data_7A3Y # _entry.id 7A3Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7A3Y pdb_00007a3y 10.2210/pdb7a3y/pdb WWPDB D_1292110820 ? ? BMRB 34553 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'RNA duplex with a cytosine bulge in complex with berberine' _pdbx_database_related.db_id 34553 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7A3Y _pdbx_database_status.recvd_initial_deposition_date 2020-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Podbevsek, P.' 1 0000-0002-2563-4507 'Plavec, J.' 2 0000-0003-1570-8602 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Interaction between berberine and RNA for the exploration of phytochemicals role' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Podbevsek, P.' 1 0000-0002-2563-4507 primary 'Plavec, J.' 2 0000-0003-1570-8602 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA-A chain A' 4109.478 1 ? ? ? ? 2 polymer syn 'RNA-A chain B' 3851.360 1 ? ? ? ? 3 non-polymer syn BERBERINE 336.361 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCAGCUCGUCCUG GCAGCUCGUCCUG A ? 2 polyribonucleotide no no CAGGAUAGCUGC CAGGAUAGCUGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 G n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 U n 1 10 C n 1 11 C n 1 12 U n 1 13 G n 2 1 C n 2 2 A n 2 3 G n 2 4 G n 2 5 A n 2 6 U n 2 7 A n 2 8 G n 2 9 C n 2 10 U n 2 11 G n 2 12 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 13 'synthetic construct' ? 32630 ? 2 1 sample 1 12 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7A3Y 7A3Y ? 1 ? 1 2 PDB 7A3Y 7A3Y ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7A3Y A 1 ? 13 ? 7A3Y 1 ? 13 ? 1 13 2 2 7A3Y B 1 ? 12 ? 7A3Y 14 ? 25 ? 14 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 110 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label c1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.3 mM RNA-A chain A, 0.3 mM RNA-A chain B, 100 mM sodium chloride, 10 mM sodium phosphate, 1 mM EDTA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label complex _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details 'Equimolar ammounts of RNA and berberine in solution' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VNMRS800 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7A3Y _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 7A3Y _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7A3Y _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 3.0.1 CCPN 2 'structure calculation' Amber 20 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7A3Y _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7A3Y _struct.title 'RNA duplex with a cytosine bulge in complex with berberine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7A3Y _struct_keywords.text 'berberine, cytosine bulge, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 2 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 2 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 2 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 3 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 3 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 4 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 4 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 4 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 5 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 5 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 5 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 6 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 6 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 B U 6 O2 ? ? A G 8 B U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 8 O6 ? ? ? 1_555 B U 6 N3 ? ? A G 8 B U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 9 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 9 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 10 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 10 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 10 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 2 N1 ? ? A U 12 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 2 N6 ? ? A U 12 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 13 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 13 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 13 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7A3Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 C 5 5 5 C C A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n B 2 1 C 1 14 14 C C B . n B 2 2 A 2 15 15 A A B . n B 2 3 G 3 16 16 G G B . n B 2 4 G 4 17 17 G G B . n B 2 5 A 5 18 18 A A B . n B 2 6 U 6 19 19 U U B . n B 2 7 A 7 20 20 A A B . n B 2 8 G 8 21 21 G G B . n B 2 9 C 9 22 22 C C B . n B 2 10 U 10 23 23 U U B . n B 2 11 G 11 24 24 G G B . n B 2 12 C 12 25 25 C C B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id BER _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 26 _pdbx_nonpoly_scheme.pdb_mon_id BER _pdbx_nonpoly_scheme.auth_mon_id BER _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1910 ? 