HEADER LIGASE 10-AUG-20 7A0P TITLE NEISSERIA GONORRHOEAE LEUCYL-TRNA SYNTHETASE IN COMPLEX WITH COMPOUND TITLE 2 11I COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LEUCYL-TRNA SYNTHETASE; COMPND 5 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: LEUS, VT05_02036, WHOO_00006, WHOO_00455; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-INHIBITOR COMPLEX, ROSSMANN FOLD, TRNA SYNTHETASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 4 31-JAN-24 7A0P 1 REMARK REVDAT 3 03-FEB-21 7A0P 1 JRNL REVDAT 2 09-DEC-20 7A0P 1 JRNL REVDAT 1 02-DEC-20 7A0P 0 JRNL AUTH D.DE RUYSSCHER,L.PANG,S.M.G.LENDERS,D.CAPPOEN,P.COS, JRNL AUTH 2 J.ROZENSKI,S.V.STRELKOV,S.D.WEEKS,A.VAN AERSCHOT JRNL TITL SYNTHESIS AND STRUCTURE-ACTIVITY STUDIES OF NOVEL JRNL TITL 2 ANHYDROHEXITOL-BASED LEUCYL-TRNA SYNTHETASE INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 211 13021 2021 JRNL REFN ISSN 0223-5234 JRNL PMID 33248851 JRNL DOI 10.1016/J.EJMECH.2020.113021 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9500 - 5.2200 1.00 3503 162 0.1881 0.2165 REMARK 3 2 5.2200 - 4.1600 1.00 3336 153 0.1668 0.2081 REMARK 3 3 4.1600 - 3.6400 1.00 3301 144 0.1754 0.2243 REMARK 3 4 3.6400 - 3.3100 1.00 3276 169 0.1933 0.2133 REMARK 3 5 3.3100 - 3.0700 1.00 3248 145 0.2040 0.2756 REMARK 3 6 3.0700 - 2.8900 1.00 3241 146 0.2080 0.2586 REMARK 3 7 2.8900 - 2.7500 1.00 3259 145 0.2098 0.2762 REMARK 3 8 2.7500 - 2.6300 1.00 3250 144 0.2174 0.2668 REMARK 3 9 2.6300 - 2.5300 1.00 3256 148 0.2180 0.2780 REMARK 3 10 2.5300 - 2.4400 1.00 3200 142 0.2168 0.2700 REMARK 3 11 2.4400 - 2.3600 1.00 3251 119 0.2287 0.3264 REMARK 3 12 2.3600 - 2.2900 1.00 3256 126 0.2330 0.3121 REMARK 3 13 2.2900 - 2.2300 1.00 3206 114 0.2362 0.3420 REMARK 3 14 2.2300 - 2.1800 1.00 3256 138 0.2392 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6477 -11.3052 -38.5168 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.3098 REMARK 3 T33: 0.3114 T12: 0.0397 REMARK 3 T13: -0.0300 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.7568 L22: 2.1353 REMARK 3 L33: 1.1433 L12: 0.7033 REMARK 3 L13: 0.5666 L23: 0.2001 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.0474 S13: -0.1419 REMARK 3 S21: 0.1207 S22: -0.0048 S23: -0.0919 REMARK 3 S31: 0.1273 S32: 0.1123 S33: -0.0651 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0521 13.6871 -24.4692 REMARK 3 T TENSOR REMARK 3 T11: 0.2200 T22: 0.3160 REMARK 3 T33: 0.2383 T12: 0.0088 REMARK 3 T13: -0.0235 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.2392 L22: 0.9421 REMARK 3 L33: 0.5120 L12: 0.0142 REMARK 3 L13: -0.1322 L23: 0.3164 