HEADER RECOMBINATION 30-AUG-20 7A8R TITLE STRUCTURE OF RECQL FROM BOS TAURUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.6.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: RECQL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS HELICASE, DNA REPAIR, HOLLIDAY JUNCTION, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR S.RETY,W.F.CHEN,X.G.XI REVDAT 2 31-JAN-24 7A8R 1 REMARK REVDAT 1 06-OCT-21 7A8R 0 JRNL AUTH N.N.LIU,Z.Y.SONG,H.L.GUO,H.YIN,W.F.CHEN,Y.X.DAI,B.G.XIN, JRNL AUTH 2 X.AI,L.JI,Q.M.WANG,X.M.HOU,S.X.DOU,S.RETY,X.G.XI JRNL TITL ENDOGENOUS BOS TAURUS RECQL IS PREDOMINANTLY MONOMERIC AND JRNL TITL 2 MORE ACTIVE THAN OLIGOMERS. JRNL REF CELL REP V. 36 09688 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34496242 JRNL DOI 10.1016/J.CELREP.2021.109688 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.2 REMARK 3 NUMBER OF REFLECTIONS : 44679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.1600 - 5.7900 0.99 3754 207 0.1698 0.1840 REMARK 3 2 5.7900 - 4.6100 1.00 3577 204 0.1650 0.2193 REMARK 3 3 4.6100 - 4.0300 1.00 3585 179 0.1527 0.2156 REMARK 3 4 4.0300 - 3.6600 1.00 3517 205 0.1840 0.2574 REMARK 3 5 3.6600 - 3.4000 1.00 3555 181 0.2023 0.2858 REMARK 3 6 3.4000 - 3.2000 1.00 3543 183 0.2289 0.2971 REMARK 3 7 3.2000 - 3.0400 1.00 3474 225 0.2600 0.2811 REMARK 3 8 3.0400 - 2.9100 1.00 3461 194 0.2617 0.2972 REMARK 3 9 2.9100 - 2.8000 1.00 3485 183 0.2739 0.3543 REMARK 3 10 2.8000 - 2.7000 0.94 3335 166 0.2823 0.3293 REMARK 3 11 2.7000 - 2.6200 0.82 2853 152 0.2909 0.3129 REMARK 3 12 2.6200 - 2.5400 0.58 2021 112 0.2912 0.3169 REMARK 3 13 2.5400 - 2.4700 0.31 1104 59 0.2927 0.2863 REMARK 3 14 2.4700 - 2.4100 0.17 570 24 0.2883 0.2812 REMARK 3 15 2.4100 - 2.3600 0.09 330 15 0.3055 0.2469 REMARK 3 16 2.3600 - 2.3100 0.06 216 10 0.2856 0.3537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.698 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8700 REMARK 3 ANGLE : 0.810 11740 REMARK 3 CHIRALITY : 0.047 1295 REMARK 3 PLANARITY : 0.004 1479 REMARK 3 DIHEDRAL : 20.797 3298 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4474 38.5581 90.8215 REMARK 3 T TENSOR REMARK 3 T11: 0.5587 T22: 0.3126 REMARK 3 T33: 0.2788 T12: -0.0260 REMARK 3 T13: -0.0238 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.8069 L22: 3.4703 REMARK 3 L33: 5.2273 L12: -0.0545 REMARK 3 L13: -0.3538 L23: 1.4275 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: -0.0967 S13: 0.1006 REMARK 3 S21: 0.2767 S22: -0.0940 S23: 