HEADER OXIDOREDUCTASE 13-AUG-20 7A1M TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-PROPYL-2- TITLE 2 OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1M 1 REMARK REVDAT 2 22-DEC-21 7A1M 1 JRNL REVDAT 1 25-AUG-21 7A1M 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 51777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2900 - 5.7100 1.00 2966 142 0.2091 0.2214 REMARK 3 2 5.7100 - 4.5300 1.00 2916 158 0.1738 0.1985 REMARK 3 3 4.5300 - 3.9600 1.00 2945 175 0.1657 0.2011 REMARK 3 4 3.9600 - 3.6000 0.85 2509 131 0.1912 0.2245 REMARK 3 5 3.6000 - 3.3400 1.00 2969 120 0.2185 0.2546 REMARK 3 6 3.3400 - 3.1400 1.00 2958 145 0.2323 0.2497 REMARK 3 7 3.1400 - 2.9800 1.00 2917 158 0.2384 0.2671 REMARK 3 8 2.9800 - 2.8500 1.00 2984 147 0.2342 0.2772 REMARK 3 9 2.8500 - 2.7400 1.00 2917 141 0.2631 0.2885 REMARK 3 10 2.7400 - 2.6500 1.00 2958 152 0.2900 0.3692 REMARK 3 11 2.6500 - 2.5700 1.00 2931 146 0.3015 0.2980 REMARK 3 12 2.5700 - 2.4900 1.00 2934 153 0.2967 0.2858 REMARK 3 13 2.4900 - 2.4300 1.00 3017 127 0.3014 0.3607 REMARK 3 14 2.4300 - 2.3700 1.00 2912 157 0.3350 0.3324 REMARK 3 15 2.3700 - 2.3100 1.00 2915 144 0.3635 0.3902 REMARK 3 16 2.3100 - 2.2700 0.98 2814 154 0.3879 0.4468 REMARK 3 17 2.2200 - 2.2200 0.26 16 0 0.4928 0.0000 REMARK 3 18 2.2200 - 2.1800 0.92 2712 137 0.4641 0.4816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.075 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2866 REMARK 3 ANGLE : 0.585 3909 REMARK 3 CHIRALITY : 0.047 396 REMARK 3 PLANARITY : 0.004 521 REMARK 3 DIHEDRAL : 17.951 1059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4651 29.3952 14.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.9499 T22: 0.6524 REMARK 3 T33: 1.0638 T12: -0.0144 REMARK 3 T13: -0.3031 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.0297 L22: 0.3023 REMARK 3 L33: 0.7886 L12: 0.7741 REMARK 3 L13: 0.0914 L23: -0.0353 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.0210 S13: -0.0624 REMARK 3 S21: -0.8323 S22: -0.3334 S23: 1.0172 REMARK 3 S31: -0.4198 S32: -0.3123 S33: 0.2990 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7992 19.2768 25.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.7312 T22: 0.4820 REMARK 3 T33: 0.6872 T12: -0.0653 REMARK 3 T13: -0.1057 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.7624 L22: 3.0535 REMARK 3 L33: 2.2403 L12: -0.4166 REMARK 3 L13: -0.0514 L23: 1.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: -0.1073 S13: -0.2075 REMARK 3 S21: 0.1290 S22: -0.0665 S23: 0.2719 REMARK 3 S31: 0.1737 S32: -0.0106 S33: 0.0765 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4919 27.1799 46.4967 REMARK 3 T TENSOR REMARK 3 T11: 1.1553 T22: 1.0381 REMARK 3 T33: 0.7940 T12: -0.1452 REMARK 3 T13: 0.0552 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.4409 L22: 0.1381 REMARK 3 L33: 0.9279 L12: -0.1693 REMARK 3 L13: 0.6220 L23: -0.3365 REMARK 3 S TENSOR REMARK 3 S11: 0.4330 S12: -1.5782 S13: 0.0936 REMARK 3 S21: 1.2461 S22: -0.9338 S23: 0.0483 REMARK 3 S31: 0.0658 S32: -0.1969 S33: 0.4786 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1330 12.8953 34.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.9934 T22: 0.6653 REMARK 3 T33: 0.7372 T12: -0.1914 REMARK 3 T13: 0.0390 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.7756 L22: 1.6468 REMARK 3 L33: 1.9417 L12: 0.0884 REMARK 3 L13: 0.5109 L23: 0.0750 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.2123 S13: -0.5676 REMARK 3 S21: 0.6803 S22: -0.1203 S23: 0.4778 REMARK 3 S31: 0.7334 S32: -0.4412 S33: 0.0105 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6897 16.7734 21.0842 REMARK 3 T TENSOR REMARK 3 T11: 0.8580 T22: 0.5415 REMARK 3 T33: 0.7892 T12: 0.0293 REMARK 3 T13: -0.1244 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.8828 L22: 2.3320 REMARK 3 L33: 1.0997 L12: 1.1518 REMARK 3 L13: 0.7309 L23: 0.5237 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.1001 S13: 0.0014 REMARK 3 S21: 0.1565 S22: 0.3168 S23: -0.2219 REMARK 3 S31: 0.2240 S32: 0.4386 S33: -0.4053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9099 33.1793 29.3326 REMARK 3 T TENSOR REMARK 3 T11: 0.7081 T22: 0.5271 REMARK 3 T33: 0.7048 T12: -0.0258 REMARK 3 T13: -0.1216 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.3987 L22: 1.7164 REMARK 3 L33: 2.2450 L12: 0.3987 REMARK 3 L13: 0.7717 L23: 0.