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: -0.0475 S13: -0.0052 REMARK 3 S21: -0.0009 S22: -0.0140 S23: 0.0328 REMARK 3 S31: -0.0710 S32: 0.0552 S33: -0.0135 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8412 33.4091 -10.8868 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.2704 REMARK 3 T33: 0.2931 T12: -0.0004 REMARK 3 T13: 0.0100 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 3.1010 L22: 1.4810 REMARK 3 L33: 3.5796 L12: -0.3293 REMARK 3 L13: 1.3012 L23: -1.5625 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: -0.0756 S13: -0.2883 REMARK 3 S21: -0.0574 S22: 0.0367 S23: 0.0877 REMARK 3 S31: -0.0703 S32: 0.0425 S33: -0.1536 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 362 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5033 17.2351 -28.0346 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.2767 REMARK 3 T33: 0.2604 T12: -0.0225 REMARK 3 T13: -0.0279 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.3655 L22: 0.5666 REMARK 3 L33: 0.6863 L12: 0.0095 REMARK 3 L13: -0.2114 L23: 0.1676 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: 0.0226 S13: 0.0417 REMARK 3 S21: -0.0362 S22: 0.0343 S23: -0.0228 REMARK 3 S31: -0.0507 S32: 0.0487 S33: -0.0288 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 566 THROUGH 644 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7356 -8.3641 -19.5750 REMARK 3 T TENSOR REMARK 3 T11: 0.4107 T22: 0.3208 REMARK 3 T33: 0.2873 T12: 0.0513 REMARK 3 T13: -0.0054 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 3.0469 L22: 2.0590 REMARK 3 L33: 3.0027 L12: 1.3028 REMARK 3 L13: -2.2298 L23: -1.7957 REMARK 3 S TENSOR REMARK 3 S11: -0.2189 S12: -0.2509 S13: -0.3279 REMARK 3 S21: 0.1474 S22: 0.0951 S23: 0.0891 REMARK 3 S31: 0.2876 S32: -0.0573 S33: 0.0196 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 645 THROUGH 817 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9260 -17.6005 -48.9696 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.2143 REMARK 3 T33: 0.2334 T12: -0.0082 REMARK 3 T13: 0.0120 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 1.3796 L22: 1.7451 REMARK 3 L33: 2.5911 L12: 0.2713 REMARK 3 L13: 1.1334 L23: 0.7133 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0360 S13: 0.0340 REMARK 3 S21: -0.0409 S22: 0.0099 S23: 0.1321 REMARK 3 S31: -0.1075 S32: -0.0521 S33: -0.0053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980114 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 19.