HEADER OXIDOREDUCTASE 13-AUG-20 7A1L
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-METHYL-2-
TITLE 2 OXOGLUTARATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1L 1 REMARK
REVDAT 2 22-DEC-21 7A1L 1 JRNL
REVDAT 1 25-AUG-21 7A1L 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 2.29 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 48385
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.209
REMARK 3 R VALUE (WORKING SET) : 0.208
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960
REMARK 3 FREE R VALUE TEST SET COUNT : 2398
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 47.1700 - 5.8800 1.00 2695 158 0.2076 0.2301
REMARK 3 2 5.8800 - 4.6700 1.00 2726 133 0.1686 0.1908
REMARK 3 3 4.6700 - 4.0800 1.00 2676 157 0.1524 0.1741
REMARK 3 4 4.0800 - 3.7100 1.00 2726 128 0.1800 0.1556
REMARK 3 5 3.7100 - 3.4400 1.00 2733 126 0.2045 0.2179
REMARK 3 6 3.4400 - 3.2400 1.00 2716 135 0.2304 0.2300
REMARK 3 7 3.2400 - 3.0800 1.00 2685 152 0.2503 0.2533
REMARK 3 8 3.0800 - 2.9400 1.00 2684 178 0.2560 0.3061
REMARK 3 9 2.9400 - 2.8300 1.00 2715 140 0.2422 0.2762
REMARK 3 10 2.8300 - 2.7300 1.00 2706 135 0.2613 0.2371
REMARK 3 11 2.7300 - 2.6500 1.00 2728 119 0.2642 0.3054
REMARK 3 12 2.6500 - 2.5700 1.00 2736 141 0.2744 0.3157
REMARK 3 13 2.5700 - 2.5000 1.00 2693 130 0.2865 0.2612
REMARK 3 14 2.5000 - 2.4400 1.00 2702 160 0.2874 0.2950
REMARK 3 15 2.4400 - 2.3900 1.00 2673 138 0.2999 0.3317
REMARK 3 16 2.3900 - 2.3400 1.00 2729 135 0.3286 0.3422
REMARK 3 17 2.3400 - 2.2900 0.99 2664 133 0.3423 0.3755
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.336
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.352
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 63.09
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.48
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 2865
REMARK 3 ANGLE : 0.481 3906
REMARK 3 CHIRALITY : 0.042 395
REMARK 3 PLANARITY : 0.003 519
REMARK 3 DIHEDRAL : 16.823 1059
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.6344 29.4086 14.3375
REMARK 3 T TENSOR
REMARK 3 T11: 0.9581 T22: 0.5855
REMARK 3 T33: 0.9284 T12: -0.0321
REMARK 3 T13: -0.3304 T23: -0.0408
REMARK 3 L TENSOR
REMARK 3 L11: 1.7766 L22: 0.3474
REMARK 3 L33: 0.8518 L12: 0.6812
REMARK 3 L13: 0.4387 L23: -0.0791
REMARK 3 S TENSOR
REMARK 3 S11: -0.3227 S12: 0.2542 S13: -0.0596
REMARK 3 S21: -0.6840 S22: -0.1818 S23: 1.0046
REMARK 3 S31: -0.1966 S32: -0.4803 S33: 0.4949
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 166 )
REMARK 3 ORIGIN FOR THE GROUP (A): 17.1192 18.5315 31.8924
REMARK 3 T TENSOR
REMARK 3 T11: 0.9852 T22: 0.5701
REMARK 3 T33: 0.6518 T12: -0.1468
REMARK 3 T13: -0.0797 T23: 0.1142
REMARK 3 L TENSOR
REMARK 3 L11: 2.3095 L22: 3.1763
REMARK 3 L33: 2.7623 L12: 0.6411
REMARK 3 L13: 0.3408 L23: 1.3063
REMARK 3 S TENSOR
REMARK 3 S11: 0.1614 S12: -0.4433 S13: -0.2881
REMARK 3 S21: 0.6631 S22: -0.1973 S23: 0.3464
REMARK 3 S31: 0.5822 S32: -0.2727 S33: 0.0369
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.8988 16.8356 21.0512
REMARK 3 T TENSOR
REMARK 3 T11: 1.0090 T22: 0.6787
REMARK 3 T33: 0.9000 T12: 0.0634
REMARK 3 T13: -0.2130 T23: -0.0201
REMARK 3 L TENSOR
REMARK 3 L11: 2.6958 L22: 3.1360
REMARK 3 L33: 0.8025 L12: 1.0611
REMARK 3 L13: 0.3951 L23: 1.4819
REMARK 3 S TENSOR
REMARK 3 S11: 0.4019 S12: 0.2827 S13: -0.6332
REMARK 3 S21: 0.2822 S22: 0.0947 S23: -0.8056
REMARK 3 S31: 0.1627 S32: 0.1650 S33: -0.4707
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 247 )
REMARK 3 ORIGIN FOR THE GROUP (A): 21.2184 33.3469 29.2702
REMARK 3 T TENSOR
REMARK 3 T11: 0.7072 T22: 0.4518
REMARK 3 T33: 0.6326 T12: -0.0097
REMARK 3 T13: -0.1221 T23: 0.0074
REMARK 3 L TENSOR
REMARK 3 L11: 1.0780 L22: 2.9723
REMARK 3 L33: 4.0173 L12: 1.4069
REMARK 3 L13: 1.8715 L23: 2.3184
REMARK 3 S TENSOR
REMARK 3 S11: 0.0171 S12: -0.1743 S13: 0.0946
REMARK 3 S21: 0.0863 S22: -0.0486 S23: 0.4610
REMARK 3 S31: 0.1159 S32: -0.1291 S33: 0.0516
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.1843 32.0614 24.3756
REMARK 3 T TENSOR
REMARK 3 T11: 0.7993 T22: 0.4305
REMARK 3 T33: 0.6186 T12: -0.0101
REMARK 3 T13: -0.1689 T23: 0.0094
REMARK 3 L TENSOR
REMARK 3 L11: 1.7167 L22: 3.8661
REMARK 3 L33: 2.4267 L12: 1.1441
REMARK 3 L13: 0.1724 L23: 1.3542
