HEADER LIGASE 12-AUG-20 7A1E TITLE LPPS WITH COVALENT ADDUCT DERIVED FROM 1C COMPND MOL_ID: 1; COMPND 2 MOLECULE: L,D-TRANSPEPTIDASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LDT 2,LDT(MT2); COMPND 5 EC: 2.3.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE CONSTRUCT USED HERE CONTAINS TWO DOMAINS: DOMAIN-B COMPND 8 (IG-LIKE) AND DOMAIN-C (CATALYTIC TRANSPEPTIDASE DOMAIN), RESIDUE COMPND 9 RANGE 149-408 OF THE FULL LENGTH PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: LDTB, LPPS, RV2518C, RVBD_2518C, P425_02624; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSPEPTIDASE, CELL WALL, PEPTIDOGLYCAN, ANTIBIOTIC, BETA-LACTAM, KEYWDS 2 COVALENT INHIBITOR, MYCOBACTERIUM TUBERCULOSIS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SCHNELL,E.M.STEINER REVDAT 3 31-JAN-24 7A1E 1 REMARK REVDAT 2 29-SEP-21 7A1E 1 JRNL REVDAT 1 21-APR-21 7A1E 0 JRNL AUTH G.MARTELLI,T.B.PESSATTI,E.M.STEINER,M.CIRILLO,C.CASO, JRNL AUTH 2 F.BISOGNIN,M.LANDREH,P.D.MONTE,D.GIACOMINI,R.SCHNELL JRNL TITL N-THIO-BETA-LACTAMS TARGETING L,D-TRANSPEPTIDASE-2, WITH JRNL TITL 2 ACTIVITY AGAINST DRUG-RESISTANT STRAINS OF MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS. JRNL REF CELL CHEM BIOL V. 28 1321 2021 JRNL REFN ESSN 2451-9456 JRNL PMID 33826941 JRNL DOI 10.1016/J.CHEMBIOL.2021.03.008 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2236 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 545 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.20000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4129 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3739 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5643 ; 1.699 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8585 ; 1.036 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 5.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;33.064 ;24.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;12.639 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4805 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 975 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7A1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82656 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS (VFM, HFM) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45504 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 25.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5LBG REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 0.1 M NA-CITRATE PH REMARK 280 4.25 / 17.5% PEG 6K THE LIGAND WAS ADDED TO THE SOAKING SOLUTION REMARK 280 AT 4 MM CONCENTRATION. IN THE SOAKING DROP, CITRATE IS REPLACED REMARK 280 BY ACETATE (0.3 M) 150 MM NACL 0.1 M BIS-TRIS PH 6.2 0.3 M NA- REMARK 280 ACETATE PH 5.2 25% PEG 6K PEG 6K INCREASED TO 25% FOR CRYO- REMARK 280 PROTECTION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.43650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OXT ALA B 408 O HOH B 601 1.72 REMARK 500 NE2 HIS B 300 OD1 ASP B 321 1.91 REMARK 500 O ALA B 408 O HOH B 602 1.96 REMARK 500 OG SER B 314 O HOH B 603 1.97 REMARK 500 OG1 THR A 384 O HOH A 601 2.03 REMARK 500 O HOH B 836 O HOH B 843 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 659 O HOH B 818 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 204 -171.91 -170.47 REMARK 500 ASN A 313 59.02 -94.37 REMARK 500 HIS A 347 -50.94 -137.04 REMARK 500 ASN A 405 36.77 -147.36 REMARK 500 MET B 280 -166.05 -102.25 REMARK 500 HIS B 347 -51.66 -135.75 REMARK 500 ASN B 405 40.66 -146.