HEADER OXIDOREDUCTASE 13-AUG-20 7A1N
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-METHYL-2-
TITLE 2 OXOGLUTARATE, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1N 1 REMARK
REVDAT 2 22-DEC-21 7A1N 1 JRNL
REVDAT 1 25-AUG-21 7A1N 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 2.01 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.27
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 37686
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.214
REMARK 3 R VALUE (WORKING SET) : 0.213
REMARK 3 FREE R VALUE : 0.234
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1885
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 56.2700 - 4.7200 1.00 2988 161 0.2293 0.2215
REMARK 3 2 4.7200 - 3.7500 1.00 2831 146 0.1686 0.2103
REMARK 3 3 3.7500 - 3.2800 1.00 2800 134 0.1955 0.2322
REMARK 3 4 3.2800 - 2.9800 1.00 2758 153 0.2102 0.2238
REMARK 3 5 2.9800 - 2.7600 1.00 2749 135 0.2229 0.2738
REMARK 3 6 2.7600 - 2.6000 1.00 2751 142 0.2190 0.2330
REMARK 3 7 2.6000 - 2.4700 1.00 2734 139 0.2243 0.2720
REMARK 3 8 2.4700 - 2.3600 1.00 2723 162 0.2254 0.2457
REMARK 3 9 2.3600 - 2.2700 1.00 2699 143 0.2437 0.2424
REMARK 3 10 2.2700 - 2.1900 1.00 2724 140 0.2677 0.2998
REMARK 3 11 2.1900 - 2.1200 1.00 2715 134 0.2909 0.3011
REMARK 3 12 2.1200 - 2.0600 1.00 2678 154 0.3040 0.3076
REMARK 3 13 2.0600 - 2.0100 0.98 2651 142 0.3359 0.3473
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.613
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 50.39
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.09
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 2955
REMARK 3 ANGLE : 0.541 4023
REMARK 3 CHIRALITY : 0.043 408
REMARK 3 PLANARITY : 0.004 528
REMARK 3 DIHEDRAL : 18.726 1075
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 95 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.9246 -21.8550 17.5484
REMARK 3 T TENSOR
REMARK 3 T11: 0.4940 T22: 0.4176
REMARK 3 T33: 0.4668 T12: 0.0468
REMARK 3 T13: 0.1244 T23: 0.0132
REMARK 3 L TENSOR
REMARK 3 L11: 1.5537 L22: 3.5405
REMARK 3 L33: 2.2776 L12: -0.4139
REMARK 3 L13: 0.3904 L23: 0.8091
REMARK 3 S TENSOR
REMARK 3 S11: -0.0019 S12: 0.0438 S13: 0.1060
REMARK 3 S21: 0.2425 S22: -0.1371 S23: 0.3599
REMARK 3 S31: -0.0788 S32: -0.1944 S33: 0.1144
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 117 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.0421 -31.8295 -6.5489
REMARK 3 T TENSOR
REMARK 3 T11: 0.7348 T22: 0.6792
REMARK 3 T33: 0.4992 T12: 0.0625
REMARK 3 T13: 0.0351 T23: -0.0680
REMARK 3 L TENSOR
REMARK 3 L11: 7.9445 L22: 5.1739
REMARK 3 L33: 5.8648 L12: -3.1030
REMARK 3 L13: -2.1713 L23: 2.3779
REMARK 3 S TENSOR
REMARK 3 S11: 0.0031 S12: 1.3201 S13: -0.1297
REMARK 3 S21: -0.7248 S22: -0.3471 S23: -0.2186
REMARK 3 S31: -0.1504 S32: 0.0273 S33: 0.2650
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.2517 -25.5978 8.4952
REMARK 3 T TENSOR
REMARK 3 T11: 0.5595 T22: 0.4250
REMARK 3 T33: 0.4797 T12: 0.0405
REMARK 3 T13: 0.0442 T23: 0.0092
REMARK 3 L TENSOR
REMARK 3 L11: 0.7910 L22: 2.0009
REMARK 3 L33: 1.4603 L12: -0.5914
REMARK 3 L13: -0.1129 L23: 0.6495
REMARK 3 S TENSOR
REMARK 3 S11: 0.0419 S12: 0.1155 S13: 0.0477
REMARK 3 S21: -0.1580 S22: -0.0685 S23: 0.1728
REMARK 3 S31: -0.1609 S32: -0.1404 S33: 0.0339
