HEADER ANTIMICROBIAL PROTEIN 24-AUG-20 7A63 TITLE CRYSTAL STRUCTURE OF L1 WITH HYDROLYZED FAROPENEM (IMINE, RING-CLOSED TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CLASS B3 METALLO-BETA-LACTAMASE L1, BETA-LACTAMASE TYPE II, COMPND 5 PENICILLINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STENOTROPHOMONAS MALTOPHILIA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS MALTOPHILIA; SOURCE 4 ORGANISM_TAXID: 40324; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SOLUBL21 KEYWDS METALLO-BETA-LACTAMASE, ANTIBIOTIC, FAROPENEM, CATALYSIS, KEYWDS 2 ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 31-JAN-24 7A63 1 REMARK REVDAT 2 03-MAR-21 7A63 1 JRNL REVDAT 1 24-FEB-21 7A63 0 JRNL AUTH A.LUCIC,P.HINCHLIFFE,T.R.MALLA,C.L.TOOKE,J.BREM,K.CALVOPINA, JRNL AUTH 2 C.T.LOHANS,P.RABE,M.A.MCDONOUGH,T.ARMISTEAD,A.M.ORVILLE, JRNL AUTH 3 J.SPENCER,C.J.SCHOFIELD JRNL TITL FAROPENEM REACTS WITH SERINE AND METALLO-BETA-LACTAMASES TO JRNL TITL 2 GIVE MULTIPLE PRODUCTS. JRNL REF EUR.J.MED.CHEM. V. 215 13257 2021 JRNL REFN ISSN 0223-5234 JRNL PMID 33618159 JRNL DOI 10.1016/J.EJMECH.2021.113257 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.344 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.171 REMARK 3 FREE R VALUE TEST SET COUNT : 2337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.6500 - 4.0363 1.00 2769 149 0.1605 0.1711 REMARK 3 2 4.0363 - 3.2039 1.00 2599 141 0.1474 0.1754 REMARK 3 3 3.2039 - 2.7989 1.00 2563 147 0.1644 0.1908 REMARK 3 4 2.7989 - 2.5430 1.00 2556 131 0.1500 0.1765 REMARK 3 5 2.5430 - 2.3608 1.00 2518 147 0.1499 0.1663 REMARK 3 6 2.3608 - 2.2216 1.00 2523 139 0.1611 0.1825 REMARK 3 7 2.2216 - 2.1103 1.00 2492 141 0.1700 0.1817 REMARK 3 8 2.1103 - 2.0184 1.00 2520 135 0.1796 0.2130 REMARK 3 9 2.0184 - 1.9407 1.00 2477 145 0.1910 0.2082 REMARK 3 10 1.9407 - 1.8738 1.00 2486 143 0.1978 0.2357 REMARK 3 11 1.8738 - 1.8152 1.00 2486 130 0.2120 0.2784 REMARK 3 12 1.8152 - 1.7633 1.00 2515 124 0.2314 0.2703 REMARK 3 13 1.7633 - 1.7169 1.00 2465 132 0.2312 0.2527 REMARK 3 14 1.7169 - 1.6750 1.00 2473 133 0.2470 0.2943 REMARK 3 15 1.6750 - 1.6369 1.00 2477 136 0.2499 0.2936 REMARK 3 16 1.6369 - 1.6020 1.00 2456 136 0.2699 0.3247 REMARK 3 17 1.6020 - 1.5700 1.00 2482 128 0.2936 0.3259 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2145 REMARK 3 ANGLE : 1.071 2942 REMARK 3 CHIRALITY : 0.056 325 REMARK 3 PLANARITY : 0.007 388 REMARK 3 DIHEDRAL : 15.251 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0394 20.0342 -7.7609 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.2586 REMARK 3 T33: 0.2201 T12: -0.0343 REMARK 3 T13: -0.0118 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 0.9045 L22: 1.8373 REMARK 3 L33: 2.3279 L12: 0.4960 REMARK 3 L13: -1.5927 L23: -0.8776 REMARK 3 S TENSOR REMARK 3 S11: 0.1122 S12: -0.2181 S13: 0.0831 REMARK 3 S21: 0.1471 S22: 0.0941 S23: 0.2857 REMARK 3 S31: 0.0051 S32: 0.0464 S33: -0.1807 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2855 21.8889 -8.