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 876 DISTANCE = 6.46 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A10 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 7A11 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 7A0Z RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 7A1C RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND DBREF 7A1E A 150 408 UNP I6Y9J2 LDT2_MYCTU 150 408 DBREF 7A1E B 150 408 UNP I6Y9J2 LDT2_MYCTU 150 408 SEQRES 1 A 259 HIS LEU THR MET PRO TYR VAL MET PRO GLY ASP GLY GLU SEQRES 2 A 259 VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP SEQRES 3 A 259 GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE SEQRES 4 A 259 LYS ILE THR THR ASN PRO PRO VAL GLU GLY ALA PHE TYR SEQRES 5 A 259 TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS SEQRES 6 A 259 PHE TRP LYS PRO GLY THR ALA VAL ASP VAL ALA VAL ASN SEQRES 7 A 259 THR TYR GLY VAL ASP LEU GLY GLU GLY MET PHE GLY GLU SEQRES 8 A 259 ASP ASN VAL GLN THR HIS PHE THR ILE GLY ASP GLU VAL SEQRES 9 A 259 ILE ALA THR ALA ASP ASP ASN THR LYS ILE LEU THR VAL SEQRES 10 A 259 ARG VAL ASN GLY GLU VAL VAL LYS SER MET PRO THR SER SEQRES 11 A 259 MET GLY LYS ASP SER THR PRO THR ALA ASN GLY ILE TYR SEQRES 12 A 259 ILE VAL GLY SER ARG TYR LYS HIS ILE ILE MET ASP SER SEQRES 13 A 259 SER THR TYR GLY VAL PRO VAL ASN SER PRO ASN GLY TYR SEQRES 14 A 259 ARG THR ASP VAL ASP TRP ALA THR GLN ILE SER TYR SER SEQRES 15 A 259 GLY VAL PHE VAL HIS SER ALA PRO TRP SER VAL GLY ALA SEQRES 16 A 259 GLN GLY HIS THR ASN THR SER HIS GLY CYS LEU ASN VAL SEQRES 17 A 259 SER PRO SER ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS SEQRES 18 A 259 ARG GLY ASP ILE VAL GLU VAL VAL ASN THR VAL GLY GLY SEQRES 19 A 259 THR LEU PRO GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE SEQRES 20 A 259 PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA LYS ALA SEQRES 1 B 259 HIS LEU THR MET PRO TYR VAL MET PRO GLY ASP GLY GLU SEQRES 2 B 259 VAL VAL GLY VAL GLY GLU PRO VAL ALA ILE ARG PHE ASP SEQRES 3 B 259 GLU ASN ILE ALA ASP ARG GLY ALA ALA GLU LYS ALA ILE SEQRES 4 B 259 LYS ILE THR THR ASN PRO PRO VAL GLU GLY ALA PHE TYR SEQRES 5 B 259 TRP LEU ASN ASN ARG GLU VAL ARG TRP ARG PRO GLU HIS SEQRES 6 B 259 PHE TRP LYS PRO GLY THR ALA VAL ASP VAL ALA VAL ASN SEQRES 7 B 259 THR TYR GLY VAL ASP LEU GLY GLU GLY MET PHE GLY GLU SEQRES 8 B 259 ASP ASN VAL GLN THR HIS PHE THR ILE GLY ASP GLU VAL SEQRES 9 B 259 ILE ALA THR ALA ASP ASP ASN THR LYS ILE LEU THR VAL SEQRES 10 B 259 ARG VAL ASN GLY GLU VAL VAL LYS SER MET PRO THR SER SEQRES 11 B 259 MET GLY LYS ASP SER THR PRO THR ALA ASN GLY ILE TYR SEQRES 12 B 259 ILE VAL GLY SER ARG TYR LYS HIS ILE ILE MET ASP SER SEQRES 13 B 259 SER THR TYR GLY VAL PRO VAL ASN SER PRO ASN GLY TYR SEQRES 14 B 259 ARG THR ASP VAL ASP TRP ALA THR GLN ILE SER TYR SER SEQRES 15 B 259 GLY VAL PHE VAL HIS SER ALA PRO TRP SER VAL GLY ALA SEQRES 16 B 259 GLN GLY HIS THR ASN THR SER HIS GLY CYS LEU ASN VAL SEQRES 17 B 259 SER PRO SER ASN ALA GLN TRP PHE TYR ASP HIS VAL LYS SEQRES 18 B 259 ARG GLY ASP ILE VAL GLU VAL VAL ASN THR VAL GLY GLY SEQRES 19 B 