0.0496 REMARK 3 S31: -0.4986 S32: 0.0034 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3052 31.2964 58.4515 REMARK 3 T TENSOR REMARK 3 T11: 0.2103 T22: 0.3541 REMARK 3 T33: 0.3735 T12: -0.0491 REMARK 3 T13: 0.0744 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.7996 L22: 1.9145 REMARK 3 L33: 3.0927 L12: 0.1222 REMARK 3 L13: 0.1364 L23: -0.2871 REMARK 3 S TENSOR REMARK 3 S11: 0.0463 S12: -0.1275 S13: 0.1088 REMARK 3 S21: 0.2393 S22: 0.0107 S23: 0.2192 REMARK 3 S31: 0.0593 S32: -0.3958 S33: -0.0843 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2014 11.2231 41.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.3872 REMARK 3 T33: 0.5241 T12: -0.0626 REMARK 3 T13: 0.0974 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 2.8681 L22: 2.6215 REMARK 3 L33: 0.8774 L12: -2.3046 REMARK 3 L13: 0.5194 L23: -0.6865 REMARK 3 S TENSOR REMARK 3 S11: 0.0496 S12: 0.0577 S13: 0.3131 REMARK 3 S21: -0.1896 S22: -0.0800 S23: -0.4707 REMARK 3 S31: 0.1154 S32: 0.0785 S33: 0.0322 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 592 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1512 17.1670 12.4186 REMARK 3 T TENSOR REMARK 3 T11: 0.7785 T22: 0.3822 REMARK 3 T33: 0.3733 T12: 0.0800 REMARK 3 T13: 0.1257 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 1.5331 L22: 2.9843 REMARK 3 L33: 2.8509 L12: -0.4972 REMARK 3 L13: 0.3478 L23: 0.4194 REMARK 3 S TENSOR REMARK 3 S11: 0.2994 S12: 0.2513 S13: -0.0005 REMARK 3 S21: -0.9778 S22: -0.2702 S23: -0.1372 REMARK 3 S31: 0.2991 S32: -0.0338 S33: -0.0300 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978520 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS BUILT 20190315) REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 23.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20K 11-16% HEPES 100MM, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.78800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.90950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.61200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.90950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.78800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.61200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 463 O HOH A 1101 1.90 REMARK 500 OD1 ASN A 69 O HOH A 1102 1.95 REMARK 500 O HOH A 1124 O HOH A 1139 1.99 REMARK 500 O HOH A 1132 O HOH A 1154 2.01 REMARK 500 O HOH A 1106 O HOH A 1156 2.02 REMARK 500 O HOH A 1140 O HOH A 1149 2.11 REMARK 500 O HOH A 1122 O HOH A 1148 2.14 