HEADER OXIDOREDUCTASE 13-AUG-20 7A1K
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-((9,9-
TITLE 2 DIMETHYL-9H-FLUOREN-2-YL)METHYL)-2-OXOGLUTARATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1K 1 REMARK
REVDAT 2 22-DEC-21 7A1K 1 JRNL
REVDAT 1 25-AUG-21 7A1K 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 1.99 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.39
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 73389
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.208
REMARK 3 R VALUE (WORKING SET) : 0.207
REMARK 3 FREE R VALUE : 0.227
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940
REMARK 3 FREE R VALUE TEST SET COUNT : 3628
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.3900 - 5.8900 1.00 2693 146 0.2095 0.2093
REMARK 3 2 5.8900 - 4.6800 1.00 2680 134 0.1720 0.1909
REMARK 3 3 4.6800 - 4.0900 1.00 2636 174 0.1507 0.1793
REMARK 3 4 4.0900 - 3.7100 1.00 2718 131 0.1811 0.1898
REMARK 3 5 3.7100 - 3.4500 1.00 2633 154 0.2030 0.2290
REMARK 3 6 3.4500 - 3.2400 1.00 2710 144 0.2225 0.2855
REMARK 3 7 3.2400 - 3.0800 1.00 2709 116 0.2476 0.2682
REMARK 3 8 3.0800 - 2.9500 1.00 2697 157 0.2425 0.2752
REMARK 3 9 2.9500 - 2.8300 1.00 2682 116 0.2375 0.2661
REMARK 3 10 2.8300 - 2.7400 1.00 2730 115 0.2241 0.2421
REMARK 3 11 2.7400 - 2.6500 1.00 2675 124 0.2196 0.2318
REMARK 3 12 2.6500 - 2.5700 1.00 2709 141 0.2258 0.2631
REMARK 3 13 2.5700 - 2.5100 1.00 2696 126 0.2131 0.2254
REMARK 3 14 2.5100 - 2.4500 1.00 2674 144 0.2163 0.2397
REMARK 3 15 2.4500 - 2.3900 1.00 2639 148 0.2106 0.2711
REMARK 3 16 2.3900 - 2.3400 1.00 2728 142 0.2237 0.2807
REMARK 3 17 2.3400 - 2.2900 1.00 2673 152 0.2380 0.2496
REMARK 3 18 2.2900 - 2.2500 1.00 2688 143 0.2532 0.2731
REMARK 3 19 2.2500 - 2.2100 1.00 2647 145 0.2590 0.2723
REMARK 3 20 2.2100 - 2.1700 1.00 2689 162 0.2821 0.3489
REMARK 3 21 2.1700 - 2.1400 1.00 2686 134 0.3143 0.3593
REMARK 3 22 2.1400 - 2.1000 1.00 2681 140 0.3313 0.3689
REMARK 3 23 2.1000 - 2.0700 0.99 2666 135 0.3247 0.3409
REMARK 3 24 2.0700 - 2.0400 1.00 2689 129 0.3604 0.3393
REMARK 3 25 2.0400 - 2.0200 0.99 2670 137 0.3977 0.3651
REMARK 3 26 2.0200 - 1.9900 0.98 2663 139 0.4303 0.4638
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.308
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.673
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 56.54
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.90
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.009 2882
REMARK 3 ANGLE : 0.673 3937
REMARK 3 CHIRALITY : 0.054 396
REMARK 3 PLANARITY : 0.005 521
REMARK 3 DIHEDRAL : 17.552 1057
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.5350 29.5073 14.3052
REMARK 3 T TENSOR
REMARK 3 T11: 0.9347 T22: 0.6103
REMARK 3 T33: 1.0626 T12: -0.0017
REMARK 3 T13: -0.2705 T23: -0.0319
REMARK 3 L TENSOR
REMARK 3 L11: 1.4759 L22: 0.8475
REMARK 3 L33: 0.6949 L12: 0.7850
REMARK 3 L13: 0.1447 L23: -0.4635
REMARK 3 S TENSOR
REMARK 3 S11: -0.2132 S12: 0.2828 S13: -0.0975
REMARK 3 S21: -0.8348 S22: -0.3039 S23: 1.1380
REMARK 3 S31: -0.3563 S32: -0.4260 S33: 0.4428
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 190 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.9016 18.1516 30.3023
REMARK 3 T TENSOR
REMARK 3 T11: 0.8505 T22: 0.4946
REMARK 3 T33: 0.5757 T12: -0.0245
REMARK 3 T13: -0.0530 T23: 0.0925
REMARK 3 L TENSOR
REMARK 3 L11: 2.7448 L22: 3.2318
REMARK 3 L33: 1.8634 L12: 0.1119
REMARK 3 L13: -0.0137 L23: 1.7294
REMARK 3 S TENSOR
REMARK 3 S11: -0.0473 S12: -0.4905 S13: -0.2396
REMARK 3 S21: 0.6862 S22: 0.0113 S23: 0.3058
REMARK 3 S31: 0.6164 S32: -0.1392 S33: 0.0269
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 330 )
REMARK 3 ORIGIN FOR THE GROUP (A): 24.4262 33.5958 27.6763
REMARK 3 T TENSOR
REMARK 3 T11: 0.6842 T22: 0.4397
REMARK 3 T33: 0.6020 T12: -0.0193
REMARK 3 T13: -0.1068 T23: 0.0114
REMARK 3 L TENSOR
REMARK 3 L11: 1.0268 L22: 2.1137
REMARK 3 L33: 2.2161 L12: 0.2146
REMARK 3 L13: 0.5422 L23: 0.8407
REMARK 3 S TENSOR
REMARK 3 S11: -0.0170 S12: -0.1021 S13: 0.0171
REMARK 3 S21: 0.0087 S22: 0.0452 S23: 0.1795
REMARK 3 S31: 0.0105 S32: -0.0006 S33: -0.0473
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.5126 49.8805 42.3160
REMARK 3 T TENSOR
REMARK 3 T11: 0.5283 T22: 0.6843