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.20100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.39100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Q89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HOLO PROTEIN AT 10 MG/ML IN 10 MM TRIS REMARK 280 PH 7, 100 MM NACL, 2.5 MM 2-MERCAPTOETHANOL WAS MIXED WITH 0.1 M REMARK 280 BIS-TRIS PROPANE PH 8.5, 0.1 M MGCL2, 20% W/V PEG 3350 AND A REMARK 280 CRYSTAL SEED STOCK IN A 0.75:1.0:0.25 (V/V) RATIO. THE SEED REMARK 280 STOCK WAS PREPARED IN THE SAME CRYSTALLIZATION BUFFER. SUITABLE REMARK 280 CRYSTALS WERE SOAKED WITH 2 MM SYNTHESIZED COMPOUND 11I IN AN REMARK 280 EQUILVALENT PRECIPITANT SOLUTION SUPPLEMENTED WITH 22% V/V REMARK 280 ETHYLENE GLYCOL., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.50200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.53550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.50200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.53550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PHE A 609 REMARK 465 ASP A 610 REMARK 465 ASP A 611 REMARK 465 LYS A 612 REMARK 465 GLY A 613 REMARK 465 ARG A 614 REMARK 465 PRO A 615 REMARK 465 VAL A 616 REMARK 465 SER A 617 REMARK 465 GLU A 816 REMARK 465 ILE A 817 REMARK 465 GLU A 818 REMARK 465 VAL A 819 REMARK 465 MET A 820 REMARK 465 VAL A 821 REMARK 465 GLN A 822 REMARK 465 VAL A 823 REMARK 465 ASN A 824 REMARK 465 GLY A 825 REMARK 465 LYS A 826 REMARK 465 LEU A 827 REMARK 465 ARG A 828 REMARK 465 GLY A 829 REMARK 465 LYS A 830 REMARK 465 ILE A 831 REMARK 465 THR A 832 REMARK 465 VAL A 833 REMARK 465 ALA A 834 REMARK 465 ALA A 835 REMARK 465 ASP A 836 REMARK 465 ALA A 837 REMARK 465 SER A 838 REMARK 465 LYS A 839 REMARK 465 ALA A 840 REMARK 465 ASP A 841 REMARK 465 LEU A 842 REMARK 465 GLU A 843 REMARK 465 ALA A 844 REMARK 465 ALA A 845 REMARK 465 ALA A 846 REMARK 465 LEU A 847 REMARK 465 ALA A 848 REMARK 465 ASN A 849 REMARK 465 GLU A 850 REMARK 465 GLY A 851 REMARK 465 ALA A 852 REMARK 465 VAL A 853 REMARK 465 LYS A 854 REMARK 465 PHE A 855 REMARK 465 MET A 856 REMARK 465 GLU A 857 REMARK 465 GLY A 858 REMARK 465 LYS A 859 REMARK 465 PRO A 860 REMARK 465 ALA A 861 REMARK 465 LYS A 862 REMARK 465 LYS A 863 REMARK 465 ILE A 864 REMARK 465 ILE A 865 REMARK 465 VAL A 866 REMARK 465 VAL A 867 REMARK 465 PRO A 868 REMARK 465 GLY A 869 REMARK 465 ARG A 870 REMARK 465 LEU A 871 REMARK 465 VAL A 872 REMARK 465 ASN A 873 REMARK 465 ILE A 874 REMARK 465 VAL A 875 REMARK 465 VAL A 876 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 2 OE1 NE2 REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 VAL A 371 CG1 CG2 REMARK 470 ASP A 373 CG OD1 OD2 REMARK 470 ARG A 380 CD NE CZ NH1 NH2 REMARK 470 LYS A 451 CD CE NZ REMARK 470 MET A 475 CG SD CE REMARK 470 GLU