HEADER DE NOVO PROTEIN 20-AUG-20 7A50 TITLE CRYSTAL STRUCTURE OF THE APH COILED-COIL IN COMPLEX WITH NANOBODY NB26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY NB26; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COILED-COIL APH; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: LLAMA; SOURCE 4 ORGANISM_TAXID: 9844; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS COILED-COIL, NANOBODY, ANTIBODY, PROTEIN DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HADZI REVDAT 3 01-MAY-24 7A50 1 REMARK REVDAT 2 11-AUG-21 7A50 1 REMARK REVDAT 1 05-MAY-21 7A50 0 JRNL AUTH A.MAJERLE,S.HADZI,J.AUPIC,T.SATLER,F.LAPENTA,Z.STRMSEK, JRNL AUTH 2 J.LAH,R.LORIS,R.JERALA JRNL TITL A NANOBODY TOOLBOX TARGETING DIMERIC COILED-COIL MODULES FOR JRNL TITL 2 FUNCTIONALIZATION OF DESIGNED PROTEIN ORIGAMI STRUCTURES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33893235 JRNL DOI 10.1073/PNAS.2021899118 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.3048 - 3.4173 1.00 2820 148 0.1622 0.2019 REMARK 3 2 3.4173 - 2.9854 1.00 2819 149 0.2098 0.2755 REMARK 3 3 2.9854 - 2.7125 1.00 2804 147 0.2107 0.2392 REMARK 3 4 2.7125 - 2.5181 1.00 2786 147 0.2148 0.2712 REMARK 3 5 2.5181 - 2.3697 1.00 2787 147 0.2071 0.2504 REMARK 3 6 2.3697 - 2.2510 1.00 2801 147 0.2223 0.2681 REMARK 3 7 2.2510 - 2.1530 1.00 2776 146 0.2477 0.2934 REMARK 3 8 2.1530 - 2.0701 1.00 2787 147 0.2802 0.3266 REMARK 3 9 2.0701 - 1.9990 0.95 2646 140 0.3497 0.3772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2691 REMARK 3 ANGLE : 1.001 3629 REMARK 3 CHIRALITY : 0.054 376 REMARK 3 PLANARITY : 0.006 479 REMARK 3 DIHEDRAL : 19.418 1621 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8191 14.5032 9.1914 REMARK 3 T TENSOR REMARK 3 T11: 0.7084 T22: 0.8170 REMARK 3 T33: 0.6908 T12: 0.0538 REMARK 3 T13: 0.1569 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 4.3185 L22: 8.2518 REMARK 3 L33: 6.4061 L12: -1.7284 REMARK 3 L13: 2.3709 L23: 0.7754 REMARK 3 S TENSOR REMARK 3 S11: -0.4284 S12: 1.0770 S13: 0.1968 REMARK 3 S21: -0.8455 S22: 0.4435 S23: -1.1856 REMARK 3 S31: 0.7003 S32: 0.8670 S33: -0.0240 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1529 33.6086 10.4421 REMARK 3 T TENSOR REMARK 3 T11: 0.7415 T22: 0.7433 REMARK 3 T33: 1.0125 T12: -0.0810 REMARK 3 T13: 0.2293 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 4.8648 L22: 4.0686 REMARK 3 L33: 9.1533 L12: 4.4263 REMARK 3 L13: -6.5423 L23: -6.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.5184 S12: 1.1789 S13: -0.4475 REMARK 3 S21: -0.7066 S22: 0.7405 S23: -2.2488 REMARK 3 S31: 0.4071 S32: -0.1177 S33: 0.1361 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5459 18.3538 8.8614 REMARK 3 T TENSOR REMARK 3 T11: 0.7955 T22: 0.5515 REMARK 3 T33: 0.5492 T12: -0.0286 REMARK 3 T13: 0.0766 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 4.7152 L22: 8.2296 REMARK 3 L33: 4.2731 L12: -2.9343 REMARK 3 L13: -1.1387 L23: -0.4957 REMARK 3 S TENSOR REMARK 3 S11: 0.4493 S12: 0.1132 S13: -0.5262 REMARK 3 S21: -1.4449 S22: -0.4692 S23: -1.0619 REMARK 3 S31: 0.6934 S32: -0.2872 S33: -0.0988 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4946 17.5387 15.0822 REMARK 3 T TENSOR REMARK 3 T11: 0.5433 T22: 0.4164 REMARK 3 T33: 0.4118 T12: -0.0586 REMARK 3 T13: 0.0478 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 6.3355 L22: 6.2256 REMARK 3 L33: 7.6167 L12: -3.8796 REMARK 3 L13: -1.3189 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.0576 S13: 0.1150 REMARK 3 S21: 0.1994 S22: 