HEADER HYDROLASE 28-AUG-20 7A7G TITLE SOLUBLE EPOXIDE HYDROLASE IN COMPLEX WITH TK90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL EPOXIDE HYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.3.2.10,3.1.3.76; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COMPLEX, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.NI,J.S.KRAMER,T.KIRCHNER,E.PROSCHAK,A.CHAIKUAD,S.KNAPP,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 2 31-JAN-24 7A7G 1 REMARK REVDAT 1 04-AUG-21 7A7G 0 JRNL AUTH M.HARTMANN,S.I.BIBLI,D.TEWS,X.NI,T.KIRCHER,J.S.KRAMER, JRNL AUTH 2 W.KILU,J.HEERING,V.HERNANDEZ-OLMOS,L.WEIZEL,G.K.E.SCRIBA, JRNL AUTH 3 S.KRAIT,S.KNAPP,A.CHAIKUAD,D.MERK,I.FLEMING, JRNL AUTH 4 P.FISCHER-POSOVSZKY,E.PROSCHAK JRNL TITL COMBINED CARDIOPROTECTIVE AND ADIPOCYTE BROWNING EFFECTS JRNL TITL 2 PROMOTED BY THE EUTOMER OF DUAL SEH/PPAR GAMMA MODULATOR. JRNL REF J.MED.CHEM. V. 64 2815 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33620196 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02063 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.0 REMARK 3 NUMBER OF REFLECTIONS : 23195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1652 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.68000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.676 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.296 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.151 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5166 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4571 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7034 ; 1.108 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10567 ; 1.117 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 637 ; 9.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;31.669 ;21.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;16.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.505 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5979 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1151 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 229 547 B 229 547 10273 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3580 4.0087 22.9487 REMARK 3 T TENSOR REMARK 3 T11: 0.3454 T22: 0.0092 REMARK 3 T33: 0.1020 T12: -0.0260 REMARK 3 T13: 0.0487 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.8156 L22: 1.9702 REMARK 3 L33: 1.6529 L12: -0.7568 REMARK 3 L13: -0.5169 L23: 1.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: 0.0093 S13: -0.0984 REMARK 3 S21: 0.1529 S22: -0.0396 S23: 0.0076 REMARK 3 S31: 0.0878 S32: -0.1047 S33: 0.1148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 369 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3048 15.3087 27.9497 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.0761 REMARK 3 T33: 0.1016 T12: 0.0334 REMARK 3 T13: 0.0687 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 1.6658 L22: 2.4337 REMARK 3 L33: 1.4041 L12: -0.1688 REMARK 3 L13: -1.0890 L23: 0.4156 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.0054 S13: 0.1012 REMARK 3 S21: 0.2464 S22: -0.0722 S23: 0.1639 REMARK 3 S31: -0.2374 S32: -0.2185 S33: 0.1024 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 229 B 368 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7236 -4.5046 3.2493 REMARK 3 T TENSOR REMARK 3 T11: 0.3051 T22: 0.0085 REMARK 3 T33: 0.1388 T12: 0.0007 REMARK 3 T13: 0.0475 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.7274 L22: 1.5815 REMARK 3 L33: 2.0223 L12: -0.5372 REMARK 3 