REMARK 500 OE2 GLU A 298 O HOH A 1103 2.16 REMARK 500 O LEU B 457 O HOH B 1101 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO A 74 NZ LYS A 152 4556 2.01 REMARK 500 NE2 GLN A 244 O TYR B 559 3655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 513 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 95 -3.24 74.77 REMARK 500 PHE A 245 66.99 -116.86 REMARK 500 PRO A 468 -6.81 -58.96 REMARK 500 LEU B 95 -3.11 74.94 REMARK 500 LEU B 513 -0.82 77.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 370 THR A 371 -146.68 REMARK 500 THR A 371 VAL A 372 -108.56 REMARK 500 GLY A 377 ILE A 378 -134.55 REMARK 500 ILE A 378 ASP A 379 -146.56 REMARK 500 HIS B 229 ASP B 230 147.11 REMARK 500 GLU B 481 ILE B 482 -129.02 REMARK 500 GLU B 508 LYS B 509 94.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 453 SG REMARK 620 2 CYS A 471 SG 105.7 REMARK 620 3 CYS A 475 SG 112.1 116.7 REMARK 620 4 CYS A 478 SG 106.9 116.0 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1002 O2B REMARK 620 2 HOH A1112 O 88.6 REMARK 620 3 HOH A1121 O 71.9 84.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 453 SG REMARK 620 2 CYS B 471 SG 108.9 REMARK 620 3 CYS B 475 SG 111.3 119.8 REMARK 620 4 CYS B 478 SG 104.3 113.5 97.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B1002 O2B REMARK 620 2 HOH B1111 O 57.0 REMARK 620 3 HOH B1113 O 58.0 67.7 REMARK 620 N 1 2 DBREF 7A8R A 63 592 UNP A0JN36 A0JN36_BOVIN 63 592 DBREF 7A8R B 63 592 UNP A0JN36 A0JN36_BOVIN 63 592 SEQADV 7A8R MET A 62 UNP A0JN36 INITIATING METHIONINE SEQADV 7A8R MET B 62 UNP A0JN36 INITIATING METHIONINE SEQRES 1 A 531 MET SER SER PRO ALA SER TRP ASN LYS GLU ASP PHE PRO SEQRES 2 A 531 TRP SER GLY LYS VAL LYS ASP VAL LEU GLN ASN VAL PHE SEQRES 3 A 531 LYS LEU GLN LYS PHE ARG PRO LEU GLN LEU GLU THR ILE SEQRES 4 A 531 ASN VAL THR MET SER GLY LYS GLU VAL PHE LEU VAL MET SEQRES 5 A 531 PRO THR GLY GLY GLY LYS SER LEU CYS TYR GLN LEU PRO SEQRES 6 A 531 ALA LEU CYS SER ASP GLY PHE THR LEU VAL ILE CYS PRO SEQRES 7 A 531 LEU ILE SER LEU MET GLU ASP GLN LEU MET VAL LEU LYS SEQRES 8 A 531 GLN LEU GLY ILE SER ALA THR MET LEU ASN ALA SER SER SEQRES 9 A 531 PRO LYS GLU HIS VAL LYS TRP VAL HIS ALA GLU MET VAL SEQRES 10 A 531 ASN LYS ASN SER LYS LEU LYS LEU ILE TYR VAL THR PRO SEQRES 11 A 531 GLU LYS ILE ALA LYS SER LYS MET PHE MET SER ARG LEU SEQRES 12 A 531 GLU LYS ALA TYR GLU ALA ARG ARG PHE THR ARG ILE ALA SEQRES 13 A 531 VAL ASP GLU VAL HIS CYS CYS SER GLN TRP GLY HIS ASP SEQRES 14 A 531 PHE