0.0349 S23: -0.2049 REMARK 3 S31: 0.8251 S32: -0.1413 S33: -0.0659 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3246 18.9020 10.0814 REMARK 3 T TENSOR REMARK 3 T11: 0.6327 T22: 0.4440 REMARK 3 T33: 0.4074 T12: -0.1460 REMARK 3 T13: 0.0013 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 4.3473 L22: 9.3761 REMARK 3 L33: 3.4089 L12: -3.0318 REMARK 3 L13: -0.0593 L23: -0.8962 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.6240 S13: -0.0031 REMARK 3 S21: -0.6692 S22: 0.1922 S23: 0.3034 REMARK 3 S31: 0.8999 S32: -0.3862 S33: -0.0975 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0591 11.4993 5.3639 REMARK 3 T TENSOR REMARK 3 T11: 0.9562 T22: 0.5683 REMARK 3 T33: 0.3382 T12: -0.1411 REMARK 3 T13: 0.1863 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 5.6806 L22: 7.9332 REMARK 3 L33: 2.1343 L12: -2.4469 REMARK 3 L13: 0.3917 L23: 1.7903 REMARK 3 S TENSOR REMARK 3 S11: -0.0525 S12: 0.7057 S13: -0.2443 REMARK 3 S21: -0.7448 S22: 0.2328 S23: -0.5873 REMARK 3 S31: 0.7963 S32: -0.0938 S33: -0.1335 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2862 34.2662 19.7004 REMARK 3 T TENSOR REMARK 3 T11: 0.4832 T22: 0.4693 REMARK 3 T33: 0.5979 T12: -0.0556 REMARK 3 T13: 0.0370 T23: 0.1407 REMARK 3 L TENSOR REMARK 3 L11: 6.5932 L22: 3.5348 REMARK 3 L33: 2.5716 L12: 2.9004 REMARK 3 L13: -4.5094 L23: -1.5421 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.1520 S13: -0.8425 REMARK 3 S21: -0.0106 S22: -0.0729 S23: -0.6515 REMARK 3 S31: -0.0495 S32: 0.0829 S33: 0.1364 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0223 43.1002 8.6606 REMARK 3 T TENSOR REMARK 3 T11: 0.5778 T22: 0.8962 REMARK 3 T33: 1.1495 T12: -0.1419 REMARK 3 T13: -0.0906 T23: 0.1548 REMARK 3 L TENSOR REMARK 3 L11: 4.4628 L22: 3.4393 REMARK 3 L33: 4.8903 L12: -2.8764 REMARK 3 L13: 0.5623 L23: -3.0721 REMARK 3 S TENSOR REMARK 3 S11: 0.1274 S12: 0.7631 S13: -1.8001 REMARK 3 S21: -1.9858 S22: -0.0025 S23: 2.7935 REMARK 3 S31: 0.5670 S32: -1.7056 S33: -0.2240 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 8 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9350 59.7160 8.5738 REMARK 3 T TENSOR REMARK 3 T11: 0.4957 T22: 0.7107 REMARK 3 T33: 0.6647 T12: 0.1401 REMARK 3 T13: -0.1165 T23: 0.2265 REMARK 3 L TENSOR REMARK 3 L11: 3.9555 L22: 4.8298 REMARK 3 L33: 3.4949 L12: -0.9861 REMARK 3 L13: 1.2152 L23: 0.5105 REMARK 3 S TENSOR REMARK 3 S11: -0.2004 S12: 0.0894 S13: 0.3721 REMARK 3 S21: 0.0954 S22: -0.0544 S23: -0.2038 REMARK 3 S31: -0.8918 S32: -0.4571 S33: 0.0100 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4839 38.0594 17.0847 REMARK 3 T TENSOR REMARK 3 T11: 0.5530 T22: 0.8382 REMARK 3 T33: 0.8303 T12: -0.2265 REMARK 3 T13: 0.0172 T23: 0.0831 REMARK 3 L TENSOR REMARK 3 L11: 6.1181 L22: 4.1732 REMARK 3 L33: 2.1278 L12: -4.9804 REMARK 3 L13: 3.3441 L23: -2.5901 REMARK 3 S TENSOR REMARK 3 S11: 0.9098 S12: -0.5079 S13: -1.0557 REMARK 3 S21: -0.6519 S22: -0.6744 S23: 0.8293 REMARK 3 S31: 0.8059 S32: -1.7318 S33: -0.1184 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 33 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0028 51.2828 3.7835 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.6299 REMARK 3 T33: 0.5529 T12: -0.0110 REMARK 3 T13: 0.0067 T23: 0.2281 REMARK 3 L TENSOR REMARK 3 L11: 4.1101 L22: 6.2384 REMARK 3 L33: 4.2303 L12: -2.0157 REMARK 3 L13: 1.6993 L23: -1.