HEADER OXIDOREDUCTASE 26-AUG-20 7A6Q TITLE CRYSTAL STRUCTURE OF HUMAN ALDEHYDE DEHYDROGENASE 1A3 IN COMPLEX WITH TITLE 2 SELECTIVE NR6 INHIBITOR COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE FAMILY 1 MEMBER A3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALDEHYDE DEHYDROGENASE 6,RETINALDEHYDE DEHYDROGENASE 3, COMPND 5 RALDH3; COMPND 6 EC: 1.2.1.36; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A3, ALDH6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE ISOENZYME ALDH1A3 SELECTIVE INHIBITOR HIGH GRADE KEYWDS 2 GLIOMA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR E.L.M.GELARDI,S.GARAVAGLIA REVDAT 2 31-JAN-24 7A6Q 1 REMARK REVDAT 1 17-FEB-21 7A6Q 0 JRNL AUTH E.L.M.GELARDI,G.COLOMBO,F.PICARAZZI,D.M.FERRARIS,A.MANGIONE, JRNL AUTH 2 G.PETRAROLO,E.ARONICA,M.RIZZI,M.MORI,C.LA MOTTA,S.GARAVAGLIA JRNL TITL A SELECTIVE COMPETITIVE INHIBITOR OF ALDEHYDE DEHYDROGENASE JRNL TITL 2 1A3 HINDERS CANCER CELL GROWTH, INVASIVENESS AND STEMNESS IN JRNL TITL 3 VITRO. JRNL REF CANCERS (BASEL) V. 13 2021 JRNL REFN ESSN 2072-6694 JRNL PMID 33478031 JRNL DOI 10.3390/CANCERS13020356 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.1_3865 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3200 - 6.1300 0.99 2834 157 0.2060 0.2308 REMARK 3 2 6.1300 - 4.8700 0.99 2719 143 0.2032 0.2482 REMARK 3 3 4.8700 - 4.2500 1.00 2678 171 0.1660 0.2245 REMARK 3 4 4.2500 - 3.8700 1.00 2700 140 0.1708 0.2431 REMARK 3 5 3.8700 - 3.5900 1.00 2643 145 0.1780 0.2674 REMARK 3 6 3.5900 - 3.3800 1.00 2678 140 0.1993 0.2545 REMARK 3 7 3.3800 - 3.2100 0.99 2636 145 0.2136 0.2920 REMARK 3 8 3.2100 - 3.0700 1.00 2675 132 0.2313 0.2970 REMARK 3 9 3.0700 - 2.9500 1.00 2651 132 0.2728 0.3489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 19 THROUGH 507 OR REMARK 3 RESID 601 THROUGH 701 OR RESID 901 OR REMARK 3 RESID 1101 THROUGH 1201)) REMARK 3 SELECTION : (CHAIN B AND (RESID 19 THROUGH 507 OR REMARK 3 RESID 601 THROUGH 701 OR RESID 901 OR REMARK 3 RESID 1101 THROUGH 1201)) REMARK 3 ATOM PAIRS NUMBER : 4703 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25558 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 48.