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.1985 S13: 0.1930 REMARK 3 S21: 0.1363 S22: -0.0683 S23: 0.3146 REMARK 3 S31: -0.0611 S32: -0.0771 S33: 0.0481 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9033 31.9375 24.4226 REMARK 3 T TENSOR REMARK 3 T11: 0.7747 T22: 0.5089 REMARK 3 T33: 0.7474 T12: -0.0346 REMARK 3 T13: -0.0948 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3103 L22: 2.6815 REMARK 3 L33: 0.6527 L12: -0.9214 REMARK 3 L13: -0.1017 L23: 0.3541 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.0277 S13: 0.1039 REMARK 3 S21: 0.0308 S22: 0.0544 S23: 0.1230 REMARK 3 S31: 0.0187 S32: -0.1612 S33: -0.0068 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6329 36.5674 29.8682 REMARK 3 T TENSOR REMARK 3 T11: 0.7172 T22: 0.6726 REMARK 3 T33: 0.8918 T12: 0.0073 REMARK 3 T13: -0.1114 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 1.2412 L22: 1.7356 REMARK 3 L33: 0.4018 L12: 0.1242 REMARK 3 L13: -0.2564 L23: 0.8721 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: 0.0354 S13: 0.0220 REMARK 3 S21: 0.2203 S22: 0.0565 S23: -0.2248 REMARK 3 S31: 0.4546 S32: 0.3593 S33: -0.1359 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3701 49.7206 42.3626 REMARK 3 T TENSOR REMARK 3 T11: 0.6824 T22: 0.7292 REMARK 3 T33: 0.6006 T12: -0.0579 REMARK 3 T13: -0.0306 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 4.0544 L22: 4.1583 REMARK 3 L33: 2.7638 L12: 0.8748 REMARK 3 L13: -0.4748 L23: 0.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: -0.4479 S13: 0.5876 REMARK 3 S21: 0.2183 S22: 0.2506 S23: 0.5975 REMARK 3 S31: 0.4719 S32: -0.3115 S33: -0.0829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.178 REMARK 200 RESOLUTION RANGE LOW (A) : 74.448 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.20 REMARK 200 R MERGE FOR SHELL (I) : 6.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.47850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.97700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.97700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.23925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.97700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.97700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.71775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.97700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.97700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.23925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.97700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.97700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.71775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.47850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 85.95400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 85.95400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.47850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 156 NE CZ NH1 NH2 REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 238 O HOH A 601 1.40 REMARK 500 O HOH A 639 O HOH A 655 2.10 REMARK 500 O HOH A 645 O HOH A 647 2.11 REMARK 500 O HOH A 637 O HOH A 655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 625 O HOH A 634 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 45.00 -145.11 REMARK 500 PHE A 100 70.20 -108.09 REMARK 500 ILE A 210 -55.71 -120.61 REMARK 500 ARG A 238 -9.10 87.29 REMARK 500 ASN A 246 73.10 -150.67 REMARK 500 TYR A 276 -2.56 74.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 112.0 REMARK 620 3 HIS A 279 NE2 86.9 88.8 REMARK 620 4 QVW A 501 O04 79.9 165.6 100.1 REMARK 620 5 QVW A 501 O05 161.6 86.1 97.2 81.7 REMARK 620 6 HOH A 622 O 73.2 93.4 159.3 82.2 103.4 REMARK 620 N 1 2 3 4 5 DBREF 7A1M A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A 500 1 HET QVW A 501 23 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM ZN ZINC ION HETNAM QVW 3-PROPYL-2-OXOGLUTARATE HETNAM SO4 SULFATE ION HETSYN QVW (3~{S})-2-OXIDANYLIDENE-3-PROPYL-PENTANEDIOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 QVW C8 H12 O5 FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *62(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 GLU A 105 ASN A 110 5 6 HELIX 6 AA6 LYS A 124 ARG A 138 1 15 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 ARG A 177 1 12 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 GLY A 331 1 21 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O GLU A 121 N VAL A 92 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 500 1555 1555 2.18 LINK OD2 ASP A 201 ZN ZN A 500 1555 1555 2.00 LINK NE2 HIS A 279 ZN ZN A 500 1555 1555 2.21 LINK ZN ZN A 500 O04 QVW A 501 1555 1555 2.14 LINK ZN ZN A 500 O05 QVW A 501 1555 1555 1.99 LINK ZN ZN A 500 O HOH A 622 1555 1555 2.48 CISPEP 1 TYR A 308 PRO A 309 0 4.73 CRYST1 85.954 85.954 148.957 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011634 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006713 0.00000