ARG PRO ASP TYR LYS ALA LEU GLY ILE LEU LYS ARG SEQRES 15 A 531 GLN PHE PRO ASN ALA SER LEU ILE GLY LEU THR ALA THR SEQRES 16 A 531 ALA THR SER HIS VAL LEU LYS ASP ALA GLN LYS ILE LEU SEQRES 17 A 531 CYS VAL GLU LYS CYS PHE THR PHE THR ALA SER PHE ASN SEQRES 18 A 531 ARG PRO ASN LEU TYR TYR GLU VAL ARG GLN LYS PRO SER SEQRES 19 A 531 ASN THR GLU ASP PHE ILE GLU ASP ILE VAL LYS LEU ILE SEQRES 20 A 531 ASN GLY ARG TYR LYS GLY GLN SER GLY ILE ILE TYR CYS SEQRES 21 A 531 PHE SER GLN LYS ASP SER GLU GLN VAL THR ILE SER LEU SEQRES 22 A 531 GLN LYS LEU GLY ILE PRO ALA GLY ALA TYR HIS ALA ASN SEQRES 23 A 531 MET GLU PRO GLU ASP LYS THR LYS VAL HIS ARG ARG TRP SEQRES 24 A 531 ALA ALA ASN GLU ILE GLN VAL VAL VAL ALA THR VAL ALA SEQRES 25 A 531 PHE GLY MET GLY ILE ASP LYS PRO ASP VAL ARG PHE VAL SEQRES 26 A 531 ILE HIS HIS SER MET SER LYS SER MET GLU ASN TYR TYR SEQRES 27 A 531 GLN GLU SER GLY ARG ALA GLY ARG ASP ASP MET LYS ALA SEQRES 28 A 531 ASP CYS ILE LEU TYR TYR GLY PHE GLY ASP ILE PHE ARG SEQRES 29 A 531 ILE SER SER MET VAL VAL MET GLU ASN VAL GLY GLN GLN SEQRES 30 A 531 LYS LEU TYR GLU MET VAL SER TYR CYS GLN ASN ILE ASN SEQRES 31 A 531 LYS CYS ARG ARG VAL LEU ILE ALA GLN HIS PHE ASP GLU SEQRES 32 A 531 VAL TRP SER PRO GLU ALA CYS ASN LYS MET CYS ASP ASN SEQRES 33 A 531 CYS CYS LYS GLU ILE SER PHE GLU ARG LYS ASN VAL THR SEQRES 34 A 531 ALA TYR CYS ARG ASP LEU ILE LYS ILE LEU LYS GLN ALA SEQRES 35 A 531 GLU ASP LEU ASN GLU LYS LEU THR PRO LEU LYS LEU ILE SEQRES 36 A 531 ASP SER TRP MET GLY LYS GLY ALA SER LYS LEU ARG VAL SEQRES 37 A 531 ALA GLY LEU ALA PRO PRO THR LEU PRO ARG GLU ASP LEU SEQRES 38 A 531 GLU LYS ILE ILE ALA HIS PHE LEU ILE GLN GLN TYR LEU SEQRES 39 A 531 LYS GLU ASP TYR SER PHE THR ALA TYR ALA THR ILE SER SEQRES 40 A 531 TYR LEU LYS VAL GLY PRO LYS ALA ASN LEU LEU ASN ASN SEQRES 41 A 531 GLU ALA HIS VAL ILE THR MET ARG VAL LYS LYS SEQRES 1 B 531 MET SER SER PRO ALA SER TRP ASN LYS GLU ASP PHE PRO SEQRES 2 B 531 TRP SER GLY LYS VAL LYS ASP VAL LEU GLN ASN VAL PHE SEQRES 3 B 531 LYS LEU GLN LYS PHE ARG PRO LEU GLN LEU GLU THR ILE SEQRES 4 B 531 ASN VAL THR MET SER GLY LYS GLU VAL PHE LEU VAL MET SEQRES 5 B 531 PRO THR GLY GLY GLY LYS SER LEU CYS TYR GLN LEU PRO SEQRES 6 B 531 ALA LEU CYS SER ASP GLY PHE THR LEU VAL ILE CYS PRO SEQRES 7 B 531 LEU ILE SER LEU MET GLU ASP GLN LEU MET VAL LEU LYS SEQRES 8 B 531 GLN LEU GLY ILE SER ALA THR MET LEU ASN ALA SER SER SEQRES 9 B 531 PRO LYS GLU HIS VAL LYS TRP VAL HIS ALA GLU MET VAL