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.3297 -40.9583 2.8769
REMARK 3 T TENSOR
REMARK 3 T11: 0.5252 T22: 0.5240
REMARK 3 T33: 0.5040 T12: 0.0168
REMARK 3 T13: 0.0429 T23: -0.0130
REMARK 3 L TENSOR
REMARK 3 L11: 1.3711 L22: 2.1904
REMARK 3 L33: 0.8966 L12: -1.3395
REMARK 3 L13: -0.7459 L23: 0.5406
REMARK 3 S TENSOR
REMARK 3 S11: 0.0875 S12: 0.0582 S13: 0.1740
REMARK 3 S21: -0.0309 S22: 0.0255 S23: -0.1362
REMARK 3 S31: -0.1790 S32: 0.1213 S33: -0.1317
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 9 )
REMARK 3 ORIGIN FOR THE GROUP (A): 47.5646 -35.6180 6.8507
REMARK 3 T TENSOR
REMARK 3 T11: 0.6491 T22: 0.7488
REMARK 3 T33: 0.7448 T12: -0.0210
REMARK 3 T13: -0.0766 T23: -0.1637
REMARK 3 L TENSOR
REMARK 3 L11: 8.6513 L22: 2.8286
REMARK 3 L33: 7.2490 L12: -0.7465
REMARK 3 L13: -3.0953 L23: -2.2630
REMARK 3 S TENSOR
REMARK 3 S11: 0.5238 S12: 0.0934 S13: 0.2213
REMARK 3 S21: 0.5594 S22: 0.7925 S23: -1.1971
REMARK 3 S31: 0.3057 S32: 1.2251 S33: -1.3629
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 20 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.2033 -25.4284 1.6063
REMARK 3 T TENSOR
REMARK 3 T11: 0.7169 T22: 0.5816
REMARK 3 T33: 0.7524 T12: -0.0103
REMARK 3 T13: 0.0693 T23: 0.1312
REMARK 3 L TENSOR
REMARK 3 L11: 3.3636 L22: 4.5030
REMARK 3 L33: 4.5854 L12: -0.6634
REMARK 3 L13: 0.9038 L23: 0.0580
REMARK 3 S TENSOR
REMARK 3 S11: -0.3077 S12: 0.7127 S13: 0.7495
REMARK 3 S21: -0.9258 S22: -0.1883 S23: -0.1460
REMARK 3 S31: -0.3676 S32: 0.4242 S33: 0.4547
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110542.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37759
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010
REMARK 200 RESOLUTION RANGE LOW (A) : 74.370
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.30
REMARK 200 R MERGE (I) : 0.11200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 27.10
REMARK 200 R MERGE FOR SHELL (I) : 6.26900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.36
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.91650
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.02600
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.02600
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.95825
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.02600
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.02600
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.87475
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.02600
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.02600
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.95825
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.02600
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.02600
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.87475
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.91650
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 GLY A 12
REMARK 465 SER A 13
REMARK 465 GLY A 14
REMARK 465 GLU A 15
REMARK 465 PRO A 16
REMARK 465 ARG A 17
REMARK 465 GLU A 18
REMARK 465 GLU A 19
REMARK 465 HIS B 1
REMARK 465 LEU B 2
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 307 CG CD OE1 OE2
REMARK 470 GLU B 3 CG CD OE1 OE2
REMARK 470 LYS B 20 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HH11 ARG A 44 O HOH A 1104 1.59