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : 0.78300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5FHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.58100 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.32300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.58100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.32300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 GLU A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 ARG A 15 REMARK 465 LYS A 16 REMARK 465 PRO A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 508 REMARK 465 ASP A 509 REMARK 465 LYS A 510 REMARK 465 ASN A 511 REMARK 465 PRO A 512 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ASN B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 VAL B 8 REMARK 465 GLU B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 GLN B 12 REMARK 465 PRO B 13 REMARK 465 ASP B 14 REMARK 465 ARG B 15 REMARK 465 LYS B 16 REMARK 465 PRO B 17 REMARK 465 PRO B 18 REMARK 465 GLY B 508 REMARK 465 ASP B 509 REMARK 465 LYS B 510 REMARK 465 ASN B 511 REMARK 465 PRO B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 711 O HOH A 721 2.02 REMARK 500 N GLY B 486 O HOH B 701 2.04 REMARK 500 O HOH A 717 O HOH A 718 2.04 REMARK 500 O HOH B 710 O HOH B 714 2.06 REMARK 500 NH1 ARG A 406 OE2 GLU A 410 2.10 REMARK 500 N GLY A 486 O HOH A 701 2.15 REMARK 500 NZ LYS B 30 O HOH B 702 2.18 REMARK 500 N LEU A 279 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ASP A 388 O7N NAD B 601 3544 2.01 REMARK 500 C ASP A 388 O7N NAD B 601 3544 2.01 REMARK 500 OD1 ASP A 92 OD1 ASP A 159 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 -37.61 -130.54 REMARK 500 ILE A 132 -68.31 -129.70 REMARK 500 THR A 158 -62.91 -139.01 REMARK 500 THR A 239 -68.38 -94.08 REMARK 500 ASN A 273 16.60 -149.56 REMARK 500 LEU A 281 -157.33 -113.16 REMARK 500 GLN A 312 69.68 -112.28 REMARK 500 LEU A 391 69.07 -116.82 REMARK 500 CYS A 467 -177.53 -170.66 REMARK 500 LYS A 481 -132.54 49.49 REMARK 500 LEU A 489 165.44 65.87 REMARK 500 LYS B 30 -37.49 -130.98 REMARK 500 ILE B 132 -67.15 -131.52 REMARK 500 THR B 158 -63.44 -139.55 REMARK 500 PRO B 179 -154.32 -87.64 REMARK 500 THR B 239 -67.82 -93.85 REMARK 500 ASN B 273 17.10 -150.12 REMARK 500 LEU B 281 -155.58 -113.26 REMARK 500 GLN B 312 69.40 -112.72 REMARK 500 ASP B 358 -159.64 -148.57 REMARK 500 LEU B 391 69.18 -113.06 REMARK 500 CYS B 467 -179.39 -171.71 REMARK 500 LYS B 481 -132.33 48.59 REMARK 500 LEU B 489 165.54 67.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 O REMARK 620 2 GLN A 208 O 119.