A 530 CD OE1 OE2 REMARK 470 LYS A 533 CD CE NZ REMARK 470 ASP A 593 CG OD1 OD2 REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 THR A 608 OG1 CG2 REMARK 470 LYS A 621 CG CD CE NZ REMARK 470 LEU A 625 CG CD1 CD2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 703 CE NZ REMARK 470 VAL A 813 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 132 -62.11 -97.80 REMARK 500 ILE A 549 -69.71 -103.80 REMARK 500 ARG A 736 -60.60 -100.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 449 SG REMARK 620 2 CYS A 452 SG 111.1 REMARK 620 3 CYS A 490 SG 106.0 107.3 REMARK 620 4 CYS A 493 SG 106.4 112.0 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1341 O REMARK 620 2 HOH A1369 O 75.8 REMARK 620 3 HOH A1506 O 78.9 116.8 REMARK 620 4 HOH A1622 O 131.4 66.0 92.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YKL RELATED DB: PDB REMARK 900 RELATED ID: 6YKN RELATED DB: PDB REMARK 900 RELATED ID: 6YKQ RELATED DB: PDB REMARK 900 RELATED ID: 6YKS RELATED DB: PDB REMARK 900 RELATED ID: 6YKT RELATED DB: PDB REMARK 900 RELATED ID: 6YKU RELATED DB: PDB REMARK 900 RELATED ID: 6YKV RELATED DB: PDB REMARK 900 RELATED ID: 6YKW RELATED DB: PDB REMARK 900 RELATED ID: 6YKX RELATED DB: PDB REMARK 900 RELATED ID: 6YKK RELATED DB: PDB DBREF1 7A0P A 1 876 UNP A0A5K1KQ39_NEIGO DBREF2 7A0P A A0A5K1KQ39 3 878 SEQADV 7A0P GLY A 0 UNP A0A5K1KQ3 EXPRESSION TAG SEQADV 7A0P ASN A 454 UNP A0A5K1KQ3 ASP 456 ENGINEERED MUTATION SEQADV 7A0P ILE A 508 UNP A0A5K1KQ3 MET 510 CONFLICT SEQRES 1 A 877 GLY MET GLN GLU HIS TYR GLN PRO ALA ALA ILE GLU PRO SEQRES 2 A 877 ALA ALA GLN LYS LYS TRP ASP ASP ALA ARG ILE SER ASN SEQRES 3 A 877 VAL SER GLU ASP ALA SER LYS PRO LYS TYR TYR CYS LEU SEQRES 4 A 877 SER MET PHE PRO TYR PRO SER GLY LYS LEU HIS MET GLY SEQRES 5 A 877 HIS VAL ARG ASN TYR THR ILE GLY ASP VAL LEU SER ARG SEQRES 6 A 877 PHE LYS LEU LEU ASN GLY PHE ASN VAL MET GLN PRO MET SEQRES 7 A 877 GLY TRP ASP ALA PHE GLY MET PRO ALA GLU ASN ALA ALA SEQRES 8 A 877 MET LYS ASN ASN VAL ALA PRO ALA ALA TRP THR TYR ASP SEQRES 9 A 877 ASN ILE GLU TYR MET LYS THR GLN LEU LYS SER LEU GLY SEQRES 10 A 877 PHE ALA VAL ASP TRP GLU ARG GLU VAL ALA THR CYS LYS SEQRES 11 A 877 PRO GLU TYR TYR ARG TRP GLU GLN TRP LEU PHE THR LYS SEQRES 12 A 877 LEU PHE GLU LYS GLY ILE VAL TYR ARG LYS ASN GLY THR SEQRES 13 A 877 VAL ASN TRP ASP PRO VAL ASP GLN THR VAL LEU ALA ASN SEQRES 14 A 877 GLU GLN VAL ILE ASP GLY ARG GLY TRP ARG SER GLY ALA SEQRES 15 A 877 LEU ILE GLU LYS ARG GLU ILE PRO MET TYR TYR PHE LYS SEQRES 16 A 877 ILE THR ASP TYR ALA GLU GLU LEU LEU ASN ASP LEU ASP SEQRES 17 A 877 LYS LEU GLU HIS TRP