIKE ATPASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FRITZ-WOLF,M.DILLENBERGER,S.RAHLFS,K.BECKER REVDAT 2 06-SEP-23 7ZZI 1 JRNL REVDAT 1 30-AUG-23 7ZZI 0 JRNL AUTH M.DILLENBERGER,A.D.WERNER,A.S.VELTEN,S.RAHLFS,K.BECKER, JRNL AUTH 2 K.FRITZ-WOLF JRNL TITL STRUCTURAL ANALYSIS OF PLASMODIUM FALCIPARUM HEXOKINASE JRNL TITL 2 PROVIDES NOVEL INFORMATION ABOUT CATALYSIS DUE TO A JRNL TITL 3 PLASMODIUM -SPECIFIC INSERTION. JRNL REF INT J MOL SCI V. 24 2023 JRNL REFN ESSN 1422-0067 JRNL PMID 37628920 JRNL DOI 10.3390/IJMS241612739 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4800 - 7.5900 1.00 1336 149 0.1629 0.1993 REMARK 3 2 7.5800 - 6.0200 1.00 1269 141 0.1931 0.2499 REMARK 3 3 6.0200 - 5.2600 1.00 1260 140 0.1886 0.2685 REMARK 3 4 5.2600 - 4.7800 1.00 1257 139 0.1732 0.2770 REMARK 3 5 4.7800 - 4.4400 1.00 1253 140 0.1686 0.2448 REMARK 3 6 4.4400 - 4.1800 1.00 1227 136 0.1780 0.2344 REMARK 3 7 4.1800 - 3.9700 1.00 1238 138 0.1817 0.2628 REMARK 3 8 3.9700 - 3.7900 1.00 1235 137 0.1812 0.2825 REMARK 3 9 3.7900 - 3.6500 1.00 1236 137 0.1947 0.2712 REMARK 3 10 3.6500 - 3.5200 1.00 1241 138 0.2360 0.3024 REMARK 3 11 3.5200 - 3.4100 1.00 1212 135 0.2475 0.3056 REMARK 3 12 3.4100 - 3.3100 1.00 1240 137 0.2402 0.3152 REMARK 3 13 3.3100 - 3.2300 1.00 1215 135 0.2428 0.3339 REMARK 3 14 3.2300 - 3.1500 1.00 1227 137 0.2423 0.3330 REMARK 3 15 3.1500 - 3.0800 1.00 1245 138 0.2795 0.3763 REMARK 3 16 3.0800 - 3.0100 1.00 1209 134 0.3070 0.3553 REMARK 3 17 3.0100 - 2.9500 1.00 1210 135 0.3100 0.3666 REMARK 3 18 2.9500 - 2.9000 1.00 1220 136 0.3452 0.4040 REMARK 3 19 2.9000 - 2.8400 1.00 1225 136 0.3905 0.4728 REMARK 3 20 2.8400 - 2.8000 0.94 1155 128 0.4722 0.4907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.538 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.659 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7548 REMARK 3 ANGLE : 1.170 10177 REMARK 3 CHIRALITY : 0.060 1108 REMARK 3 PLANARITY : 0.009 1296 REMARK 3 DIHEDRAL : 16.723 2763 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 24 through 486 or REMARK 3 resid 701)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 24 through 486 or REMARK 3 resid 1301)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ZZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1292123307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.4-4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.796 REMARK 200 RESOLUTION RANGE LOW (A) : 49.