1 MORE -7 ? 1 'SSA (A^2)' 4820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-10 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_entry_details.entry_id 7A3Y _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'RNA-A chain A' 0.3 ? mM 'natural abundance' 1 'RNA-A chain B' 0.3 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 EDTA 1 ? mM 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.06 121.90 -4.84 0.70 N 2 1 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.86 117.00 -3.14 0.50 N 3 1 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.27 117.70 3.57 0.50 N 4 1 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.01 118.60 -4.59 0.60 N 5 1 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.00 121.90 -4.90 0.70 N 6 1 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.58 121.90 -4.32 0.70 N 7 1 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.98 121.90 -4.92 0.70 N 8 1 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.70 121.90 -5.20 0.70 N 9 1 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.95 121.90 -4.95 0.70 N 10 1 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.87 117.00 -3.13 0.50 N 11 1 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.24 117.70 3.54 0.50 N 12 1 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.74 118.60 -4.86 0.60 N 13 1 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.87 117.00 -3.13 0.50 N 14 1 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.22 117.70 3.52 0.50 N 15 1 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.58 118.60 -5.02 0.60 N 16 1 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.34 117.70 3.64 0.50 N 17 1 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 113.97 118.60 -4.63 0.60 N 18 1 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.97 121.90 -4.93 0.70 N 19 1 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.05 121.90 -4.85 0.70 N 20 2 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 116.94 121.90 -4.96 0.70 N 21 2 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.88 117.00 -3.12 0.50 N 22 2 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.24 117.70 3.54 0.50 N 23 2 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.83 118.60 -4.77 0.60 N 24 2 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.05 121.90 -4.85 0.70 N 25 2 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.62 121.90 -4.28 0.70 N 26 2 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.90 121.90 -5.00 0.70 N 27 2 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.78 121.90 -5.12 0.70 N 28 2 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.96 121.90 -4.94 0.70 N 29 2 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.88 117.00 -3.12 0.50 N 30 2 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.27 117.70 3.57 0.50 N 31 2 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.89 118.60 -4.71 0.60 N 32 2 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.77 117.00 -3.23 0.50 N 33 2 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.29 117.70 3.59 0.50 N 34 2 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.64 118.60 -4.96 0.60 N 35 2 C4 B A 20 ? ? C5 B A 20 ? ? C6 B A 20 ? ? 113.98 117.00 -3.02 0.50 N 36 2 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.39 117.70 3.69 0.50 N 37 2 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 113.98 118.60 -4.62 0.60 N 38 2 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 117.03 121.90 -4.87 0.70 N 39 2 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 116.95 121.90 -4.95 0.70 N 40 3 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.00 121.90 -4.90 0.70 N 41 3 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.81 117.00 -3.19 0.50 N 42 3 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.28 117.70 3.58 0.50 N 43 3 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.91 118.60 -4.69 0.60 N 44 3 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.10 121.90 -4.80 0.70 N 45 3 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.63 121.90 -4.27 0.70 N 46 3 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.86 121.90 -5.04 0.70 N 47 3 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.69 121.90 -5.21 0.70 N 48 3 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.87 121.90 -5.03 0.70 N 49 3 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.84 117.00 -3.16 0.50 N 50 3 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.27 117.70 3.57 0.50 N 51 3 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.76 118.60 -4.84 0.60 N 52 3 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.84 117.00 -3.16 0.50 N 53 3 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.25 117.70 3.55 0.50 N 54 3 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.60 118.60 -5.00 0.60 N 55 3 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.41 117.70 3.71 0.50 N 56 3 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.00 118.60 -4.60 