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.3171 REMARK 3 T33: 0.3640 T12: -0.0708 REMARK 3 T13: -0.0275 T23: 0.1541 REMARK 3 L TENSOR REMARK 3 L11: 2.2783 L22: 2.8847 REMARK 3 L33: 2.4018 L12: -0.4778 REMARK 3 L13: -0.6458 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.1220 S12: 0.0192 S13: -0.1877 REMARK 3 S21: -0.1483 S22: 0.3569 S23: 0.7930 REMARK 3 S31: 0.1514 S32: -0.3508 S33: -0.2256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.9176 29.2957 -9.3194 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.3227 REMARK 3 T33: 0.2848 T12: -0.0678 REMARK 3 T13: -0.0260 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 3.8174 L22: 3.7860 REMARK 3 L33: 2.0515 L12: 0.9939 REMARK 3 L13: 0.1720 L23: 1.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.1477 S12: 0.2166 S13: 0.1069 REMARK 3 S21: -0.1361 S22: 0.3179 S23: 0.7652 REMARK 3 S31: 0.0668 S32: -0.4307 S33: -0.1449 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1119 36.4307 -6.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.2564 REMARK 3 T33: 0.1695 T12: -0.0245 REMARK 3 T13: 0.0145 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 1.1443 L22: 2.8724 REMARK 3 L33: 1.6047 L12: -0.8777 REMARK 3 L13: 0.2029 L23: -0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.1740 S12: -0.1430 S13: -0.1072 REMARK 3 S21: 0.0821 S22: 0.2929 S23: 0.3319 REMARK 3 S31: 0.0093 S32: -0.0733 S33: -0.1038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5429 31.8390 5.4541 REMARK 3 T TENSOR REMARK 3 T11: 0.3091 T22: 0.3259 REMARK 3 T33: 0.1979 T12: 0.1043 REMARK 3 T13: 0.0675 T23: 0.0995 REMARK 3 L TENSOR REMARK 3 L11: 3.2245 L22: 2.8703 REMARK 3 L33: 1.5604 L12: 0.0758 REMARK 3 L13: -0.5709 L23: -0.3501 REMARK 3 S TENSOR REMARK 3 S11: -0.2730 S12: -0.3319 S13: -0.1866 REMARK 3 S21: 0.5177 S22: 0.3957 S23: 0.3226 REMARK 3 S31: 0.1129 S32: -0.1024 S33: -0.1087 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5458 35.8187 13.4664 REMARK 3 T TENSOR REMARK 3 T11: 0.5179 T22: 0.4781 REMARK 3 T33: 0.2147 T12: 0.2139 REMARK 3 T13: 0.0278 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 2.0888 L22: 3.5221 REMARK 3 L33: 6.9469 L12: 3.0640 REMARK 3 L13: -7.5074 L23: -3.6350 REMARK 3 S TENSOR REMARK 3 S11: -0.2561 S12: -0.5804 S13: 0.4275 REMARK 3 S21: 0.9805 S22: 0.4942 S23: 0.3188 REMARK 3 S31: -0.4066 S32: 0.0465 S33: -0.1916 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.9738 18.5411 7.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.3878 T22: 0.4429 REMARK 3 T33: 0.3357 T12: 0.1033 REMARK 3 T13: 0.1172 T23: 0.1999 REMARK 3 L TENSOR REMARK 3 L11: 1.5872 L22: 1.3967 REMARK 3 L33: 3.4955 L12: -0.3320 REMARK 3 L13: -1.0010 L23: 1.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.1055 S12: -0.1833 S13: -0.1552 REMARK 3 S21: 0.5899 S22: 0.3314 S23: 0.5179 REMARK 3 S31: 0.3440 S32: -0.0674 S33: -0.1811 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3527 28.2448 14.5153 REMARK 3 T TENSOR REMARK 3 T11: 0.4722 T22: 0.5021 REMARK 3 T33: 0.2462 T12: 0.1741 REMARK 3 T13: 0.0051 T23: 0.0940 REMARK 3 L TENSOR REMARK 3 L11: 7.6536 L22: 3.5846 REMARK 3 L33: 0.6174 L12: 3.6706 REMARK 3 L13: 0.3326 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.5884 S13: -0.3049 REMARK 3 S21: 0.6522 S22: 0.1310 S23: -0.1639 REMARK 3 S31: 0.1679 S32: 0.0274 S33: -0.1188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97951 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 52.