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.11980 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.41100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6VYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 200 MM SODIUM CITRATE, REMARK 280 0.1 MM SODIUM CITRATE BUFFER (PH 3.4-4.0), 10 MM GLUCOSE, 10 MM REMARK 280 ATP, 5 MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.31000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.62000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.62000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 EDO B 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 608 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 TYR A 4 REMARK 465 ASP A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 9 REMARK 465 ASP A 10 REMARK 465 VAL A 11 REMARK 465 THR A 12 REMARK 465 TYR A 13 REMARK 465 THR A 14 REMARK 465 LYS A 15 REMARK 465 LEU A 16 REMARK 465 ASP A 17 REMARK 465 THR A 18 REMARK 465 ILE A 19 REMARK 465 GLU A 20 REMARK 465 CYS A 21 REMARK 465 ASP A 22 REMARK 465 ILE A 23 REMARK 465 ALA A 487 REMARK 465 ASP A 488 REMARK 465 ILE A 489 REMARK 465 PRO A 490 REMARK 465 GLN A 491 REMARK 465 LEU A 492 REMARK 465 PRO A 493 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 TYR B 4 REMARK 465 ASP B 5 REMARK 465 ILE B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 ASN B 9 REMARK 465 ASP B 10 REMARK 465 VAL B 11 REMARK 465 THR B 12 REMARK 465 TYR B 13 REMARK 465 THR B 14 REMARK 465 LYS B 15 REMARK 465 LEU B 16 REMARK 465 ASP B 17 REMARK 465 THR B 18 REMARK 465 ILE B 19 REMARK 465 GLU B 20 REMARK 465 CYS B 21 REMARK 465 ASP B 22 REMARK 465 PRO B 490 REMARK 465 GLN B 491 REMARK 465 LEU B 492 REMARK 465 PRO B 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 278 O HOH A 601 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLU B 27 OE2 GLU B 461 3664 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 380 CE LYS A 380 NZ 0.258 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 380 CD - CE - NZ ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 139 -124.57 53.47 REMARK 500 ALA A 230 19.56 57.17 REMARK 500 LYS A 283 36.79 74.77 REMARK 500 GLN A 343 -132.67 60.21 REMARK 500 ASN A 366 56.31 -98.84 REMARK 500 SER A 427 -159.81 -173.10 REMARK 500 ALA A 457 -126.05 64.79 REMARK 500 ASN B 107 178.09 177.24 REMARK 500 TYR B 128 75.61 -117.57 REMARK 500 SER B 137 -178.56 73.40 REMARK 500 HIS B 138 -159.96 -77.56 REMARK 500 PHE B 167 21.65 -78.11 REMARK 500 ALA B 230 17.59 58.12 REMARK 500 LYS B 283 32.63 72.83 REMARK 500 GLN B 343 -135.62 56.98 REMARK 500 ASN B 366 53.61 -97.94 REMARK 500 ASN B 371 20.23 49.90 REMARK 500 SER B 427 -164.19 -122.17 REMARK 500 ALA B 457 -121.77 60.31 REMARK 500 REMARK 500 REMARK: NULL DBREF 7ZZI A 1 493 UNP W7JZC2 W7JZC2_PLAFO 1 493 DBREF 7ZZI B 1 493 UNP W7JZC2 W7JZC2_PLAFO 1 493 SEQRES 1 A 493 MET SER GLU TYR ASP ILE ALA LYS ASN ASP VAL THR TYR SEQRES 2 A 493 THR LYS LEU ASP THR ILE GLU CYS ASP ILE PRO ILE ASN SEQRES 3 A 493 GLU GLU LEU SER TRP ARG ILE ASN LYS PHE VAL ASN GLN SEQRES 4 A 493 LEU ARG ILE SER TYR SER THR LEU GLU GLU PHE VAL