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.2836 S12: 0.6442 S13: -0.0291 REMARK 3 S21: -0.6533 S22: -0.4239 S23: -0.3730 REMARK 3 S31: -0.0990 S32: 0.0983 S33: 0.2547 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 52 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0048 54.0330 15.0299 REMARK 3 T TENSOR REMARK 3 T11: 0.4113 T22: 0.5078 REMARK 3 T33: 0.6542 T12: -0.0498 REMARK 3 T13: -0.0316 T23: 0.2458 REMARK 3 L TENSOR REMARK 3 L11: 3.5710 L22: 5.1886 REMARK 3 L33: 4.0125 L12: 0.1101 REMARK 3 L13: -0.7201 L23: -0.6715 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: -0.0042 S13: 0.1761 REMARK 3 S21: 0.2620 S22: -0.3056 S23: -0.5351 REMARK 3 S31: -0.6820 S32: -0.2087 S33: 0.1787 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 81 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6837 56.6437 4.5299 REMARK 3 T TENSOR REMARK 3 T11: 0.6379 T22: 0.6823 REMARK 3 T33: 0.6326 T12: -0.0179 REMARK 3 T13: -0.0133 T23: 0.2915 REMARK 3 L TENSOR REMARK 3 L11: 2.8307 L22: 5.5562 REMARK 3 L33: 2.1780 L12: -2.2750 REMARK 3 L13: 0.9631 L23: 0.2694 REMARK 3 S TENSOR REMARK 3 S11: 0.1928 S12: 0.4360 S13: 0.0646 REMARK 3 S21: -0.7975 S22: -0.3399 S23: -0.2140 REMARK 3 S31: -0.5017 S32: -0.1660 S33: 0.2063 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 97 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7874 45.9693 5.9867 REMARK 3 T TENSOR REMARK 3 T11: 0.5453 T22: 0.6130 REMARK 3 T33: 0.6028 T12: -0.0571 REMARK 3 T13: 0.0104 T23: 0.2352 REMARK 3 L TENSOR REMARK 3 L11: 2.8344 L22: 7.6617 REMARK 3 L33: 2.4914 L12: -3.1791 REMARK 3 L13: 1.4472 L23: -3.6278 REMARK 3 S TENSOR REMARK 3 S11: 0.0838 S12: 0.5224 S13: -0.1054 REMARK 3 S21: -0.5635 S22: -0.2625 S23: -0.2037 REMARK 3 S31: -0.0330 S32: 0.0996 S33: 0.1842 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5276 40.4000 19.0335 REMARK 3 T TENSOR REMARK 3 T11: 0.4138 T22: 0.5043 REMARK 3 T33: 0.7231 T12: -0.0883 REMARK 3 T13: 0.0047 T23: 0.1652 REMARK 3 L TENSOR REMARK 3 L11: 9.2944 L22: 4.1068 REMARK 3 L33: 4.8141 L12: 3.5287 REMARK 3 L13: -5.4109 L23: -2.2414 REMARK 3 S TENSOR REMARK 3 S11: 0.7419 S12: 0.1022 S13: 0.9622 REMARK 3 S21: 0.2043 S22: -0.1911 S23: -0.2414 REMARK 3 S31: -0.7526 S32: 0.1971 S33: -0.5470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 93 OR RESID REMARK 3 95 THROUGH 124)) REMARK 3 SELECTION : (CHAIN C AND ((RESID 1 AND (NAME CA OR REMARK 3 NAME C OR NAME O )) OR RESID 2 THROUGH 42 REMARK 3 OR (RESID 43 THROUGH 44 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 45 THROUGH 72 OR (RESID 73 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 74 THROUGH 93 OR REMARK 3 RESID 95 THROUGH 124)) REMARK 3 ATOM PAIRS NUMBER : 1063 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 411 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978570 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29399 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 43.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.070 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.22 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODELER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE PH 5, 20 % W/V PEG 6000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 99.