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 72.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SML REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.75, 2.0 M AMMONIUM REMARK 280 SULPHATE, 1.5% PEG400. 2 UL PROTEIN (15 MG/ML) MIXED WITH 2 UL REMARK 280 RESERVOIR., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.69967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.39933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.69967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.39933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.69967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.39933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.69967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.39933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.19200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.500000 0.866025 0.000000 -52.65000 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 91.19200 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -32.69967 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -32.69967 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 ALA A 1 REMARK 465 ALA A 268 REMARK 465 ARG A 269 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 407 O HOH A 571 2.01 REMARK 500 O HOH A 550 O HOH A 600 2.03 REMARK 500 O HOH A 507 O HOH A 600 2.03 REMARK 500 O HOH A 427 O HOH A 582 2.04 REMARK 500 OE2 GLU A 2 O HOH A 401 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 418 O HOH A 588 4565 2.07 REMARK 500 O HOH A 421 O HOH A 421 9554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 156.43 65.53 REMARK 500 ALA A 85 54.03 -94.54 REMARK 500 HIS A 89 -33.63 -130.43 REMARK 500 ASP A 171 -165.48 -104.18 REMARK 500 TYR A 199 72.49 -152.85 REMARK 500 CYS A 218 67.99 -155.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 29 NE2 REMARK 620 2 HIS A 29 NE2 0.7 REMARK 620 3 HIS A 29 NE2 0.0 0.7 REMARK 620 4 HIS A 29 NE2 0.7 0.0 0.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 84 NE2 REMARK 620 2 HIS A 86 ND1 97.5 REMARK 620 3 HIS A 160 NE2 97.7 104.3 REMARK 620 4 HOH A 423 O 114.5 114.1 124.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 HIS A 89 NE2 87.8 REMARK 620 3 HIS A 225 NE2 93.9 89.8 REMARK 620 4 R3N A 307 N4 99.8 172.3 88.8 REMARK 620 5 R3N A 307 O32 171.3 100.6 84.1 71.8 REMARK 620 6 HOH A 423 O 87.3 98.5 171.6 82.8 93.5 REMARK 620 N 1 2 3 4 5 DBREF 7A63 A 1 269 UNP P52700 BLA1_STEMA 22 290 SEQADV 7A63 GLY A -1 UNP P52700 EXPRESSION TAG SEQADV 7A63 PRO A 0 UNP P52700 EXPRESSION TAG SEQRES 1 A 271 GLY PRO ALA GLU VAL PRO LEU PRO GLN LEU ARG ALA TYR SEQRES 2 A 271 THR VAL ASP ALA SER TRP LEU GLN PRO MET ALA PRO LEU SEQRES 3 A 271 GLN ILE ALA ASP HIS THR TRP GLN ILE GLY THR GLU ASP SEQRES 4 A 271 LEU THR ALA LEU LEU VAL GLN THR PRO ASP GLY ALA VAL SEQRES 5 A 271 LEU LEU ASP GLY GLY MET PRO GLN MET ALA SER HIS LEU SEQRES 6 A 271 LEU ASP ASN MET LYS ALA ARG GLY VAL THR PRO ARG ASP SEQRES 7 A 271 LEU ARG LEU ILE LEU LEU SER HIS ALA HIS ALA ASP HIS SEQRES 8 A 271 ALA GLY PRO VAL ALA GLU LEU LYS ARG ARG THR GLY ALA SEQRES 9 A 271 LYS VAL ALA ALA ASN ALA GLU SER ALA VAL LEU LEU ALA SEQRES 10 A 271 ARG GLY GLY SER ASP ASP LEU HIS PHE GLY ASP GLY ILE SEQRES 11 A 