PRO GLU GLN VAL LYS THR MET GLN SEQRES 18 A 877 ARG ASN TRP ILE GLY LYS SER ARG GLY MET THR VAL ARG SEQRES 19 A 877 PHE ALA VAL SER ASP ASP SER LYS GLN GLY LEU GLU GLY SEQRES 20 A 877 ASP TYR ALA LYS PHE LEU GLN VAL TYR THR THR ARG PRO SEQRES 21 A 877 ASP THR LEU MET GLY ALA THR TYR VAL ALA VAL ALA ALA SEQRES 22 A 877 GLU HIS PRO LEU ALA THR ALA ALA ALA ALA ASP LYS PRO SEQRES 23 A 877 GLU LEU GLN ALA PHE ILE ALA GLU CYS LYS ALA GLY SER SEQRES 24 A 877 VAL ALA GLU ALA ASP MET ALA THR MET GLU LYS LYS GLY SEQRES 25 A 877 VAL PRO THR GLY ARG TYR VAL VAL ASN PRO LEU ASN GLY SEQRES 26 A 877 ASP LYS LEU GLU VAL TRP ILE ALA ASN TYR VAL LEU TRP SEQRES 27 A 877 GLY TYR GLY ASP GLY ALA VAL MET ALA VAL PRO ALA HIS SEQRES 28 A 877 ASP GLU ARG ASP PHE GLU PHE ALA ALA LYS TYR ASN LEU SEQRES 29 A 877 PRO LYS LYS GLN VAL ILE ALA VAL GLY ASP ASN ALA PHE SEQRES 30 A 877 ASP ALA ASN ARG TRP GLN GLU TRP TYR GLY ASP LYS GLU SEQRES 31 A 877 ASN GLY VAL LEU VAL ASN SER GLY ASP LEU ASP GLY LEU SEQRES 32 A 877 ASP PHE GLN THR ALA PHE ASP ALA VAL ALA ALA LYS LEU SEQRES 33 A 877 GLN SER GLN GLY ALA GLY GLU PRO LYS THR GLN TYR ARG SEQRES 34 A 877 LEU ARG ASP TRP GLY ILE SER ARG GLN ARG TYR TRP GLY SEQRES 35 A 877 CYS PRO ILE PRO ILE VAL HIS CYS GLU LYS CYS GLY ASN SEQRES 36 A 877 VAL PRO VAL PRO ALA ASP GLN LEU PRO VAL VAL LEU PRO SEQRES 37 A 877 GLU ASN VAL VAL PRO ASP GLY MET GLY SER PRO LEU ALA SEQRES 38 A 877 LYS MET PRO GLU PHE TYR GLU THR SER CYS PRO CYS CYS SEQRES 39 A 877 GLY GLY ALA ALA LYS ARG GLU THR ASP THR MET ASP THR SEQRES 40 A 877 PHE ILE GLU SER SER TRP TYR PHE PHE ARG TYR MET SER SEQRES 41 A 877 PRO LYS PHE SER ASP GLY MET VAL SER ALA GLU SER ALA SEQRES 42 A 877 LYS TYR TRP GLY ALA VAL ASP GLN TYR ILE GLY GLY ILE SEQRES 43 A 877 GLU HIS ALA ILE LEU HIS LEU LEU TYR ALA ARG PHE PHE SEQRES 44 A 877 THR LYS LEU MET ARG ASP GLU GLY LEU VAL ASN VAL ASP SEQRES 45 A 877 GLU PRO PHE GLU ARG LEU LEU THR GLN GLY MET VAL VAL SEQRES 46 A 877 CYS GLU THR TYR TYR ARG GLU ASN ASP LYS GLY GLY LYS SEQRES 47 A 877 ASP TRP ILE ASN PRO ALA ASP VAL GLU LEU THR PHE ASP SEQRES 48 A 877 ASP LYS GLY ARG PRO VAL SER ALA VAL LEU LYS ALA ASP SEQRES 49 A 877 GLY LEU PRO VAL VAL ILE SER GLY THR GLU LYS MET SER SEQRES 50 A 877 LYS SER LYS ASN ASN GLY VAL ASP PRO GLN GLU LEU ILE SEQRES 51 A 877 ASN ALA TYR GLY ALA ASP THR ALA ARG LEU PHE MET MET SEQRES 52 A 877 PHE ALA ALA PRO PRO GLU GLN SER LEU GLU TRP SER ASP SEQRES 53 A 877 SER GLY VAL GLU GLY ALA HIS ARG PHE LEU ARG ARG LEU SEQRES 54 A 877 TRP ARG THR VAL TYR GLU TYR LEU LYS GLN GLY GLY ALA SEQRES 55 A 877 VAL LYS ALA PHE ALA GLY ASN GLN ASP