REMARK 3 S TENSOR
REMARK 3 S11: -0.0322 S12: -0.0838 S13: -0.0627
REMARK 3 S21: -0.1216 S22: 0.0151 S23: 0.3172
REMARK 3 S31: 0.2213 S32: -0.1431 S33: 0.0098
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.8348 41.8655 34.2966
REMARK 3 T TENSOR
REMARK 3 T11: 0.5811 T22: 0.6197
REMARK 3 T33: 0.5829 T12: 0.0276
REMARK 3 T13: -0.0759 T23: -0.0486
REMARK 3 L TENSOR
REMARK 3 L11: 3.6645 L22: 4.8225
REMARK 3 L33: 2.2092 L12: 1.1963
REMARK 3 L13: 0.2412 L23: 1.2545
REMARK 3 S TENSOR
REMARK 3 S11: -0.0679 S12: 0.0839 S13: -0.4189
REMARK 3 S21: -0.0515 S22: 0.1146 S23: -0.2515
REMARK 3 S31: 0.2867 S32: 0.2820 S33: -0.0470
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110655.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 20-JUL-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48385
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290
REMARK 200 RESOLUTION RANGE LOW (A) : 74.050
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 26.10
REMARK 200 R MERGE (I) : 0.10600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8
REMARK 200 DATA REDUNDANCY IN SHELL : 25.80
REMARK 200 R MERGE FOR SHELL (I) : 3.51900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.23
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.04550
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.27500
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.27500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.02275
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.27500
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.27500
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.06825
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.27500
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.27500
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.02275
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.27500
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.27500
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.06825
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.04550
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 GLY A 12
REMARK 465 SER A 13
REMARK 465 GLY A 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 LYS A 115 CE NZ
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 GLU A 250 CD OE1 OE2
REMARK 470 LYS A 298 CD CE NZ
REMARK 470 LYS A 304 CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 311 CD CE NZ
REMARK 470 LYS A 345 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 542 O HOH A 543 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 48.21 -142.59
REMARK 500 PHE A 100 73.84 -109.64
REMARK 500 ILE A 210 -55.61 -120.34
REMARK 500 ARG A 238 -3.26 82.76
REMARK 500 TYR A 276 -1.03 72.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 402 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 120.4
REMARK 620 3 HIS A 279 NE2 71.6 104.3
REMARK 620 4 ROQ A 401 O01 69.8 160.9 94.2
REMARK 620 5 ROQ A 401 O02 142.1 97.5 102.8 73.4
REMARK 620 N 1 2 3 4
DBREF 7A1L A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET ROQ A 401 17
HET ZN A 402 1
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HET SO4 A 406 5
HETNAM ROQ (3~{S})-3-METHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID
HETNAM ZN ZINC ION
HETNAM SO4 SULFATE ION
FORMUL 2 ROQ C6 H8 O5
FORMUL 3 ZN ZN 2+
FORMUL 4 SO4 4(O4 S 2-)
FORMUL 8 HOH *57(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 ASP A 104 ASN A 110 5 7
HELIX 7 AA7 LYS A 124 ARG A 138 1 15
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 LEU A 330 1 20
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N LYS A 211
SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N THR A 183 O TRP A 296
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O GLU A 121 N VAL A 92
LINK NE2 HIS A 199 ZN ZN A 402 1555 1555 2.66
LINK OD2 ASP A 201 ZN ZN A 402 1555 1555 1.99
LINK NE2 HIS A 279 ZN ZN A 402 1555 1555 2.48
LINK O01 ROQ A 401 ZN ZN A 402 1555 1555 2.08
LINK O02 ROQ A 401 ZN ZN A 402 1555 1555 2.20
CISPEP 1 TYR A 308 PRO A 309 0 3.87
CRYST1 86.550 86.550 148.091 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011554 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011554 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006753 0.00000