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.22119 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.39667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 99.11000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.22119 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 19.39667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 99.11000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.22119 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 19.39667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 99.11000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 57.22119 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.39667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 99.11000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 57.22119 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 19.39667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 99.11000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 57.22119 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 19.39667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 114.44237 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 38.79333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 114.44237 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 38.79333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 114.44237 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 38.79333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 114.44237 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 38.79333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 114.44237 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 38.79333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 114.44237 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 38.79333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 128 REMARK 465 ASP A 129 REMARK 465 VAL A 130 REMARK 465 PRO A 131 REMARK 465 ASP A 132 REMARK 465 TYR A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 GLY A 136 REMARK 465 ARG A 137 REMARK 465 ALA A 138 REMARK 465 ARG C 125 REMARK 465 TYR C 126 REMARK 465 PRO C 127 REMARK 465 TYR C 128 REMARK 465 ASP C 129 REMARK 465 VAL C 130 REMARK 465 PRO C 131 REMARK 465 ASP C 132 REMARK 465 TYR C 133 REMARK 465 GLY C 134 REMARK 465 SER C 135 REMARK 465 GLY C 136 REMARK 465 ARG C 137 REMARK 465 ALA C 138 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 N CB CG CD OE1 NE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLN C 1 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -104.89 -146.38 REMARK 500 ARG C 27 -166.89 -161.06 REMARK 500 SER C 52 -107.73 -147.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A48 RELATED DB: PDB REMARK 900 RELATED ID: 7A4T RELATED DB: PDB REMARK 900 RELATED ID: 7A4Y RELATED DB: PDB REMARK 900 RELATED ID: 7A4D RELATED DB: PDB DBREF 7A50 A 1 138 PDB 7A50 7A50 1 138 DBREF 7A50 B 0 41 PDB 7A50 7A50 0 41 DBREF 7A50 C 1 138 PDB 7A50 7A50 1 138 DBREF 7A50 D 0 41 PDB 7A50 7A50 0 41 SEQRES 1 A 138 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 138 ALA GLY ASP SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 138 ARG THR PHE SER THR TYR PRO MET GLY TRP PHE ARG GLN SEQRES 4 A 138 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA SER SER SEQRES 5 A 138 SER ARG ALA TYR TYR ALA ASP SER VAL LYS GLY ARG PHE SEQRES 6 A 138 THR ILE SER ARG ASN ASN ALA LYS ASN THR VAL TYR LEU SEQRES 7 A 138 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 8 A 138 TYR CYS VAL ALA ASP SER SER PRO TYR TYR ARG ARG TYR SEQRES 9 A 138 ASP ALA ALA GLN ASP TYR ASP TYR TRP GLY GLN GLY THR SEQRES 10 A 138 GLN VAL THR VAL SER SER GLY ARG TYR PRO TYR ASP VAL SEQRES 11 A 138 PRO ASP TYR GLY SER GLY ARG ALA SEQRES 1 B 42 ACE LEU GLU GLU GLU LEU LYS GLN LEU GLU GLU GLU LEU SEQRES 2 B 42 GLN ALA ILE GLU GLU GLN LEU ALA GLN LEU GLN TRP LYS SEQRES 3 B 42 ALA GLN ALA ARG LYS GLU LYS LEU ALA GLN LEU LYS GLU