0.60 N 57 3 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.96 121.90 -4.94 0.70 N 58 3 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.06 121.90 -4.84 0.70 N 59 4 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.01 121.90 -4.89 0.70 N 60 4 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.76 117.00 -3.24 0.50 N 61 4 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.31 117.70 3.61 0.50 N 62 4 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.85 118.60 -4.75 0.60 N 63 4 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.10 121.90 -4.80 0.70 N 64 4 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.86 121.90 -5.04 0.70 N 65 4 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.76 121.90 -5.14 0.70 N 66 4 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.93 121.90 -4.97 0.70 N 67 4 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.77 117.00 -3.23 0.50 N 68 4 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.41 117.70 3.71 0.50 N 69 4 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.86 118.60 -4.74 0.60 N 70 4 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.81 117.00 -3.19 0.50 N 71 4 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.31 117.70 3.61 0.50 N 72 4 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.62 118.60 -4.98 0.60 N 73 4 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.42 117.70 3.72 0.50 N 74 4 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.04 118.60 -4.56 0.60 N 75 4 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 117.05 121.90 -4.85 0.70 N 76 4 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.04 121.90 -4.86 0.70 N 77 5 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.07 121.90 -4.83 0.70 N 78 5 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.89 117.00 -3.11 0.50 N 79 5 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.26 117.70 3.56 0.50 N 80 5 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.01 118.60 -4.59 0.60 N 81 5 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 116.94 121.90 -4.96 0.70 N 82 5 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.65 121.90 -4.25 0.70 N 83 5 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.88 121.90 -5.02 0.70 N 84 5 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.76 121.90 -5.14 0.70 N 85 5 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.90 121.90 -5.00 0.70 N 86 5 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.77 117.00 -3.23 0.50 N 87 5 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.43 117.70 3.73 0.50 N 88 5 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.74 118.60 -4.86 0.60 N 89 5 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.93 117.00 -3.07 0.50 N 90 5 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.15 117.70 3.45 0.50 N 91 5 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.64 118.60 -4.96 0.60 N 92 5 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.39 117.70 3.69 0.50 N 93 5 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 113.91 118.60 -4.69 0.60 N 94 5 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 117.10 121.90 -4.80 0.70 N 95 5 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 116.96 121.90 -4.94 0.70 N 96 6 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.07 121.90 -4.83 0.70 N 97 6 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.77 117.00 -3.23 0.50 N 98 6 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.31 117.70 3.61 0.50 N 99 6 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.94 118.60 -4.66 0.60 N 100 6 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.03 121.90 -4.87 0.70 N 101 6 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.62 121.90 -4.28 0.70 N 102 6 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.94 121.90 -4.96 0.70 N 103 6 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.82 121.90 -5.08 0.70 N 104 6 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.09 121.90 -4.81 0.70 N 105 6 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.77 117.00 -3.23 0.50 N 106 6 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.34 117.70 3.64 0.50 N 107 6 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.80 118.60 -4.80 0.60 N 108 6 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.87 117.00 -3.13 0.50 N 109 6 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.27 117.70 3.57 0.50 N 110 6 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.72 118.60 -4.88 0.60 N 111 6 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.41 117.70 3.71 0.50 N 112 6 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.05 118.60 -4.55 0.60 N 113 6 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.93 121.90 -4.97 0.70 N 114 6 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.07 121.90 -4.83 0.70 N 115 7 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.15 121.90 -4.75 0.70 N 116 7 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.82 117.00 -3.18 0.50 N 117 7 