259 THR LEU PRO GLY ILE ASP GLY LEU GLY ASP TRP ASN ILE SEQRES 20 B 259 PRO TRP ASP GLN TRP ARG ALA GLY ASN ALA LYS ALA HET SDQ A 501 8 HET ACT A 502 4 HET ACT A 503 4 HET ACT B 501 4 HET ACT B 502 4 HETNAM SDQ PHENYLMETHANETHIOL HETNAM ACT ACETATE ION FORMUL 3 SDQ C7 H8 S FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 8 HOH *545(H2 O) HELIX 1 AA1 ASP A 180 ALA A 187 1 8 HELIX 2 AA2 SER A 306 GLY A 309 5 4 HELIX 3 AA3 PRO A 339 VAL A 342 5 4 HELIX 4 AA4 SER A 358 VAL A 369 1 12 HELIX 5 AA5 GLY A 392 ILE A 396 5 5 HELIX 6 AA6 PRO A 397 GLY A 404 1 8 HELIX 7 AA7 ASP B 180 ALA B 187 1 8 HELIX 8 AA8 SER B 306 GLY B 309 5 4 HELIX 9 AA9 PRO B 339 VAL B 342 5 4 HELIX 10 AB1 SER B 358 VAL B 369 1 12 HELIX 11 AB2 GLY B 392 ILE B 396 5 5 HELIX 12 AB3 PRO B 397 GLY B 404 1 8 SHEET 1 AA1 2 LEU A 151 THR A 152 0 SHEET 2 AA1 2 PHE A 238 GLY A 239 1 O PHE A 238 N THR A 152 SHEET 1 AA2 4 PRO A 154 MET A 157 0 SHEET 2 AA2 4 VAL A 170 PHE A 174 -1 O ALA A 171 N MET A 157 SHEET 3 AA2 4 GLU A 207 PRO A 212 -1 O TRP A 210 N VAL A 170 SHEET 4 AA2 4 GLY A 198 ASN A 204 -1 N TYR A 201 O ARG A 209 SHEET 1 AA3 4 VAL A 163 VAL A 164 0 SHEET 2 AA3 4 VAL A 243 ILE A 249 1 O THR A 248 N VAL A 164 SHEET 3 AA3 4 ALA A 221 VAL A 226 -1 N VAL A 224 O THR A 245 SHEET 4 AA3 4 ILE A 188 ASN A 193 -1 N THR A 191 O ASP A 223 SHEET 1 AA4 5 GLU A 271 PRO A 277 0 SHEET 2 AA4 5 ILE A 263 VAL A 268 -1 N LEU A 264 O MET A 276 SHEET 3 AA4 5 VAL A 253 ASP A 258 -1 N THR A 256 O THR A 265 SHEET 4 AA4 5 ILE A 374 VAL A 378 1 O ILE A 374 N ALA A 255 SHEET 5 AA4 5 GLY A 290 ILE A 293 -1 N TYR A 292 O VAL A 375 SHEET 1 AA5 4 ARG A 297 ASP A 304 0 SHEET 2 AA5 4 ARG A 319 GLN A 327 -1 O THR A 320 N MET A 303 SHEET 3 AA5 4 PHE A 334 SER A 337 -1 O VAL A 335 N THR A 326 SHEET 4 AA5 4 LEU A 355 VAL A 357 1 O LEU A 355 N PHE A 334 SHEET 1 AA6 2 LEU B 151 THR B 152 0 SHEET 2 AA6 2 PHE B 238 GLY B 239 1 O PHE B 238 N THR B 152 SHEET 1 AA7 4 PRO B 154 MET B 157 0 SHEET 2 AA7 4 VAL B 170 PHE B 174 -1 O ALA B 171 N MET B 157 SHEET 3 AA7 4 GLU B 207 ARG B 211 -1 O TRP B 210 N VAL B 170 SHEET 4 AA7 4 ALA B 199 ASN B 204 -1 N TYR B 201 O ARG B 209 SHEET 1 AA8 4 VAL B 163 VAL B 164 0 SHEET 2 AA8 4 VAL B 243 ILE B 249 1 O THR B 248 N VAL B 164 SHEET 3 AA8 4 ALA B 221 VAL B 226 -1 N VAL B 222 O PHE B 247 SHEET 4 AA8 4 ILE B 188 ASN B 193 -1 N ASN B 193 O ALA B 221 SHEET 1 AA9 5 GLU B 271 PRO B 277 0 SHEET 2 AA9 5 ILE B 263 VAL B 268 -1 N LEU B 264 O MET B 276 SHEET 3 AA9 5 VAL B 253 ASP B 258 -1 N THR B 256 O THR B 265 SHEET 4 AA9 5 ILE B 374 VAL B 378 1 O ILE B 374 N ALA B 255 SHEET 5 AA9 5 GLY B 290 ILE B 293 -1 N TYR B 292 O VAL B 375 SHEET 1 AB1 4 ARG B 297 ASP B 304 0 SHEET 2 AB1 4 ARG B 319 GLN B 327 -1 O THR B 320 N MET B 303 SHEET 3 AB1 4 PHE B 334 SER B 337 -1 O VAL B 335 N THR B 326 SHEET 4 AB1 4 LEU B 355 VAL B 357 1 O LEU B 355 N PHE B 334 LINK SG CYS A 354 SAH SDQ A 501 1555 1555 2.06 CISPEP 1 MET A 157 PRO A 158 0 -1.36 CISPEP 2 MET A 157 PRO A 158 0 3.76 CISPEP 3 ASN A 193 PRO A 194 0 -4.81 CISPEP 4 MET B 157 PRO B 158 0 4.89 CISPEP 5 ASN B 193 PRO B 194 0 1.02 CRYST1 50.309 74.873 67.764 90.00 111.52 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019877 0.000000 0.007837 0.00000 SCALE2 0.000000 0.013356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015863 0.00000