SEQRES 4 B 42 LYS LEU NH2 SEQRES 1 C 138 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 138 ALA GLY ASP SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 138 ARG THR PHE SER THR TYR PRO MET GLY TRP PHE ARG GLN SEQRES 4 C 138 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA SER SER SEQRES 5 C 138 SER ARG ALA TYR TYR ALA ASP SER VAL LYS GLY ARG PHE SEQRES 6 C 138 THR ILE SER ARG ASN ASN ALA LYS ASN THR VAL TYR LEU SEQRES 7 C 138 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 8 C 138 TYR CYS VAL ALA ASP SER SER PRO TYR TYR ARG ARG TYR SEQRES 9 C 138 ASP ALA ALA GLN ASP TYR ASP TYR TRP GLY GLN GLY THR SEQRES 10 C 138 GLN VAL THR VAL SER SER GLY ARG TYR PRO TYR ASP VAL SEQRES 11 C 138 PRO ASP TYR GLY SER GLY ARG ALA SEQRES 1 D 42 ACE LEU GLU GLU GLU LEU LYS GLN LEU GLU GLU GLU LEU SEQRES 2 D 42 GLN ALA ILE GLU GLU GLN LEU ALA GLN LEU GLN TRP LYS SEQRES 3 D 42 ALA GLN ALA ARG LYS GLU LYS LEU ALA GLN LEU LYS GLU SEQRES 4 D 42 LYS LEU NH2 HET ACE B 0 3 HET NH2 B 41 1 HET ACE D 0 3 HET NH2 D 41 1 HET EDO A 201 4 HET EDO C 201 4 HET EDO C 202 4 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACE 2(C2 H4 O) FORMUL 2 NH2 2(H2 N) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *123(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 ASP A 59 LYS A 62 5 4 HELIX 3 AA3 LYS A 84 THR A 88 5 5 HELIX 4 AA4 ALA A 106 TYR A 110 5 5 HELIX 5 AA5 LEU B 1 LEU B 40 1 40 HELIX 6 AA6 ASP C 59 LYS C 62 5 4 HELIX 7 AA7 LYS C 84 THR C 88 5 5 HELIX 8 AA8 ALA C 106 TYR C 110 5 5 HELIX 9 AA9 LEU D 1 LEU D 40 1 40 SHEET 1 AA1 4 LEU A 4 SER A 7 0 SHEET 2 AA1 4 LEU A 18 ALA A 24 -1 O ALA A 23 N GLN A 5 SHEET 3 AA1 4 THR A 75 MET A 80 -1 O MET A 80 N LEU A 18 SHEET 4 AA1 4 PHE A 65 ASN A 70 -1 N SER A 68 O TYR A 77 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 117 SER A 122 1 O THR A 120 N GLY A 10 SHEET 3 AA2 6 ALA A 89 ALA A 95 -1 N TYR A 91 O THR A 117 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N PHE A 37 O TYR A 92 SHEET 5 AA2 6 ARG A 45 SER A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 ALA A 55 TYR A 57 -1 O TYR A 56 N ALA A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 117 SER A 122 1 O THR A 120 N GLY A 10 SHEET 3 AA3 4 ALA A 89 ALA A 95 -1 N TYR A 91 O THR A 117 SHEET 4 AA3 4 TYR A 112 TRP A 113 -1 O TYR A 112 N ALA A 95 SHEET 1 AA4 4 LEU C 4 SER C 7 0 SHEET 2 AA4 4 LEU C 18 ALA C 24 -1 O SER C 21 N SER C 7 SHEET 3 AA4 4 THR C 75 MET C 80 -1 O MET C 80 N LEU C 18 SHEET 4 AA4 4 PHE C 65 ASN C 70 -1 N THR C 66 O GLN C 79 SHEET 1 AA5 6 GLY C 10 GLN C 13 0 SHEET 2 AA5 6 THR C 117 SER C 122 1 O THR C 120 N VAL C 12 SHEET 3 AA5 6 ALA C 89 ALA C 95 -1 N TYR C 91 O THR C 117 SHEET 4 AA5 6 MET C 34 GLN C 39 -1 N PHE C 37 O TYR C 92 SHEET 5 AA5 6 GLU C 46 SER C 51 -1 O GLU C 46 N ARG C 38 SHEET 6 AA5 6 ALA C 55 TYR C 57 -1 O TYR C 56 N ALA C 50 SHEET 1 AA6 4 GLY C 10 GLN C 13 0 SHEET 2 AA6 4 THR C 117 SER C 122 1 O THR C 120 N VAL C 12 SHEET 3 AA6 4 ALA C 89 ALA C 95 -1 N TYR C 91 O THR C 117 SHEET 4 AA6 4 TYR C 112 TRP C 113 -1 O TYR C 112 N ALA C 95 SSBOND 1 CYS A 22 CYS A 93 1555 1555 2.04 SSBOND 2 CYS C 22 CYS C 93 1555 1555 2.03 LINK C ACE B 0 N LEU B 1 1555 1555 1.34 LINK C LEU B 40 N NH2 B 41 1555 1555 1.33 LINK C ACE D 0 N LEU D 1 1555 1555 1.34 LINK C LEU D 40 N NH2 D 41 1555 1555 1.33 CRYST1 198.220 198.220 58.190 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005045 0.002913 0.000000 0.00000 SCALE2 0.000000 0.005825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017185 0.00000