GLY LEU SER LYS SEQRES 56 A 877 GLU LEU LYS ASP LEU ARG HIS LYS LEU HIS SER THR THR SEQRES 57 A 877 ALA LYS VAL SER ASP ASP TYR GLY ARG ARG GLN GLN PHE SEQRES 58 A 877 ASN THR ALA ILE ALA ALA VAL MET GLU LEU LEU ASN GLN SEQRES 59 A 877 TYR ASP LYS THR ASP THR GLY SER GLU GLN GLY ARG ALA SEQRES 60 A 877 VAL ALA GLN GLU VAL LEU GLU ALA ALA VAL ARG LEU LEU SEQRES 61 A 877 TRP PRO ILE VAL PRO HIS ILE CYS GLU THR LEU TRP SER SEQRES 62 A 877 GLU LEU ASN GLY ALA LYS LEU TRP GLU ALA GLY TRP PRO SEQRES 63 A 877 THR VAL ASP GLU ALA ALA LEU VAL LYS SER GLU ILE GLU SEQRES 64 A 877 VAL MET VAL GLN VAL ASN GLY LYS LEU ARG GLY LYS ILE SEQRES 65 A 877 THR VAL ALA ALA ASP ALA SER LYS ALA ASP LEU GLU ALA SEQRES 66 A 877 ALA ALA LEU ALA ASN GLU GLY ALA VAL LYS PHE MET GLU SEQRES 67 A 877 GLY LYS PRO ALA LYS LYS ILE ILE VAL VAL PRO GLY ARG SEQRES 68 A 877 LEU VAL ASN ILE VAL VAL HET EDO A1201 4 HET ZN A1202 1 HET EDO A1203 4 HET EDO A1204 4 HET QTW A1205 40 HET MG A1206 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETNAM QTW [(2~{R},3~{S},4~{S},5~{R})-3,4-BIS(OXIDANYL)-5-[3-[4- HETNAM 2 QTW [(~{E})-PHENYLCARBONYLIMINOMETHYL]-1,2,3-TRIAZOL-1- HETNAM 3 QTW YL]PROPYL]OXAN-2-YL]METHYL ~{N}-[(2~{S})-2-AZANYL-4- HETNAM 4 QTW METHYL-PENTANOYL]SULFAMATE HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 3 ZN ZN 2+ FORMUL 6 QTW C25 H38 N6 O8 S FORMUL 7 MG MG 2+ FORMUL 8 HOH *357(H2 O) HELIX 1 AA1 GLN A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 ASN A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 94 1 12 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 LYS A 129 LYS A 146 1 18 HELIX 7 AA7 ALA A 167 GLU A 169 5 3 HELIX 8 AA8 ILE A 195 ASP A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 ASP A 238 LYS A 241 5 4 HELIX 13 AB4 GLU A 245 ALA A 249 5 5 HELIX 14 AB5 ARG A 258 ALA A 265 5 8 HELIX 15 AB6 HIS A 274 ALA A 282 1 9 HELIX 16 AB7 LYS A 284 GLY A 297 1 14 HELIX 17 AB8 ALA A 300 MET A 304 5 5 HELIX 18 AB9 ASP A 351 ASN A 362 1 12 HELIX 19 AC1 GLN A 382 ASP A 387 5 6 HELIX 20 AC2 SER A 396 ASP A 400 5 5 HELIX 21 AC3 ASP A 403 GLN A 418 1 16 HELIX 22 AC4 PRO A 458 LEU A 462 5 5 HELIX 23 AC5 SER A 477 LYS A 481 5 5 HELIX 24 AC6 MET A 482 TYR A 486 1 5 HELIX 25 AC7 ILE A 508 SER A 511 5 4 HELIX 26 AC8 TRP A 512 TYR A 517 1 6 HELIX 27 AC9 SER A 528 GLY A 536 1 9 HELIX 28 AD1 GLU A 546 ALA A 548 5 3 HELIX 29 AD2 ILE A 549 GLY A 566 1 18 HELIX 30 AD3 ASN A 601 ALA A 603 5 3 HELIX 31 AD4 ASP A 644 GLY A 653 1 10 HELIX 32 AD5 GLY A 653 ALA A 665 1 13 HELIX 33 AD6 SER A 674 LYS A 697 1 24 HELIX 34 AD7 SER A 713 ARG A 736 1 24 HELIX 35 AD8 GLN A 739 LYS A 