L13: -0.7629 L23: 1.3524 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: 0.0628 S13: 0.0925 REMARK 3 S21: -0.0404 S22: -0.0132 S23: -0.1614 REMARK 3 S31: -0.1895 S32: 0.0451 S33: -0.0810 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 369 B 547 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0981 -15.8017 -5.3969 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.0299 REMARK 3 T33: 0.1326 T12: 0.0332 REMARK 3 T13: 0.0991 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.0253 L22: 1.9355 REMARK 3 L33: 2.6935 L12: -0.0678 REMARK 3 L13: -1.2311 L23: 0.1652 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.2011 S13: -0.2501 REMARK 3 S21: -0.1314 S22: -0.0551 S23: -0.2117 REMARK 3 S31: 0.1704 S32: -0.0014 S33: 0.0149 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7A7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. REMARK 100 THE DEPOSITION ID IS D_1292110991. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.13 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24408 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG6000, 70 MM AMMONIUMACETAT, 200 REMARK 280 MM MAGNESIUM ACETAT TETRAHYDRATE, PH 6.13, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.90400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.62450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.90400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.62450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 219 REMARK 465 ALA A 220 REMARK 465 SER A 221 REMARK 465 LEU A 222 REMARK 465 ASN A 223 REMARK 465 THR A 224 REMARK 465 PRO A 225 REMARK 465 ALA A 226 REMARK 465 PRO A 227 REMARK 465 LEU A 228 REMARK 465 LYS A 376 REMARK 465 ALA A 377 REMARK 465 ASN A 548 REMARK 465 PRO A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 LYS A 554 REMARK 465 MET A 555 REMARK 465 LEU A 556 REMARK 465 LEU A 557 REMARK 465 GLU A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 MET B 219 REMARK 465 ALA B 220 REMARK 465 SER B 221 REMARK 465 LEU B 222 REMARK 465 ASN B 223 REMARK 465 THR B 224 REMARK 465 PRO B 225 REMARK 465 ALA B 226 REMARK 465 PRO B 227 REMARK 465 LEU B 228 REMARK 465 ASN B 378 REMARK 465 ASN B 548 REMARK 465 PRO B 549 REMARK 465 PRO B 550 REMARK 465 VAL B 551 REMARK 465 VAL B 552 REMARK 465 SER B 553 REMARK 465 LYS B 554 REMARK 465 MET B 555 REMARK 465 LEU B 556 REMARK 465 LEU B 557 REMARK 465 GLU B 558 REMARK 465 HIS B 559 REMARK 465 HIS B 560 REMARK 465 HIS B 561 REMARK 465 HIS B 562 REMARK 465 HIS B 563 REMARK 465 HIS B 564 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 ASN A 366 CG OD1 ND2 REMARK 470 ASN A 368 CG OD1 ND2 REMARK 470 MET A 369 CG SD CE REMARK 470 LEU A 372 CG CD1 CD2 REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 SER A 374 OG REMARK 470 ILE A 375 CG1 CG2 CD1 REMARK 470 ASN A 378 CG OD1 ND2 REMARK 470 VAL A 380 CG1 CG2 REMARK 470 HIS A 420 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 CYS A 423 SG REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 ASN A 431 CG OD1 ND2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 GLU A 435 CG CD OE1 OE2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 LEU A 480 CG CD1 CD2 REMARK 470 GLN A 502 CG CD OE1 NE2 REMARK 470 TRP A 510 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 510 CZ3 CH2 REMARK 470 ARG A 547 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 283 CG CD OE1 NE2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 ASN B 366 CG OD1 ND2 REMARK 470 ASN B 368 CG OD1 ND2 REMARK 