SEQRES 10 B 531 ASN LYS ASN SER LYS LEU LYS LEU ILE TYR VAL THR PRO SEQRES 11 B 531 GLU LYS ILE ALA LYS SER LYS MET PHE MET SER ARG LEU SEQRES 12 B 531 GLU LYS ALA TYR GLU ALA ARG ARG PHE THR ARG ILE ALA SEQRES 13 B 531 VAL ASP GLU VAL HIS CYS CYS SER GLN TRP GLY HIS ASP SEQRES 14 B 531 PHE ARG PRO ASP TYR LYS ALA LEU GLY ILE LEU LYS ARG SEQRES 15 B 531 GLN PHE PRO ASN ALA SER LEU ILE GLY LEU THR ALA THR SEQRES 16 B 531 ALA THR SER HIS VAL LEU LYS ASP ALA GLN LYS ILE LEU SEQRES 17 B 531 CYS VAL GLU LYS CYS PHE THR PHE THR ALA SER PHE ASN SEQRES 18 B 531 ARG PRO ASN LEU TYR TYR GLU VAL ARG GLN LYS PRO SER SEQRES 19 B 531 ASN THR GLU ASP PHE ILE GLU ASP ILE VAL LYS LEU ILE SEQRES 20 B 531 ASN GLY ARG TYR LYS GLY GLN SER GLY ILE ILE TYR CYS SEQRES 21 B 531 PHE SER GLN LYS ASP SER GLU GLN VAL THR ILE SER LEU SEQRES 22 B 531 GLN LYS LEU GLY ILE PRO ALA GLY ALA TYR HIS ALA ASN SEQRES 23 B 531 MET GLU PRO GLU ASP LYS THR LYS VAL HIS ARG ARG TRP SEQRES 24 B 531 ALA ALA ASN GLU ILE GLN VAL VAL VAL ALA THR VAL ALA SEQRES 25 B 531 PHE GLY MET GLY ILE ASP LYS PRO ASP VAL ARG PHE VAL SEQRES 26 B 531 ILE HIS HIS SER MET SER LYS SER MET GLU ASN TYR TYR SEQRES 27 B 531 GLN GLU SER GLY ARG ALA GLY ARG ASP ASP MET LYS ALA SEQRES 28 B 531 ASP CYS ILE LEU TYR TYR GLY PHE GLY ASP ILE PHE ARG SEQRES 29 B 531 ILE SER SER MET VAL VAL MET GLU ASN VAL GLY GLN GLN SEQRES 30 B 531 LYS LEU TYR GLU MET VAL SER TYR CYS GLN ASN ILE ASN SEQRES 31 B 531 LYS CYS ARG ARG VAL LEU ILE ALA GLN HIS PHE ASP GLU SEQRES 32 B 531 VAL TRP SER PRO GLU ALA CYS ASN LYS MET CYS ASP ASN SEQRES 33 B 531 CYS CYS LYS GLU ILE SER PHE GLU ARG LYS ASN VAL THR SEQRES 34 B 531 ALA TYR CYS ARG ASP LEU ILE LYS ILE LEU LYS GLN ALA SEQRES 35 B 531 GLU ASP LEU ASN GLU LYS LEU THR PRO LEU LYS LEU ILE SEQRES 36 B 531 ASP SER TRP MET GLY LYS GLY ALA SER LYS LEU ARG VAL SEQRES 37 B 531 ALA GLY LEU ALA PRO PRO THR LEU PRO ARG GLU ASP LEU SEQRES 38 B 531 GLU LYS ILE ILE ALA HIS PHE LEU ILE GLN GLN TYR LEU SEQRES 39 B 531 LYS GLU ASP TYR SER PHE THR ALA TYR ALA THR ILE SER SEQRES 40 B 531 TYR LEU LYS VAL GLY PRO LYS ALA ASN LEU LEU ASN ASN SEQRES 41 B 531 GLU ALA HIS VAL ILE THR MET ARG VAL LYS LYS HET ZN A1001 1 HET ADP A1002 27 HET MG A1003 1 HET ZN B1001 1 HET ADP B1002 27 HET MG B1003 1 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *94(H2 O) HELIX 1 AA1 PRO A 65 ASN A 69 5 5 HELIX 2 AA2 TRP A 75 VAL A 86 1 12 HELIX 3 AA3 LEU A 95 SER A 105 1 11 HELIX 4 AA4 SER A 120 SER A 130 1 11 HELIX 5 AA5 