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 R2K B 604 NA1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 121 O REMARK 620 2 R2K B 604 O05 82.8 REMARK 620 N 1 DBREF 7A6Q A 1 512 UNP P47895 AL1A3_HUMAN 1 512 DBREF 7A6Q B 1 512 UNP P47895 AL1A3_HUMAN 1 512 SEQRES 1 A 512 MET ALA THR ALA ASN GLY ALA VAL GLU ASN GLY GLN PRO SEQRES 2 A 512 ASP ARG LYS PRO PRO ALA LEU PRO ARG PRO ILE ARG ASN SEQRES 3 A 512 LEU GLU VAL LYS PHE THR LYS ILE PHE ILE ASN ASN GLU SEQRES 4 A 512 TRP HIS GLU SER LYS SER GLY LYS LYS PHE ALA THR CYS SEQRES 5 A 512 ASN PRO SER THR ARG GLU GLN ILE CYS GLU VAL GLU GLU SEQRES 6 A 512 GLY ASP LYS PRO ASP VAL ASP LYS ALA VAL GLU ALA ALA SEQRES 7 A 512 GLN VAL ALA PHE GLN ARG GLY SER PRO TRP ARG ARG LEU SEQRES 8 A 512 ASP ALA LEU SER ARG GLY ARG LEU LEU HIS GLN LEU ALA SEQRES 9 A 512 ASP LEU VAL GLU ARG ASP ARG ALA THR LEU ALA ALA LEU SEQRES 10 A 512 GLU THR MET ASP THR GLY LYS PRO PHE LEU HIS ALA PHE SEQRES 11 A 512 PHE ILE ASP LEU GLU GLY CYS ILE ARG THR LEU ARG TYR SEQRES 12 A 512 PHE ALA GLY TRP ALA ASP LYS ILE GLN GLY LYS THR ILE SEQRES 13 A 512 PRO THR ASP ASP ASN VAL VAL CYS PHE THR ARG HIS GLU SEQRES 14 A 512 PRO ILE GLY VAL CYS GLY ALA ILE THR PRO TRP ASN PHE SEQRES 15 A 512 PRO LEU LEU MET LEU VAL TRP LYS LEU ALA PRO ALA LEU SEQRES 16 A 512 CYS CYS GLY ASN THR MET VAL LEU LYS PRO ALA GLU GLN SEQRES 17 A 512 THR PRO LEU THR ALA LEU TYR LEU GLY SER LEU ILE LYS SEQRES 18 A 512 GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE VAL PRO SEQRES 19 A 512 GLY PHE GLY PRO THR VAL GLY ALA ALA ILE SER SER HIS SEQRES 20 A 512 PRO GLN ILE ASN LYS ILE ALA PHE THR GLY SER THR GLU SEQRES 21 A 512 VAL GLY LYS LEU VAL LYS GLU ALA ALA SER ARG SER ASN SEQRES 22 A 512 LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS ASN PRO SEQRES 23 A 512 CYS ILE VAL CYS ALA ASP ALA ASP LEU ASP LEU ALA VAL SEQRES 24 A 512 GLU CYS ALA HIS GLN GLY VAL PHE PHE ASN GLN GLY GLN SEQRES 25 A 512 CYS CYS THR ALA ALA SER ARG VAL PHE VAL GLU GLU GLN SEQRES 26 A 512 VAL TYR SER GLU PHE VAL ARG ARG SER VAL GLU TYR ALA SEQRES 27 A 512 LYS LYS ARG PRO VAL GLY ASP PRO PHE ASP VAL LYS THR SEQRES 28 A 512 GLU GLN GLY PRO GLN ILE ASP GLN LYS GLN PHE ASP LYS SEQRES 29 A 512 ILE LEU GLU LEU ILE GLU SER GLY LYS LYS GLU GLY ALA SEQRES 30 A 512 LYS LEU GLU CYS GLY GLY SER ALA MET GLU ASP LYS GLY SEQRES 31 A 512 LEU PHE ILE LYS PRO THR VAL PHE SER GLU VAL THR ASP SEQRES 32 A 512 ASN MET ARG ILE ALA LYS GLU GLU ILE PHE GLY PRO VAL SEQRES 33 A 512 GLN PRO ILE LEU LYS PHE LYS SER ILE GLU GLU VAL ILE SEQRES 34 A 512 LYS ARG ALA ASN SER THR ASP TYR GLY LEU THR ALA ALA SEQRES 35 A 512 VAL PHE THR LYS ASN LEU ASP LYS ALA LEU LYS LEU ALA SEQRES 36 A 512 SER ALA LEU GLU SER GLY THR VAL TRP ILE ASN CYS TYR SEQRES 37 A 512 ASN ALA LEU TYR ALA GLN ALA PRO PHE GLY GLY