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.26 117.70 3.56 0.50 N 118 7 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.85 118.60 -4.75 0.60 N 119 7 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.01 121.90 -4.89 0.70 N 120 7 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.60 121.90 -4.30 0.70 N 121 7 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.85 121.90 -5.05 0.70 N 122 7 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.91 121.90 -4.99 0.70 N 123 7 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.97 121.90 -4.93 0.70 N 124 7 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.82 117.00 -3.18 0.50 N 125 7 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.31 117.70 3.61 0.50 N 126 7 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.87 118.60 -4.73 0.60 N 127 7 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.91 117.00 -3.09 0.50 N 128 7 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.24 117.70 3.54 0.50 N 129 7 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.62 118.60 -4.98 0.60 N 130 7 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.42 117.70 3.72 0.50 N 131 7 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.06 118.60 -4.54 0.60 N 132 7 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.97 121.90 -4.93 0.70 N 133 7 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.04 121.90 -4.86 0.70 N 134 8 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.01 121.90 -4.89 0.70 N 135 8 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.71 117.00 -3.29 0.50 N 136 8 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.49 117.70 3.79 0.50 N 137 8 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.79 118.60 -4.81 0.60 N 138 8 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.03 121.90 -4.87 0.70 N 139 8 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.61 121.90 -4.29 0.70 N 140 8 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.85 121.90 -5.05 0.70 N 141 8 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.80 121.90 -5.10 0.70 N 142 8 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 117.10 121.90 -4.80 0.70 N 143 8 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.86 117.00 -3.14 0.50 N 144 8 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.34 117.70 3.64 0.50 N 145 8 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.68 118.60 -4.92 0.60 N 146 8 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.86 117.00 -3.14 0.50 N 147 8 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.25 117.70 3.55 0.50 N 148 8 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.50 118.60 -5.10 0.60 N 149 8 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.43 117.70 3.73 0.50 N 150 8 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.05 118.60 -4.55 0.60 N 151 8 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.95 121.90 -4.95 0.70 N 152 8 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.09 121.90 -4.81 0.70 N 153 9 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.08 121.90 -4.82 0.70 N 154 9 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.79 117.00 -3.21 0.50 N 155 9 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.34 117.70 3.64 0.50 N 156 9 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 113.87 118.60 -4.73 0.60 N 157 9 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.00 121.90 -4.90 0.70 N 158 9 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.69 121.90 -4.21 0.70 N 159 9 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.91 121.90 -4.99 0.70 N 160 9 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.78 121.90 -5.12 0.70 N 161 9 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.99 121.90 -4.91 0.70 N 162 9 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.83 117.00 -3.17 0.50 N 163 9 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.26 117.70 3.56 0.50 N 164 9 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.90 118.60 -4.70 0.60 N 165 9 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.82 117.00 -3.18 0.50 N 166 9 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.24 117.70 3.54 0.50 N 167 9 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.59 118.60 -5.01 0.60 N 168 9 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.44 117.70 3.74 0.50 N 169 9 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 113.89 118.60 -4.71 0.60 N 170 9 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 117.13 121.90 -4.77 0.70 N 171 9 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.08 121.90 -4.82 0.70 N 172 10 N3 A C 2 ? ? C2 A C 2 ? ? O2 A C 2 ? ? 117.00 121.90 -4.90 0.70 N 173 10 C4 A A 3 ? ? C5 A A 3 ? ? C6 A A 3 ? ? 113.85 117.00 -3.15 0.50 N 174 10 C5 A A 3 ? ? C6 A A 3 ? ? N1 A A 3 ? ? 121.28 117.70 3.58 0.50 N 175 10 N1 A A 3 ? ? C6 A A 3 ? ? N6 A A 3 ? ? 114.05 118.60 -4.55 0.60 N 176 10 N3 A C 5 ? ? C2 A C 5 ? ? O2 A C 5 ? ? 117.04 121.90 -4.86 0.70 N 177 10 N3 A C 10 ? ? C2 A C 10 ? ? O2 A C 10 ? ? 