REMARK 3 T33: 0.4949 T12: -0.0241
REMARK 3 T13: -0.0612 T23: -0.0898
REMARK 3 L TENSOR
REMARK 3 L11: 6.3394 L22: 6.1357
REMARK 3 L33: 5.0918 L12: 2.0099
REMARK 3 L13: -1.7803 L23: -0.7103
REMARK 3 S TENSOR
REMARK 3 S11: -0.1845 S12: -0.4046 S13: 0.6403
REMARK 3 S21: -0.0474 S22: 0.1433 S23: 0.5859
REMARK 3 S31: 0.3861 S32: 0.0785 S33: -0.0780
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110657.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73389
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990
REMARK 200 RESOLUTION RANGE LOW (A) : 74.588
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.20
REMARK 200 R MERGE (I) : 0.07600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 27.70
REMARK 200 R MERGE FOR SHELL (I) : 5.66500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.12
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.44900
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09050
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09050
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.22450
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09050
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09050
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.67350
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09050
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09050
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.22450
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09050
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09050
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.67350
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.44900
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.18100
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.18100
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.44900
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 GLY A 12
REMARK 465 SER A 13
REMARK 465 GLY A 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 GLN A 112 CD OE1 NE2
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 133 CG CD OE1 NE2
REMARK 470 ARG A 156 NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 LYS A 298 CE NZ
REMARK 470 LYS A 304 CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 307 CG CD OE1 OE2
REMARK 470 LYS A 311 CD CE NZ
REMARK 470 LYS A 345 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 551 O HOH A 556 2.12
REMARK 500 O HOH A 529 O HOH A 552 2.19
REMARK 500 O HOH A 557 O HOH A 560 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ALA A 95 138.19 -170.37
REMARK 500 ASN A 151 -159.83 -149.46
REMARK 500 ARG A 238 -4.35 83.20
REMARK 500 TYR A 276 -5.29 73.87
REMARK 500 ASN A 332 119.87 -167.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 116.8
REMARK 620 3 HIS A 279 NE2 94.0 79.2
REMARK 620 4 QVZ A 402 O01 82.4 158.8 109.9
REMARK 620 5 QVZ A 402 O02 153.7 82.3 107.9 76.6
REMARK 620 6 HOH A 502 O 76.1 83.1 153.2 93.8 89.4
REMARK 620 N 1 2 3 4 5
DBREF 7A1K A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET ZN A 401 1
HET QVZ A 402 44
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HET SO4 A 406 5
HETNAM ZN ZINC ION
HETNAM QVZ 3-((9,9-DIMETHYL-9H-FLUOREN-2-YL)METHYL)-2-OXOGLUTARATE
HETNAM SO4 SULFATE ION
HETSYN QVZ (3~{S})-3-[(9,9-DIMETHYLFLUOREN-2-YL)METHYL]-2-
HETSYN 2 QVZ OXIDANYLIDENE-PENTANEDIOIC ACID
FORMUL 2 ZN ZN 2+
FORMUL 3 QVZ C21 H20 O5
FORMUL 4 SO4 4(O4 S 2-)
FORMUL 8 HOH *63(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 ASP A 104 ASN A 110 5 7
HELIX 7 AA7 LYS A 124 ARG A 138 1 15
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N THR A 183 O TRP A 296
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O MET A 123 N PHE A 90
LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.14
LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 2.10
LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.15
LINK ZN ZN A 401 O01 QVZ A 402 1555 1555 2.23
LINK ZN ZN A 401 O02 QVZ A 402 1555 1555 1.93
LINK ZN ZN A 401 O HOH A 502 1555 1555 2.25
CISPEP 1 TYR A 308 PRO A 309 0 5.57
CRYST1 86.181 86.181 148.898 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011603 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011603 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006716 0.00000