PHE LYS SEQRES 38 A 512 MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR ALA LEU SEQRES 39 A 512 ALA GLU TYR THR GLU VAL LYS THR VAL THR ILE LYS LEU SEQRES 40 A 512 GLY ASP LYS ASN PRO SEQRES 1 B 512 MET ALA THR ALA ASN GLY ALA VAL GLU ASN GLY GLN PRO SEQRES 2 B 512 ASP ARG LYS PRO PRO ALA LEU PRO ARG PRO ILE ARG ASN SEQRES 3 B 512 LEU GLU VAL LYS PHE THR LYS ILE PHE ILE ASN ASN GLU SEQRES 4 B 512 TRP HIS GLU SER LYS SER GLY LYS LYS PHE ALA THR CYS SEQRES 5 B 512 ASN PRO SER THR ARG GLU GLN ILE CYS GLU VAL GLU GLU SEQRES 6 B 512 GLY ASP LYS PRO ASP VAL ASP LYS ALA VAL GLU ALA ALA SEQRES 7 B 512 GLN VAL ALA PHE GLN ARG GLY SER PRO TRP ARG ARG LEU SEQRES 8 B 512 ASP ALA LEU SER ARG GLY ARG LEU LEU HIS GLN LEU ALA SEQRES 9 B 512 ASP LEU VAL GLU ARG ASP ARG ALA THR LEU ALA ALA LEU SEQRES 10 B 512 GLU THR MET ASP THR GLY LYS PRO PHE LEU HIS ALA PHE SEQRES 11 B 512 PHE ILE ASP LEU GLU GLY CYS ILE ARG THR LEU ARG TYR SEQRES 12 B 512 PHE ALA GLY TRP ALA ASP LYS ILE GLN GLY LYS THR ILE SEQRES 13 B 512 PRO THR ASP ASP ASN VAL VAL CYS PHE THR ARG HIS GLU SEQRES 14 B 512 PRO ILE GLY VAL CYS GLY ALA ILE THR PRO TRP ASN PHE SEQRES 15 B 512 PRO LEU LEU MET LEU VAL TRP LYS LEU ALA PRO ALA LEU SEQRES 16 B 512 CYS CYS GLY ASN THR MET VAL LEU LYS PRO ALA GLU GLN SEQRES 17 B 512 THR PRO LEU THR ALA LEU TYR LEU GLY SER LEU ILE LYS SEQRES 18 B 512 GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE VAL PRO SEQRES 19 B 512 GLY PHE GLY PRO THR VAL GLY ALA ALA ILE SER SER HIS SEQRES 20 B 512 PRO GLN ILE ASN LYS ILE ALA PHE THR GLY SER THR GLU SEQRES 21 B 512 VAL GLY LYS LEU VAL LYS GLU ALA ALA SER ARG SER ASN SEQRES 22 B 512 LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS ASN PRO SEQRES 23 B 512 CYS ILE VAL CYS ALA ASP ALA ASP LEU ASP LEU ALA VAL SEQRES 24 B 512 GLU CYS ALA HIS GLN GLY VAL PHE PHE ASN GLN GLY GLN SEQRES 25 B 512 CYS CYS THR ALA ALA SER ARG VAL PHE VAL GLU GLU GLN SEQRES 26 B 512 VAL TYR SER GLU PHE VAL ARG ARG SER VAL GLU TYR ALA SEQRES 27 B 512 LYS LYS ARG PRO VAL GLY ASP PRO PHE ASP VAL LYS THR SEQRES 28 B 512 GLU GLN GLY PRO GLN ILE ASP GLN LYS GLN PHE ASP LYS SEQRES 29 B 512 ILE LEU GLU LEU ILE GLU SER GLY LYS LYS GLU GLY ALA SEQRES 30 B 512 LYS LEU GLU CYS GLY GLY SER ALA MET GLU ASP LYS GLY SEQRES 31 B 512 LEU PHE ILE LYS PRO THR VAL PHE SER GLU VAL THR ASP SEQRES 32 B 512 ASN MET ARG ILE ALA LYS GLU GLU ILE PHE GLY PRO VAL SEQRES 33 B 512 GLN PRO ILE LEU LYS PHE LYS SER ILE GLU GLU VAL ILE SEQRES 34 B 512 LYS ARG ALA ASN SER THR ASP TYR GLY