271 THR TYR PRO PRO ALA ASN ALA ASP ARG ILE VAL MET ASP SEQRES 12 A 271 GLY GLU VAL ILE THR VAL GLY GLY ILE VAL PHE THR ALA SEQRES 13 A 271 HIS PHE MET ALA GLY HIS THR PRO GLY SER THR ALA TRP SEQRES 14 A 271 THR TRP THR ASP THR ARG ASN GLY LYS PRO VAL ARG ILE SEQRES 15 A 271 ALA TYR ALA ASP SER LEU SER ALA PRO GLY TYR GLN LEU SEQRES 16 A 271 GLN GLY ASN PRO ARG TYR PRO HIS LEU ILE GLU ASP TYR SEQRES 17 A 271 ARG ARG SER PHE ALA THR VAL ARG ALA LEU PRO CYS ASP SEQRES 18 A 271 VAL LEU LEU THR PRO HIS PRO GLY ALA SER ASN TRP ASP SEQRES 19 A 271 TYR ALA ALA GLY ALA ARG ALA GLY ALA LYS ALA LEU THR SEQRES 20 A 271 CYS LYS ALA TYR ALA ASP ALA ALA GLU GLN LYS PHE ASP SEQRES 21 A 271 GLY GLN LEU ALA LYS GLU THR ALA GLY ALA ARG HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET R3N A 307 35 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM R3N (2R,5S)-2-[(1S,2R)-1-CARBOXY-2-HYDROXY-PROPYL]-5-[(2R)- HETNAM 2 R3N TETRAHYDROFURAN-2-YL]-2,5-DIHYDROTHIAZOLE-4-CARBOXYLIC HETNAM 3 R3N ACID HETSYN R3N (2~{R},5~{S})-2-[(2~{S},3~{R})-1,3-BIS(OXIDANYL)-1- HETSYN 2 R3N OXIDANYLIDENE-BUTAN-2-YL]-5-[(2~{R})-OXOLAN-2-YL]-1,3- HETSYN 3 R3N THIAZOLIDINE-4-CARBOXYLIC ACID FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 R3N C12 H17 N O6 S FORMUL 9 HOH *214(H2 O) HELIX 1 AA1 ASP A 14 GLN A 19 5 6 HELIX 2 AA2 MET A 56 GLN A 58 5 3 HELIX 3 AA3 MET A 59 ARG A 70 1 12 HELIX 4 AA4 THR A 73 ARG A 75 5 3 HELIX 5 AA5 HIS A 86 GLY A 91 1 6 HELIX 6 AA6 PRO A 92 THR A 100 1 9 HELIX 7 AA7 ASN A 107 ARG A 116 1 10 HELIX 8 AA8 HIS A 201 ALA A 215 1 15 HELIX 9 AA9 HIS A 225 ASN A 230 5 6 HELIX 10 AB1 ASP A 232 ALA A 239 5 8 HELIX 11 AB2 THR A 245 GLY A 267 1 23 SHEET 1 AA1 7 LEU A 24 ALA A 27 0 SHEET 2 AA1 7 THR A 30 GLN A 32 -1 O THR A 30 N ILE A 26 SHEET 3 AA1 7 LEU A 41 THR A 45 -1 O LEU A 42 N TRP A 31 SHEET 4 AA1 7 GLY A 48 LEU A 52 -1 O VAL A 50 N VAL A 43 SHEET 5 AA1 7 LEU A 77 LEU A 81 1 O LEU A 81 N LEU A 51 SHEET 6 AA1 7 LYS A 103 ALA A 106 1 O LYS A 103 N ILE A 80 SHEET 7 AA1 7 ARG A 137 ILE A 138 1 O ARG A 137 N ALA A 106 SHEET 1 AA2 5 VAL A 144 VAL A 147 0 SHEET 2 AA2 5 ILE A 150 PHE A 156 -1 O ILE A 150 N VAL A 147 SHEET 3 AA2 5 THR A 165 ARG A 173 -1 O ALA A 166 N HIS A 155 SHEET 4 AA2 5 LYS A 176 TYR A 182 -1 O TYR A 182 N TRP A 167 SHEET 5 AA2 5 VAL A 220 LEU A 222 1 O VAL A 220 N ALA A 181 SSBOND 1 CYS A 218 CYS A 246 1555 1555 2.08 LINK NE2AHIS A 29 ZN ZN A 303 1555 1555 1.86 LINK NE2BHIS A 29 ZN ZN A 303 1555 1555 1.80 LINK NE2AHIS A 29 ZN ZN A 303 1555 11455 1.90 LINK NE2BHIS A 29 ZN ZN A 303 1555 11455 1.83 LINK NE2 HIS A 84 ZN ZN A 301 1555 1555 2.06 LINK ND1 HIS A 86 ZN ZN A 301 1555 1555 2.08 LINK OD2 ASP A 88 ZN ZN A 302 1555 1555 2.12 LINK NE2 HIS A 89 ZN ZN A 302 1555 1555 2.15 LINK NE2 HIS A 160 ZN ZN A 301 1555 1555 2.05 LINK NE2 HIS A 225 ZN ZN A 302 1555 1555 2.11 LINK ZN ZN A 301 O HOH A 423 1555 1555 1.92 LINK ZN ZN A 302 N4 R3N A 307 1555 1555 2.31 LINK ZN ZN A 302 O32 R3N A 307 1555 1555 2.22 LINK ZN ZN A 302 O HOH A 423 1555 1555 2.07 CRYST1 105.300 105.300 98.099 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009497 0.005483 0.000000 0.00000 SCALE2 0.000000 0.010966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010194 0.00000