116.89 121.90 -5.01 0.70 N 178 10 N3 A C 11 ? ? C2 A C 11 ? ? O2 A C 11 ? ? 116.84 121.90 -5.06 0.70 N 179 10 N3 B C 14 ? ? C2 B C 14 ? ? O2 B C 14 ? ? 116.95 121.90 -4.95 0.70 N 180 10 C4 B A 15 ? ? C5 B A 15 ? ? C6 B A 15 ? ? 113.77 117.00 -3.23 0.50 N 181 10 C5 B A 15 ? ? C6 B A 15 ? ? N1 B A 15 ? ? 121.34 117.70 3.64 0.50 N 182 10 N1 B A 15 ? ? C6 B A 15 ? ? N6 B A 15 ? ? 113.69 118.60 -4.91 0.60 N 183 10 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.81 117.00 -3.19 0.50 N 184 10 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.29 117.70 3.59 0.50 N 185 10 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.58 118.60 -5.02 0.60 N 186 10 C5 B A 20 ? ? C6 B A 20 ? ? N1 B A 20 ? ? 121.42 117.70 3.72 0.50 N 187 10 N1 B A 20 ? ? C6 B A 20 ? ? N6 B A 20 ? ? 114.11 118.60 -4.49 0.60 N 188 10 N3 B C 22 ? ? C2 B C 22 ? ? O2 B C 22 ? ? 116.95 121.90 -4.95 0.70 N 189 10 N3 B C 25 ? ? C2 B C 25 ? ? O2 B C 25 ? ? 117.01 121.90 -4.89 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G B 21 ? ? 0.069 'SIDE CHAIN' 2 3 G B 21 ? ? 0.062 'SIDE CHAIN' 3 4 G B 21 ? ? 0.065 'SIDE CHAIN' 4 6 G B 21 ? ? 0.067 'SIDE CHAIN' 5 9 G B 21 ? ? 0.063 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7A3Y 'double helix' 7A3Y 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 12 1_555 -0.423 -0.099 0.100 -3.488 -5.731 -0.473 1 A_G1:C25_B A 1 ? B 25 ? 19 1 1 A C 2 1_555 B G 11 1_555 0.355 -0.113 0.121 0.611 -9.373 -0.324 2 A_C2:G24_B A 2 ? B 24 ? 19 1 1 A A 3 1_555 B U 10 1_555 0.137 -0.003 -0.086 -2.553 -12.891 -1.390 3 A_A3:U23_B A 3 ? B 23 ? 20 1 1 A G 4 1_555 B C 9 1_555 -0.324 -0.090 0.006 -7.538 -14.403 0.091 4 A_G4:C22_B A 4 ? B 22 ? 19 1 1 A C 5 1_555 B G 8 1_555 0.401 -0.112 0.337 -8.469 -12.033 0.582 5 A_C5:G21_B A 5 ? B 21 ? 19 1 1 A U 6 1_555 B A 7 1_555 -0.071 0.004 0.034 -6.783 -4.115 -1.622 6 A_U6:A20_B A 6 ? B 20 ? 20 1 1 A G 8 1_555 B U 6 1_555 -2.401 -0.426 -0.015 2.808 -7.420 1.872 7 A_G8:U19_B A 8 ? B 19 ? 28 1 1 A U 9 1_555 B A 5 1_555 -0.175 0.012 -0.235 4.021 -12.756 -0.716 8 A_U9:A18_B A 9 ? B 18 ? 20 1 1 A C 10 1_555 B G 4 1_555 0.446 -0.126 0.152 -2.601 -6.431 -0.003 9 A_C10:G17_B A 10 ? B 17 ? 19 1 1 A C 11 1_555 B G 3 1_555 0.415 -0.121 0.015 0.611 -8.149 -0.300 10 A_C11:G16_B A 11 ? B 16 ? 19 1 1 A U 12 1_555 B A 2 1_555 -0.108 0.002 -0.092 0.886 -12.429 -1.009 11 A_U12:A15_B A 12 ? B 15 ? 20 1 1 A G 13 1_555 B C 1 1_555 -0.319 -0.090 0.056 -3.912 -13.770 -0.219 12 A_G13:C14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 12 1_555 A C 2 1_555 B G 11 1_555 -0.109 -2.075 3.244 0.662 1.980 33.283 -3.937 0.297 3.117 3.453 -1.154 33.347 1 AA_G1C2:G24C25_BB A 1 ? B 25 ? A 2 ? B 24 ? 1 A C 2 1_555 B G 11 1_555 A A 3 1_555 B U 10 1_555 -0.035 -1.657 3.284 2.533 10.746 31.609 -4.523 0.448 2.588 19.017 -4.483 33.435 2 AA_C2A3:U23G24_BB A 2 ? B 24 ? A 3 ? B 23 ? 1 A A 3 1_555 B U 10 1_555 A G 4 1_555 B C 9 1_555 0.066 -1.899 3.335 -1.030 8.854 29.485 -5.202 -0.313 2.662 16.915 1.968 30.774 3 AA_A3G4:C22U23_BB A 3 ? B 23 ? A 4 ? B 22 ? 1 A G 4 1_555 B C 9 1_555 A C 5 1_555 B G 8 1_555 0.119 -1.758 3.321 -0.638 4.360 35.120 -3.523 -0.287 3.085 7.191 1.053 35.387 4 AA_G4C5:G21C22_BB A 4 ? B 22 ? A 5 ? B 21 ? 1 A C 5 1_555 B G 8 1_555 A U 6 1_555 B A 7 1_555 0.405 -1.544 3.206 6.841 2.011 29.178 -3.387 0.596 3.108 3.918 -13.330 30.019 5 AA_C5U6:A20G21_BB A 5 ? B 21 ? A 6 ? B 20 ? 1 A U 6 1_555 B A 7 1_555 A G 8 1_555 B U 6 1_555 0.059 -3.080 6.646 5.263 -9.771 6.023 15.095 15.410 5.582 -54.233 -29.211 12.623 6 AA_U6G8:U19A20_BB A 6 ? B 20 ? A 8 ? B 19 ? 1 A G 8 1_555 B U 6 1_555 A U 9 1_555 B A 5 1_555 -0.224 -2.059 3.323 0.574 0.816 38.959 -3.186 0.405 3.277 1.223 -0.861 38.971 7 AA_G8U9:A18U19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A U 9 1_555 B A 5 1_555 A C 10 1_555 B G 4 1_555 0.115 -2.149 3.430 -1.567 8.471 32.683 -5.028 -0.443 2.793 14.737 2.727 33.770 8 AA_U9C10:G17A18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A C 10 1_555 B G 4 1_555 A C 11 1_555 B G 3 1_555 -0.133 -2.028 3.140 2.100 4.684 30.666 -4.603 0.616 2.792 8.779 -3.937 31.083 9 AA_C10C11:G16G17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A C 11 1_555 B G 3 1_555 A U 12 1_555 B A 2 1_555 -0.033 -1.780 3.215 2.017 7.684 28.800 -4.915 0.447 2.653 15.089 -3.961 29.853 10 AA_C11U12:A15G16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A U 12 1_555 B A 2 1_555 A G 13 1_555 B C 1 1_555 0.154 -1.528 3.323 -0.863 14.514 31.875 -4.562 -0.376 2.416 24.875 1.479 34.957 11 AA_U12G13:C14A15_BB A 12 ? B 15 ? A 13 ? B 14 ? # _pdbx_audit_support.funding_organization 'Slovenian Research Agency' _pdbx_audit_support.country Slovenia _pdbx_audit_support.grant_number P1-0242 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BER _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BER _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name BERBERINE _pdbx_entity_nonpoly.comp_id BER # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details 'NMR observables' #