LEU THR ALA ALA SEQRES 35 B 512 VAL PHE THR LYS ASN LEU ASP LYS ALA LEU LYS LEU ALA SEQRES 36 B 512 SER ALA LEU GLU SER GLY THR VAL TRP ILE ASN CYS TYR SEQRES 37 B 512 ASN ALA LEU TYR ALA GLN ALA PRO PHE GLY GLY PHE LYS SEQRES 38 B 512 MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR ALA LEU SEQRES 39 B 512 ALA GLU TYR THR GLU VAL LYS THR VAL THR ILE LYS LEU SEQRES 40 B 512 GLY ASP LYS ASN PRO HET NAD A 601 44 HET R2Q A 602 36 HET NA A 603 1 HET GOL A 604 14 HET GOL A 605 14 HET GOL A 606 14 HET NA A 607 1 HET GOL A 608 14 HET GOL A 609 14 HET NAD B 601 44 HET R2Q B 602 36 HET GOL B 603 14 HET R2K B 604 11 HET GOL B 605 14 HET NA B 606 1 HET NA B 607 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM R2Q 3-(2-PHENYLIMIDAZO[1,2-A]PYRIDIN-6-YL) HETNAM 2 R2Q BENZENECARBONITRILE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM R2K (3-OXIDANYLIDENE-3-SODIOOXY-PROPANOYL)OXYSODIUM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 R2Q 2(C20 H13 N3) FORMUL 5 NA 4(NA 1+) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 15 R2K C3 H2 NA2 O4 FORMUL 19 HOH *38(H2 O) HELIX 1 AA1 ASP A 67 GLN A 83 1 17 HELIX 2 AA2 SER A 86 LEU A 91 1 6 HELIX 3 AA3 ASP A 92 ASP A 110 1 19 HELIX 4 AA4 ASP A 110 GLY A 123 1 14 HELIX 5 AA5 PRO A 125 ILE A 132 1 8 HELIX 6 AA6 ILE A 132 ALA A 148 1 17 HELIX 7 AA7 ASP A 149 ILE A 151 5 3 HELIX 8 AA8 PHE A 182 CYS A 197 1 16 HELIX 9 AA9 PRO A 210 GLY A 224 1 15 HELIX 10 AB1 THR A 239 SER A 246 1 8 HELIX 11 AB2 SER A 258 ASN A 273 1 16 HELIX 12 AB3 ASP A 294 PHE A 308 1 15 HELIX 13 AB4 ASN A 309 GLN A 312 5 4 HELIX 14 AB5 VAL A 326 LYS A 340 1 15 HELIX 15 AB6 ASP A 358 LYS A 374 1 17 HELIX 16 AB7 MET A 405 LYS A 409 5 5 HELIX 17 AB8 SER A 424 SER A 434 1 11 HELIX 18 AB9 ASN A 447 LEU A 458 1 12 HELIX 19 AC1 PHE A 480 GLY A 484 5 5 HELIX 20 AC2 GLU A 491 GLU A 496 1 6 HELIX 21 AC3 ASP B 67 GLN B 83 1 17 HELIX 22 AC4 SER B 86 LEU B 91 1 6 HELIX 23 AC5 ASP B 92 ASP B 110 1 19 HELIX 24 AC6 ASP B 110 GLY B 123 1 14 HELIX 25 AC7 PRO B 125 ILE B 132 1 8 HELIX 26 AC8 ILE B 132 ALA B 148 1 17 HELIX 27 AC9 ASP B 149 ILE B 151 5 3 HELIX 28 AD1 PHE B 182 CYS B 197 1 16 HELIX 29 AD2 PRO B 210 GLY B 224 1 15 HELIX 30 AD3 THR B 239 SER B 246 1 8 HELIX 31 AD4 SER B 258 ASN B 273 1 16 HELIX 32 AD5 ASP B 294 PHE B 308 1 15 HELIX 33 AD6 ASN B 309 GLN B 312 5 4 HELIX 34 AD7 GLU B 324 LYS B 340 1 17 HELIX 35 AD8 ASP B 358 GLU B 375 1 18 HELIX 36 AD9 MET B 405 LYS B 409 5 5 HELIX 37 AE1 SER B 424 SER B 434 1 11 HELIX 38 AE2 ASN B 447 LEU B 458 