470 MET B 369 CG SD CE REMARK 470 LEU B 372 CG CD1 CD2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 SER B 374 OG REMARK 470 ILE B 375 CG1 CG2 CD1 REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 ASP B 382 CG OD1 OD2 REMARK 470 GLU B 389 CG CD OE1 OE2 REMARK 470 GLN B 399 CG CD OE1 NE2 REMARK 470 LYS B 421 CG CD CE NZ REMARK 470 CYS B 423 SG REMARK 470 GLU B 424 CG CD OE1 OE2 REMARK 470 GLU B 434 CG CD OE1 OE2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 LYS B 474 CG CD CE NZ REMARK 470 LYS B 478 CG CD CE NZ REMARK 470 LEU B 480 CG CD1 CD2 REMARK 470 LEU B 485 CG CD1 CD2 REMARK 470 GLN B 502 CG CD OE1 NE2 REMARK 470 TRP B 510 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 510 CZ3 CH2 REMARK 470 LYS B 515 CG CD CE NZ REMARK 470 LYS B 540 CG CD CE NZ REMARK 470 ARG B 547 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 -168.22 -102.12 REMARK 500 LYS A 245 158.96 176.48 REMARK 500 GLU A 269 -137.14 -115.33 REMARK 500 ASP A 335 -125.46 69.39 REMARK 500 ASN A 359 -47.01 78.42 REMARK 500 PRO A 379 -6.99 -55.39 REMARK 500 GLU A 435 71.21 -113.37 REMARK 500 VAL A 498 -60.86 -104.62 REMARK 500 LYS A 530 58.58 -141.60 REMARK 500 ALA A 546 -37.06 -132.61 REMARK 500 SER B 231 -166.14 -101.03 REMARK 500 LYS B 245 163.85 179.77 REMARK 500 GLU B 269 -138.05 -116.02 REMARK 500 ASP B 335 -126.30 68.83 REMARK 500 ASN B 359 -46.56 76.64 REMARK 500 ILE B 375 -70.10 -71.31 REMARK 500 LYS B 376 38.08 -86.20 REMARK 500 GLU B 435 75.32 -113.04 REMARK 500 LEU B 480 130.55 -38.42 REMARK 500 VAL B 498 -61.23 -105.41 REMARK 500 HIS B 513 33.99 -96.38 REMARK 500 LYS B 530 58.00 -142.58 REMARK 500 ALA B 546 -35.26 -131.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 291 ASP A 292 136.03 REMARK 500 MET B 291 ASP B 292 135.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TK9 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TK9 B 601 DBREF 7A7G A 222 555 UNP P34913 HYES_HUMAN 222 555 DBREF 7A7G B 222 555 UNP P34913 HYES_HUMAN 222 555 SEQADV 7A7G MET A 219 UNP P34913 INITIATING METHIONINE SEQADV 7A7G ALA A 220 UNP P34913 EXPRESSION TAG SEQADV 7A7G SER A 221 UNP P34913 EXPRESSION TAG SEQADV 7A7G LEU A 556 UNP P34913 EXPRESSION TAG SEQADV 7A7G LEU A 557 UNP P34913 EXPRESSION TAG SEQADV 7A7G GLU A 558 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 559 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 560 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 561 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 562 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 563 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS A 564 UNP P34913 EXPRESSION TAG SEQADV 7A7G MET B 219 UNP P34913 INITIATING METHIONINE SEQADV 7A7G ALA B 220 UNP P34913 EXPRESSION TAG SEQADV 7A7G SER B 221 UNP P34913 EXPRESSION TAG SEQADV 7A7G LEU B 556 UNP P34913 EXPRESSION TAG SEQADV 7A7G LEU B 557 UNP P34913 EXPRESSION TAG SEQADV 7A7G GLU B 558 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 559 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 560 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 561 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 562 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 563 UNP P34913 EXPRESSION TAG SEQADV 7A7G HIS B 564 UNP P34913 EXPRESSION TAG SEQRES 1 A 346 MET ALA SER LEU ASN THR PRO ALA PRO LEU PRO THR SER SEQRES 2 A 346 CYS ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL SEQRES 3 A 346 LYS PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER SEQRES 4 A 346 GLY PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER SEQRES 5 A 346 TRP TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN SEQRES 6 A 346 ALA GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR SEQRES 7 A 346 GLY GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS SEQRES 8 A 346 MET GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP SEQRES 9 A 346 LYS LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP SEQRES 10 A 346 TRP GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR SEQRES 11 A 346 PRO GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO SEQRES 12 A 346 PHE ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER SEQRES 13 A 346 ILE LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE SEQRES 14 A 346 GLN GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN SEQRES 15 A 346 LEU SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP SEQRES 16 A 346 GLU SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY SEQRES 17 A 346 GLY LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER SEQRES 18 A 346 ARG MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN SEQRES 19 A 346 GLN PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP SEQRES 20 A 346 TYR ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SEQRES 21 A 346 SER LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL SEQRES 22 A 346 THR ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER SEQRES 23 A 346 GLN HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY SEQRES 24 A 346 HIS ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS SEQRES 25 A 346 PRO THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SEQRES 26 A 346 SER ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET LEU SEQRES 27 A 346 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 346 MET ALA SER LEU ASN THR PRO ALA PRO LEU PRO THR SER SEQRES 2 B 346 CYS ASN PRO SER ASP MET SER HIS GLY TYR VAL THR VAL SEQRES 3 B 346 LYS PRO ARG VAL ARG LEU HIS PHE VAL GLU LEU GLY SER SEQRES 4 B 346 GLY PRO ALA VAL CYS LEU CYS HIS GLY PHE PRO GLU SER SEQRES 5 B 346 TRP TYR SER TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN SEQRES 6 B 346 ALA GLY TYR ARG VAL LEU ALA MET ASP MET LYS GLY TYR SEQRES 7 B 346 GLY GLU SER SER ALA PRO PRO GLU ILE GLU GLU TYR CYS SEQRES 8 B 346 MET GLU VAL LEU CYS LYS GLU MET VAL THR PHE LEU ASP SEQRES 9 B 346 LYS LEU GLY LEU SER GLN ALA VAL PHE ILE GLY HIS ASP SEQRES 10 B 346 TRP GLY GLY MET LEU VAL TRP TYR MET ALA LEU PHE TYR SEQRES 11 B 346 PRO GLU ARG VAL ARG ALA VAL ALA SER LEU ASN THR PRO SEQRES 12 B 346 PHE ILE PRO ALA ASN PRO ASN MET SER PRO LEU GLU SER SEQRES 13 B 346 ILE LYS ALA ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE SEQRES 14 B 346 GLN GLU PRO GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN SEQRES 15 B 346 LEU SER ARG THR PHE LYS SER LEU PHE ARG ALA SER ASP SEQRES 16 B 346 GLU SER VAL LEU SER MET HIS LYS VAL CYS GLU ALA GLY SEQRES 17 B 346 GLY LEU PHE VAL ASN SER PRO GLU GLU PRO SER LEU SER SEQRES 18 B 346 ARG MET VAL THR GLU GLU GLU ILE GLN PHE TYR VAL GLN SEQRES 19 B 346 GLN PHE LYS LYS SER GLY PHE ARG GLY PRO LEU ASN TRP SEQRES 20 B 346 TYR ARG ASN MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SEQRES 21 B 346 SER LEU GLY ARG LYS ILE LEU ILE PRO ALA LEU MET VAL SEQRES 22 B 346 THR ALA GLU LYS ASP PHE VAL LEU VAL PRO GLN MET SER SEQRES 23 B 346 GLN HIS MET GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY SEQRES 24 B 346 HIS ILE GLU ASP CYS