REMARK 500 O HOH A 1182 O HOH A 1258 2.01
REMARK 500 O HOH A 1224 O HOH A 1239 2.03
REMARK 500 O HOH A 1105 O HOH A 1258 2.05
REMARK 500 O HOH A 1164 O HOH A 1207 2.05
REMARK 500 O1 SO4 A 1010 O HOH A 1101 2.06
REMARK 500 O HOH A 1205 O HOH A 1241 2.07
REMARK 500 O HOH A 1186 O HOH A 1230 2.08
REMARK 500 O4 SO4 A 1003 O HOH A 1102 2.09
REMARK 500 O HOH A 1217 O HOH A 1244 2.09
REMARK 500 O HOH A 1189 O HOH A 1240 2.13
REMARK 500 O HOH A 1169 O HOH B 109 2.14
REMARK 500 O HOH A 1219 O HOH A 1264 2.18
REMARK 500 O HOH A 1136 O HOH A 1230 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7645 1.57
REMARK 500 O HOH A 1150 O HOH A 1220 5545 2.03
REMARK 500 O HOH A 1150 O HOH A 1185 5545 2.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 41.09 -145.30
REMARK 500 PHE A 100 72.64 -100.68
REMARK 500 SER A 184 149.16 -171.96
REMARK 500 GLU A 202 32.54 -89.16
REMARK 500 ILE A 210 -52.27 -121.74
REMARK 500 ARG A 238 -8.86 80.50
REMARK 500 ASN A 246 77.45 -153.12
REMARK 500 TYR A 276 -13.64 78.39
REMARK 500 ALA B 13 31.45 -145.29
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1007 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 107.0
REMARK 620 3 HIS A 279 NE2 96.5 88.5
REMARK 620 4 ROQ A1008 O01 85.4 160.3 105.5
REMARK 620 5 ROQ A1008 O03 148.1 91.1 110.4 71.3
REMARK 620 N 1 2 3 4
DBREF 7A1N A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
DBREF 7A1N B 1 20 PDB 7A1N 7A1N 1 20
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
SEQRES 1 B 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU ALA GLY ALA
SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS
HET SO4 A1001 5
HET SO4 A1002 5
HET SO4 A1003 5
HET SO4 A1004 5
HET SO4 A1005 5
HET SO4 A1006 5
HET ZN A1007 1
HET ROQ A1008 17
HET SO4 A1009 5
HET SO4 A1010 5
HET SO4 A1011 5
HETNAM SO4 SULFATE ION
HETNAM ZN ZINC ION
HETNAM ROQ (3~{S})-3-METHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID
FORMUL 3 SO4 9(O4 S 2-)
FORMUL 9 ZN ZN 2+
FORMUL 10 ROQ C6 H8 O5
FORMUL 14 HOH *181(H2 O)
HELIX 1 AA1 ASP A 28 LEU A 32 5 5
HELIX 2 AA2 ASP A 49 ASN A 58 1 10
HELIX 3 AA3 VAL A 70 TRP A 76 5 7
HELIX 4 AA4 ASP A 77 ILE A 85 1 9
HELIX 5 AA5 ASP A 104 GLN A 112 5 9
HELIX 6 AA6 LYS A 124 GLY A 139 1 16
HELIX 7 AA7 GLY A 155 GLY A 164 1 10
HELIX 8 AA8 ASN A 166 ARG A 177 1 12
HELIX 9 AA9 PRO A 220 ASP A 222 5 3
HELIX 10 AB1 GLN A 223 TYR A 228 1 6
HELIX 11 AB2 PHE A 252 VAL A 258 5 7
HELIX 12 AB3 LYS A 311 LEU A 330 1 20
HELIX 13 AB4 ASN A 332 GLN A 334 5 3
HELIX 14 AB5 GLU A 335 LYS A 345 1 11
HELIX 15 AB6 VAL B 4 GLU B 10 1 7
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210
SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90
SHEET 1 AA3 6 ARG A 44 LEU A 45 0
SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210
SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296
LINK NE2 HIS A 199 ZN ZN A1007 1555 1555 2.14
LINK OD2 ASP A 201 ZN ZN A1007 1555 1555 2.05
LINK NE2 HIS A 279 ZN ZN A1007 1555 1555 2.07
LINK ZN ZN A1007 O01 ROQ A1008 1555 1555 1.88
LINK ZN ZN A1007 O03 ROQ A1008 1555 1555 2.35
CISPEP 1 TYR A 308 PRO A 309 0 4.73
CRYST1 86.052 86.052 147.833 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011621 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011621 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006764 0.00000