ASP SEQRES 5 A 493 ASN PHE VAL TYR GLU LEU LYS LYS GLY LEU GLU ALA HIS SEQRES 6 A 493 ARG LYS HIS PRO ASN LEU TRP ILE PRO HIS GLU CYS SER SEQRES 7 A 493 PHE LYS MET LEU ASP SER CYS ILE ALA ASN ILE PRO THR SEQRES 8 A 493 GLY GLN GLU LYS GLY THR TYR TYR ALA ILE ASP PHE GLY SEQRES 9 A 493 GLY THR ASN PHE ARG ALA VAL ARG ALA SER LEU ASP GLY SEQRES 10 A 493 LYS GLY LYS ILE LYS ARG ASP GLN GLU THR TYR SER LEU SEQRES 11 A 493 LYS PHE THR GLY SER TYR SER HIS GLU LYS GLY LEU LEU SEQRES 12 A 493 ASP LYS HIS ALA THR ALA SER GLN LEU PHE ASP HIS PHE SEQRES 13 A 493 ALA GLU ARG ILE LYS TYR ILE MET GLY GLU PHE ASN ASP SEQRES 14 A 493 LEU ASP ASN LYS GLU VAL LYS SER VAL GLY PHE THR PHE SEQRES 15 A 493 SER PHE PRO CYS THR SER PRO SER ILE ASN CYS SER ILE SEQRES 16 A 493 LEU ILE ASP TRP THR LYS GLY PHE GLU THR GLY ARG ALA SEQRES 17 A 493 THR ASN ASP PRO VAL GLU GLY ARG ASP VAL CYS LYS LEU SEQRES 18 A 493 MET ASN ASP ALA PHE VAL ARG ALA ALA ILE PRO ALA LYS SEQRES 19 A 493 VAL CYS CYS VAL LEU ASN ASP ALA VAL GLY THR LEU MET SEQRES 20 A 493 SER CYS ALA TYR GLN LYS GLY ARG GLY THR PRO PRO CYS SEQRES 21 A 493 TYR ILE GLY ILE ILE LEU GLY THR GLY SER ASN GLY CYS SEQRES 22 A 493 TYR TYR GLU PRO GLU TRP LYS LYS TYR LYS TYR ALA GLY SEQRES 23 A 493 LYS ILE ILE ASN ILE GLU PHE GLY ASN PHE ASP LYS ASP SEQRES 24 A 493 LEU PRO THR SER PRO ILE ASP LEU VAL MET ASP TRP TYR SEQRES 25 A 493 SER ALA ASN ARG SER ARG GLN LEU PHE GLU LYS MET ILE SEQRES 26 A 493 SER GLY ALA TYR LEU GLY GLU ILE VAL ARG ARG PHE MET SEQRES 27 A 493 VAL ASN VAL LEU GLN SER ALA CYS SER LYS LYS MET TRP SEQRES 28 A 493 ILE SER ASP SER PHE ASN SER GLU SER GLY SER VAL VAL SEQRES 29 A 493 LEU ASN ASP THR SER LYS ASN PHE GLU ASP SER ARG LYS SEQRES 30 A 493 VAL ALA LYS ALA ALA TRP ASP MET ASP PHE THR ASP GLU SEQRES 31 A 493 GLN ILE TYR VAL LEU ARG LYS ILE CYS GLU ALA VAL TYR SEQRES 32 A 493 ASN ARG SER ALA ALA LEU ALA ALA GLY THR ILE ALA ALA SEQRES 33 A 493 ILE ALA LYS ARG ILE LYS ILE ILE GLU HIS SER LYS PHE SEQRES 34 A 493 THR CYS GLY VAL ASP GLY SER LEU PHE VAL LYS ASN ALA SEQRES 35 A 493 TRP TYR CYS LYS ARG LEU GLN GLU HIS LEU LYS VAL ILE SEQRES 36 A 493 LEU ALA ASP LYS ALA GLU ASN LEU ILE ILE ILE PRO ALA SEQRES 37 A 493 ASP ASP GLY SER GLY LYS GLY ALA ALA ILE THR ALA ALA SEQRES 38 A 493 VAL ILE ALA LEU ASN ALA ASP ILE PRO GLN LEU PRO SEQRES 1 B 493 MET SER GLU TYR ASP ILE ALA LYS ASN ASP VAL THR TYR SEQRES 2 B 493 THR LYS LEU ASP THR ILE GLU CYS ASP ILE PRO ILE ASN SEQRES 3 B 493 GLU GLU LEU SER TRP ARG ILE ASN LYS PHE VAL ASN GLN SEQRES 4 B 493 LEU ARG ILE SER TYR SER THR LEU GLU GLU PHE VAL ASP SEQRES 5 B 493 ASN PHE VAL TYR GLU LEU LYS LYS GLY LEU GLU ALA HIS SEQRES 6 B 493 ARG LYS HIS PRO ASN LEU TRP ILE PRO HIS GLU CYS SER SEQRES 7 B 493 PHE LYS MET LEU ASP SER CYS ILE ALA ASN ILE