GLY HIS TRP THR GLN MET ASP LYS SEQRES 25 B 346 PRO THR GLU VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SEQRES 26 B 346 SER ASP ALA ARG ASN PRO PRO VAL VAL SER LYS MET LEU SEQRES 27 B 346 LEU GLU HIS HIS HIS HIS HIS HIS HET TK9 A 601 29 HET TK9 B 601 29 HETNAM TK9 (2~{R})-2-[[4-[[4-METHOXY-2-(TRIFLUOROMETHYL) HETNAM 2 TK9 PHENYL]METHYLCARBAMOYL]PHENYL]METHYL]BUTANOIC ACID FORMUL 3 TK9 2(C21 H22 F3 N O4) FORMUL 5 HOH *33(H2 O) HELIX 1 AA1 ASN A 233 MET A 237 5 5 HELIX 2 AA2 SER A 270 ARG A 275 5 6 HELIX 3 AA3 TYR A 276 ALA A 284 1 9 HELIX 4 AA4 GLU A 304 TYR A 308 5 5 HELIX 5 AA5 CYS A 309 LEU A 324 1 16 HELIX 6 AA6 ASP A 335 TYR A 348 1 14 HELIX 7 AA7 SER A 370 ILE A 375 1 6 HELIX 8 AA8 ASN A 378 PHE A 381 5 4 HELIX 9 AA9 ASP A 382 PHE A 387 1 6 HELIX 10 AB1 GLY A 391 ASN A 400 1 10 HELIX 11 AB2 ASN A 400 PHE A 409 1 10 HELIX 12 AB3 ALA A 411 SER A 415 5 5 HELIX 13 AB4 LYS A 421 GLY A 426 1 6 HELIX 14 AB5 THR A 443 LYS A 455 1 13 HELIX 15 AB6 PHE A 459 TRP A 465 1 7 HELIX 16 AB7 ASN A 468 LYS A 478 1 11 HELIX 17 AB8 VAL A 500 GLN A 505 5 6 HELIX 18 AB9 TRP A 525 LYS A 530 1 6 HELIX 19 AC1 LYS A 530 ALA A 546 1 17 HELIX 20 AC2 ASN B 233 MET B 237 5 5 HELIX 21 AC3 SER B 270 ARG B 275 5 6 HELIX 22 AC4 GLN B 277 ALA B 284 1 8 HELIX 23 AC5 GLU B 304 TYR B 308 5 5 HELIX 24 AC6 CYS B 309 LEU B 324 1 16 HELIX 25 AC7 ASP B 335 TYR B 348 1 14 HELIX 26 AC8 SER B 370 LYS B 376 1 7 HELIX 27 AC9 PRO B 379 PHE B 381 5 3 HELIX 28 AD1 ASP B 382 PHE B 387 1 6 HELIX 29 AD2 GLY B 391 ASN B 400 1 10 HELIX 30 AD3 ASN B 400 PHE B 409 1 10 HELIX 31 AD4 ALA B 411 SER B 415 5 5 HELIX 32 AD5 LYS B 421 GLY B 426 1 6 HELIX 33 AD6 THR B 443 LYS B 455 1 13 HELIX 34 AD7 PHE B 459 TRP B 465 1 7 HELIX 35 AD8 ASN B 468 LYS B 478 1 11 HELIX 36 AD9 VAL B 500 GLN B 505 5 6 HELIX 37 AE1 HIS B 506 ILE B 511 1 6 HELIX 38 AE2 TRP B 525 LYS B 530 1 6 HELIX 39 AE3 LYS B 530 ALA B 546 1 17 SHEET 1 AA116 LEU A 514 ILE A 519 0 SHEET 2 AA116 ALA A 488 ALA A 493 1 N ALA A 488 O LYS A 515 SHEET 3 AA116 VAL A 352 LEU A 358 1 N SER A 357 O VAL A 491 SHEET 4 AA116 ALA A 329 HIS A 334 1 N GLY A 333 O LEU A 358 SHEET 5 AA116 ALA A 260 CYS A 264 1 N CYS A 262 O VAL A 330 SHEET 6 AA116 ARG A 287 ASP A 292 1 O ARG A 287 N VAL A 261 SHEET 7 AA116 VAL A 248 LEU A 255 -1 N LEU A 255 O VAL A 288 SHEET 8 AA116 SER A 238 LYS A 245 -1 N VAL A 242 O LEU A 250 SHEET 9 AA116 SER B 238 LYS B 245 -1 O HIS B 239 N TYR A 241 SHEET 10 AA116 VAL B 248 LEU B 255 -1 O LEU B 250 N VAL B 242 SHEET 11 AA116 ARG B 287 ASP B 292 -1 O VAL B 288 N LEU B 255 SHEET 12 AA116 ALA B 260 CYS B 264 1 N VAL B 261 O LEU B 289 SHEET 13 AA116 ALA B 329 HIS B 334 1 O VAL B 330 N CYS B 262 SHEET 14 AA116 VAL B 352 LEU B 358 1 O LEU B 358 N GLY B 333 SHEET 15 AA116 ALA B 488 ALA B 493 1 O VAL B 491 N SER B 357 SHEET 16 AA116 LEU B 514 ILE B 519 1 O LYS B 515 N ALA B 488 CISPEP 1 PHE A 267 PRO A 268 0 -22.23 CISPEP 2 PHE B 267 PRO B 268 0 -19.42 SITE 1 AC1 12 PHE A 267 PRO A 268 ASP A 335 MET A 339 SITE 2 AC1 12 TYR A 383 GLN A 384 LEU A 408 MET A 419 SITE 3 AC1 12 TYR A 466 VAL A 498 MET A 503 HIS A 524 SITE 1 AC2 13 PHE B 267 PRO B 268 ASP B 335 TRP B 336 SITE 2 AC2 13 MET B 339 TYR B 383 GLN B 384 LEU B 408 SITE 3 AC2 13 MET B 419 TYR B 466 VAL B 498 MET B 503 SITE 4 AC2 13 HIS B 524 CRYST1 137.808 79.249 90.443 90.00 130.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007256 0.000000 0.006225 0.00000 SCALE2 0.000000 0.012618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014567 0.00000