1 12 HELIX 39 AE3 PHE B 480 GLY B 484 5 5 HELIX 40 AE4 GLU B 491 GLU B 496 1 6 SHEET 1 AA1 2 ILE A 34 ILE A 36 0 SHEET 2 AA1 2 GLU A 39 HIS A 41 -1 O HIS A 41 N ILE A 34 SHEET 1 AA2 2 LYS A 48 CYS A 52 0 SHEET 2 AA2 2 GLN A 59 GLU A 64 -1 O VAL A 63 N PHE A 49 SHEET 1 AA3 8 THR A 155 ILE A 156 0 SHEET 2 AA3 8 VAL A 162 PRO A 170 -1 O CYS A 164 N ILE A 156 SHEET 3 AA3 8 THR A 498 LYS A 506 -1 O VAL A 503 N PHE A 165 SHEET 4 AA3 8 THR B 462 ILE B 465 1 O VAL B 463 N THR A 502 SHEET 5 AA3 8 THR B 440 PHE B 444 1 N ALA B 441 O TRP B 464 SHEET 6 AA3 8 ASN B 285 VAL B 289 1 N ILE B 288 O ALA B 442 SHEET 7 AA3 8 ALA B 317 GLU B 323 1 O PHE B 321 N VAL B 289 SHEET 8 AA3 8 ILE B 419 PHE B 422 1 O LEU B 420 N VAL B 320 SHEET 1 AA4 5 VAL A 230 ILE A 232 0 SHEET 2 AA4 5 THR A 200 LYS A 204 1 N LEU A 203 O ASN A 231 SHEET 3 AA4 5 VAL A 173 ILE A 177 1 N CYS A 174 O THR A 200 SHEET 4 AA4 5 LYS A 252 THR A 256 1 O LYS A 252 N GLY A 175 SHEET 5 AA4 5 ARG A 276 GLU A 280 1 O THR A 278 N PHE A 255 SHEET 1 AA5 8 ILE A 419 PHE A 422 0 SHEET 2 AA5 8 ALA A 317 GLU A 323 1 N VAL A 322 O LEU A 420 SHEET 3 AA5 8 ASN A 285 VAL A 289 1 N VAL A 289 O PHE A 321 SHEET 4 AA5 8 THR A 440 PHE A 444 1 O ALA A 442 N ILE A 288 SHEET 5 AA5 8 THR A 462 ILE A 465 1 O TRP A 464 N ALA A 441 SHEET 6 AA5 8 THR B 498 LYS B 506 1 O THR B 502 N VAL A 463 SHEET 7 AA5 8 VAL B 162 PRO B 170 -1 N PHE B 165 O VAL B 503 SHEET 8 AA5 8 THR B 155 ILE B 156 -1 N ILE B 156 O CYS B 164 SHEET 1 AA6 3 LYS A 378 CYS A 381 0 SHEET 2 AA6 3 THR A 396 SER A 399 -1 O SER A 399 N LYS A 378 SHEET 3 AA6 3 VAL A 416 GLN A 417 1 O GLN A 417 N PHE A 398 SHEET 1 AA7 2 ILE B 34 ILE B 36 0 SHEET 2 AA7 2 GLU B 39 HIS B 41 -1 O GLU B 39 N ILE B 36 SHEET 1 AA8 2 LYS B 48 CYS B 52 0 SHEET 2 AA8 2 GLN B 59 GLU B 64 -1 O VAL B 63 N PHE B 49 SHEET 1 AA9 5 VAL B 230 ILE B 232 0 SHEET 2 AA9 5 THR B 200 LYS B 204 1 N LEU B 203 O ASN B 231 SHEET 3 AA9 5 VAL B 173 ILE B 177 1 N CYS B 174 O THR B 200 SHEET 4 AA9 5 LYS B 252 THR B 256 1 O LYS B 252 N GLY B 175 SHEET 5 AA9 5 ARG B 276 GLU B 280 1 O THR B 278 N PHE B 255 SHEET 1 AB1 3 LYS B 378 CYS B 381 0 SHEET 2 AB1 3 THR B 396 SER B 399 -1 O SER B 399 N LYS B 378 SHEET 3 AB1 3 VAL B 416 GLN B 417 1 O GLN B 417 N THR B 396 LINK CA ASP A 388 O7N NAD B 601 1555 3544 1.38 LINK O CYS A 52 NA NA A 603 1555 1555 2.89 LINK O GLN A 208 NA NA A 603 1555 1555 2.57 LINK O ASP B 121 NA1 R2K B 604 1555 1555 3.10 CRYST1 83.162 89.509 158.646 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006303 0.00000