756 1 18 HELIX 36 AD9 SER A 761 TRP A 780 1 20 HELIX 37 AE1 VAL A 783 ASN A 795 1 13 HELIX 38 AE2 LYS A 798 GLY A 803 1 6 HELIX 39 AE3 ASP A 808 VAL A 813 5 6 SHEET 1 AA1 4 ASN A 72 MET A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O MET A 74 SHEET 3 AA1 4 VAL A 538 GLY A 544 1 O GLN A 540 N LEU A 38 SHEET 4 AA1 4 PHE A 574 GLN A 580 1 O LEU A 578 N TYR A 541 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 VAL A 125 ALA A 126 1 O VAL A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 LEU A 166 0 SHEET 2 AA3 4 VAL A 149 ASP A 159 -1 N ASP A 159 O THR A 164 SHEET 3 AA3 4 GLU A 184 PHE A 193 -1 O GLU A 184 N TRP A 158 SHEET 4 AA3 4 TRP A 432 GLY A 433 -1 O TRP A 432 N PHE A 193 SHEET 1 AA4 2 VAL A 171 ILE A 172 0 SHEET 2 AA4 2 ARG A 175 GLY A 176 -1 O ARG A 175 N ILE A 172 SHEET 1 AA5 6 PHE A 251 THR A 256 0 SHEET 2 AA5 6 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA5 6 GLY A 311 VAL A 319 -1 O VAL A 319 N ALA A 235 SHEET 4 AA5 6 LYS A 326 ALA A 332 -1 O LEU A 327 N VAL A 318 SHEET 5 AA5 6 TYR A 267 VAL A 270 1 N VAL A 270 O TRP A 330 SHEET 6 AA5 6 ALA A 343 ALA A 346 -1 O VAL A 344 N ALA A 269 SHEET 1 AA6 3 PHE A 251 THR A 256 0 SHEET 2 AA6 3 LYS A 226 VAL A 236 -1 N PHE A 234 O LEU A 252 SHEET 3 AA6 3 GLY A 421 TYR A 427 -1 O GLN A 426 N SER A 227 SHEET 1 AA7 2 ILE A 369 ALA A 370 0 SHEET 2 AA7 2 VAL A 392 LEU A 393 -1 O VAL A 392 N ALA A 370 SHEET 1 AA8 2 SER A 435 ARG A 436 0 SHEET 2 AA8 2 THR A 503 MET A 504 -1 O THR A 503 N ARG A 436 SHEET 1 AA9 4 GLY A 453 PRO A 456 0 SHEET 2 AA9 4 ILE A 446 CYS A 449 -1 N VAL A 447 O VAL A 455 SHEET 3 AA9 4 ALA A 496 ARG A 499 -1 O LYS A 498 N HIS A 448 SHEET 4 AA9 4 GLU A 487 SER A 489 -1 N THR A 488 O ALA A 497 SHEET 1 AB1 3 LYS A 597 ILE A 600 0 SHEET 2 AB1 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AB1 3 VAL A 628 LYS A 634 -1 O SER A 630 N THR A 587 SHEET 1 AB2 3 LYS A 597 ILE A 600 0 SHEET 2 AB2 3 VAL A 583 GLU A 591 -1 N TYR A 588 O ILE A 600 SHEET 3 AB2 3 LEU A 671 GLU A 672 1 O LEU A 671 N VAL A 584 SHEET 1 AB3 2 VAL A 605 GLU A 606 0 SHEET 2 AB3 2 VAL A 619 LEU A 620 -1 O VAL A 619 N GLU A 606 LINK SG CYS A 449 ZN ZN A1202 1555 1555 2.45 LINK SG CYS A 452 ZN ZN A1202 1555 1555 2.35 LINK SG CYS A 490 ZN ZN A1202 1555 1555 2.36 LINK SG CYS A 493 ZN ZN A1202 1555 1555 2.37 LINK MG MG A1206 O HOH A1341 1555 1555 2.40 LINK MG MG A1206 O HOH A1369 1555 1555 2.15 LINK MG MG A1206 O HOH A1506 1555 3454 2.32 LINK MG MG A1206 O HOH A1622 1555 1555 2.26 CISPEP 1 LEU A 462 PRO A 463 0 2.98 CRYST1 49.004 81.071 225.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004442 0.00000