PRO THR SEQRES 8 B 493 GLY GLN GLU LYS GLY THR TYR TYR ALA ILE ASP PHE GLY SEQRES 9 B 493 GLY THR ASN PHE ARG ALA VAL ARG ALA SER LEU ASP GLY SEQRES 10 B 493 LYS GLY LYS ILE LYS ARG ASP GLN GLU THR TYR SER LEU SEQRES 11 B 493 LYS PHE THR GLY SER TYR SER HIS GLU LYS GLY LEU LEU SEQRES 12 B 493 ASP LYS HIS ALA THR ALA SER GLN LEU PHE ASP HIS PHE SEQRES 13 B 493 ALA GLU ARG ILE LYS TYR ILE MET GLY GLU PHE ASN ASP SEQRES 14 B 493 LEU ASP ASN LYS GLU VAL LYS SER VAL GLY PHE THR PHE SEQRES 15 B 493 SER PHE PRO CYS THR SER PRO SER ILE ASN CYS SER ILE SEQRES 16 B 493 LEU ILE ASP TRP THR LYS GLY PHE GLU THR GLY ARG ALA SEQRES 17 B 493 THR ASN ASP PRO VAL GLU GLY ARG ASP VAL CYS LYS LEU SEQRES 18 B 493 MET ASN ASP ALA PHE VAL ARG ALA ALA ILE PRO ALA LYS SEQRES 19 B 493 VAL CYS CYS VAL LEU ASN ASP ALA VAL GLY THR LEU MET SEQRES 20 B 493 SER CYS ALA TYR GLN LYS GLY ARG GLY THR PRO PRO CYS SEQRES 21 B 493 TYR ILE GLY ILE ILE LEU GLY THR GLY SER ASN GLY CYS SEQRES 22 B 493 TYR TYR GLU PRO GLU TRP LYS LYS TYR LYS TYR ALA GLY SEQRES 23 B 493 LYS ILE ILE ASN ILE GLU PHE GLY ASN PHE ASP LYS ASP SEQRES 24 B 493 LEU PRO THR SER PRO ILE ASP LEU VAL MET ASP TRP TYR SEQRES 25 B 493 SER ALA ASN ARG SER ARG GLN LEU PHE GLU LYS MET ILE SEQRES 26 B 493 SER GLY ALA TYR LEU GLY GLU ILE VAL ARG ARG PHE MET SEQRES 27 B 493 VAL ASN VAL LEU GLN SER ALA CYS SER LYS LYS MET TRP SEQRES 28 B 493 ILE SER ASP SER PHE ASN SER GLU SER GLY SER VAL VAL SEQRES 29 B 493 LEU ASN ASP THR SER LYS ASN PHE GLU ASP SER ARG LYS SEQRES 30 B 493 VAL ALA LYS ALA ALA TRP ASP MET ASP PHE THR ASP GLU SEQRES 31 B 493 GLN ILE TYR VAL LEU ARG LYS ILE CYS GLU ALA VAL TYR SEQRES 32 B 493 ASN ARG SER ALA ALA LEU ALA ALA GLY THR ILE ALA ALA SEQRES 33 B 493 ILE ALA LYS ARG ILE LYS ILE ILE GLU HIS SER LYS PHE SEQRES 34 B 493 THR CYS GLY VAL ASP GLY SER LEU PHE VAL LYS ASN ALA SEQRES 35 B 493 TRP TYR CYS LYS ARG LEU GLN GLU HIS LEU LYS VAL ILE SEQRES 36 B 493 LEU ALA ASP LYS ALA GLU ASN LEU ILE ILE ILE PRO ALA SEQRES 37 B 493 ASP ASP GLY SER GLY LYS GLY ALA ALA ILE THR ALA ALA SEQRES 38 B 493 VAL ILE ALA LEU ASN ALA ASP ILE PRO GLN LEU PRO HET GLC A 501 12 HET CIT A 502 13 HET EDO A 503 4 HET CIT A 504 13 HET EDO A 505 4 HET GLC B 501 12 HET PGE B 502 10 HET EDO B 503 4 HET EDO B 504 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 PGE C6 H14 O4 FORMUL 12 HOH *24(H2 O) HELIX 1 AA1 ASN A 26 GLN A 39 1 14 HELIX 2 AA2 SER A 43 HIS A 68 1 26 HELIX 3 AA3 THR A 148 PHE A 167 1 20 HELIX 4 AA4 ASP A 217 ALA A 229 1 13 HELIX 5 AA5 ASN A 240 GLN A 252 1 13 HELIX 6 AA6 GLU A 292 PHE A 296 5 5 HELIX 7 AA7 SER A 303 TYR A 312 1 10 HELIX 8 AA8 PHE A 321 SER A 326 1 6 HELIX 9 AA9 TYR A 329 GLN A 343 1 15 HELIX 10 AB1 SER A 344 CYS A 346 5 3 HELIX 11 AB2 SER A 347 ILE A 352 5 6 HELIX 12 AB3 ASN A 357 ASN A 366 1 10 HELIX 13 AB4 PHE A 372 ASP A 384 1 13 HELIX 14 AB5 THR A 388 GLU A 425 1 38 HELIX 15 AB6 GLY A 435 LYS A 440 1 6 HELIX 16 AB7 ASN A 441 ALA A 457 1 17 HELIX 17 AB8 ASP A 458 GLU A 461 5 4 HELIX 18 AB9 ASP A 470 ASN A 486 1 17 HELIX 19 AC1 ASN B 26 ARG B 41 1 16 HELIX 20 AC2 SER B 43 HIS B 68 1 26 HELIX 21 AC3 THR B 148 PHE B 167 1 20 HELIX 22 AC4 ASP B 217 ALA B 229 1 13 HELIX 23 AC5 ASN B 240 GLN B 252 1 13 HELIX 24 AC6 PRO B 277 LYS B 280 5 4 HELIX 25 AC7 GLU B 292 PHE B 296 5 5 HELIX 26 AC8 SER B 303 TYR B 312 1 10 HELIX 27 AC9 GLN B 319 SER B 326 1 8 HELIX 28 AD1 SER B 326 GLN B 343 1 18 HELIX 29 AD2 SER B 344 CYS B 346 5 3 HELIX 30 AD3 SER B 347 ILE B 352 5 6 HELIX 31 AD4 ASN B 357 ASN B 366 1 10 HELIX 32 AD5 SER B 369 ASN B 371 5 3 HELIX 33 AD6 PHE B 372 ASP B 384 1 13 HELIX 34 AD7 THR B 388 GLU B 425 1 38 HELIX 35 AD8 GLY B 435 LYS B 440 1 6 HELIX 36 AD9 ASN B 441 ALA B 457 1 17 HELIX 37 AE1 ASP B 458 GLU B 461 5 4 HELIX 38 AE2 ASP B 470 ASN B 486 1 17 SHEET 1 AA1 6 LEU A 82 ASP A 83 0 SHEET 2 AA1 6 ILE A 288 ASN A 290 -1 O ASN A 290 N LEU A 82 SHEET 3 AA1 6 SER A 270 TYR A 275 -1 N TYR A 274 O ILE A 289 SHEET 4 AA1 6 CYS A 260 LEU A 266 -1 N GLY A 263 O CYS A 273 SHEET 5 AA1 6 PHE A 429 ASP A 434 1 O ASP A 434 N LEU A 266 SHEET 6 AA1 6 LEU A 463 PRO A 467 1 O ILE A 464 N CYS A 431 SHEET 1 AA2 5 ILE A 121 SER A 129 0 SHEET 2 AA2 5 ASN A 107 ASP A 116 -1 N PHE A 108 O TYR A 128 SHEET 3 AA2 5 LYS A 95 PHE A 103 -1 N GLY A 96 O LEU A 115 SHEET 4 AA2 5 LYS A 176 PHE A 182 1 O THR A 181 N ILE A 101 SHEET 5 AA2 5 ALA A 233 LEU A 239 1 O LEU A 239 N PHE A 180 SHEET 1 AA3 2 CYS A 186 SER A 190 0 SHEET 2 AA3 2 CYS A 193 LEU A 196 -1 O ILE A 195 N THR A 187 SHEET 1 AA4 6 LEU B 82 ASP B 83 0 SHEET 2 AA4 6 ILE B 288 ASN B 290 -1 O ASN B 290 N LEU B 82 SHEET 3 AA4 6 SER B 270 TYR B 275 -1 N TYR B 274 O ILE B 289 SHEET 4 AA4 6 CYS B 260 LEU B 266 -1 N ILE B 265 O ASN B 271 SHEET 5 AA4 6 PHE B 429 ASP B 434 1 O ASP B 434 N LEU B 266 SHEET 6 AA4 6 LEU B 463 PRO B 467 1 O ILE B 466 N CYS B 431 SHEET 1 AA5 5 ILE B 121 THR B 127 0 SHEET 2 AA5 5 PHE B 108 ASP B 116 -1 N SER B 114 O LYS B 122 SHEET 3 AA5 5 LYS B 95 PHE B 103 -1 N GLY B 96 O LEU B 115 SHEET 4 AA5 5 LYS B 176 PHE B 182 1 O THR B 181 N ILE B 101 SHEET 5 AA5 5 ALA B 233 LEU B 239 1 O CYS B 236 N VAL B 178 SHEET 1 AA6 2 CYS B 186 SER B 190 0 SHEET 2 AA6 2 CYS B 193 LEU B 196 -1 O ILE B 195 N THR B 187 CRYST1 125.240 125.240 120.930 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007985 0.004610 0.000000 0.00000 SCALE2 0.000000 0.009220 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008269 0.00000 MTRIX1 1 -0.993643 0.077811 -0.081360 140.77422 1 MTRIX2 1 -0.032258 -0.889177 -0.456425 19.52432 1 MTRIX3 1 -0.107858 -0.450899 0.886034 11.36131 1