LEU A 140 LEU A 154 1 15 HELIX 6 AA6 PRO A 166 ASN A 179 1 14 HELIX 7 AA7 PRO A 191 LYS A 196 1 6 HELIX 8 AA8 SER A 197 ALA A 210 1 14 HELIX 9 AA9 VAL A 221 SER A 225 5 5 HELIX 10 AB1 ARG A 232 LEU A 238 5 7 HELIX 11 AB2 GLY A 239 PHE A 245 1 7 HELIX 12 AB3 THR A 258 LEU A 269 1 12 HELIX 13 AB4 ASN A 296 TYR A 312 1 17 HELIX 14 AB5 SER A 323 LEU A 337 1 15 HELIX 15 AB6 GLU A 349 ALA A 362 1 14 HELIX 16 AB7 SER A 394 GLY A 403 1 10 HELIX 17 AB8 GLY A 419 VAL A 430 1 12 HELIX 18 AB9 VAL A 435 ASN A 449 1 15 HELIX 19 AC1 CYS A 453 GLN A 460 1 8 HELIX 20 AC2 HIS A 461 TRP A 466 5 6 HELIX 21 AC3 CYS A 475 LYS A 480 1 6 HELIX 22 AC4 VAL A 489 LEU A 506 1 18 HELIX 23 AC5 THR A 511 GLY A 521 1 11 HELIX 24 AC6 ALA A 524 ARG A 528 5 5 HELIX 25 AC7 PRO A 538 GLN A 552 1 15 HELIX 26 AC8 PRO A 574 ASN A 581 5 8 HELIX 27 AC9 SER B 64 ASN B 69 5 6 HELIX 28 AD1 TRP B 75 VAL B 86 1 12 HELIX 29 AD2 LEU B 95 SER B 105 1 11 HELIX 30 AD3 SER B 120 CYS B 129 1 10 HELIX 31 AD4 LEU B 140 LEU B 154 1 15 HELIX 32 AD5 PRO B 166 ASN B 179 1 14 HELIX 33 AD6 PRO B 191 LYS B 196 1 6 HELIX 34 AD7 SER B 197 ALA B 210 1 14 HELIX 35 AD8 VAL B 221 SER B 225 5 5 HELIX 36 AD9 ARG B 232 ALA B 237 5 6 HELIX 37 AE1 LEU B 238 PHE B 245 1 8 HELIX 38 AE2 THR B 258 LEU B 269 1 12 HELIX 39 AE3 ASN B 296 TYR B 312 1 17 HELIX 40 AE4 SER B 323 LEU B 337 1 15 HELIX 41 AE5 GLU B 349 ALA B 362 1 14 HELIX 42 AE6 SER B 394 GLY B 403 1 10 HELIX 43 AE7 GLY B 419 VAL B 430 1 12 HELIX 44 AE8 VAL B 435 ASN B 449 1 15 HELIX 45 AE9 CYS B 453 PHE B 462 1 10 HELIX 46 AF1 SER B 467 ASN B 472 1 6 HELIX 47 AF2 CYS B 475 LYS B 480 1 6 HELIX 48 AF3 VAL B 489 LEU B 506 1 18 HELIX 49 AF4 LYS B 514 GLY B 521 1 8 HELIX 50 AF5 ALA B 524 ARG B 528 5 5 HELIX 51 AF6 PRO B 538 GLN B 552 1 15 HELIX 52 AF7 PRO B 574 ASN B 581 5 8 SHEET 1 AA1 7 ALA A 158 LEU A 161 0 SHEET 2 AA1 7 LEU A 186 VAL A 189 1 O TYR A 188 N THR A 159 SHEET 3 AA1 7 PHE A 133 ILE A 137 1 N VAL A 136 O ILE A 187 SHEET 4 AA1 7 PHE A 213 ASP A 219 1 O ALA A 217 N ILE A 137 SHEET 5 AA1 7 SER A 249 THR A 254 1 O SER A 249 N ILE A 216 SHEET 6 AA1 7 VAL A 109 VAL A 112 1 N LEU A 111 O GLY A 252 SHEET 7 AA1 7 PHE A 275 THR A 278 1 O PHE A 275 N PHE A 110 SHEET 1 AA2 6 LEU A 286 GLN A 292 0 SHEET 2 AA2 6 ALA A 412 TYR A 418 1 O CYS A 414 N TYR A 287 SHEET 3 AA2 6 PHE A 385 HIS A 388 1 N HIS A 388 O ILE A 415 SHEET 4 AA2 6 GLY A 317 TYR A 320 1 N ILE A 318 O ILE A 387 SHEET 5 AA2 6 VAL A 367 ALA A 370 1 O ALA A 370 N ILE A 319 SHEET 6 AA2 6 ALA A 341 ALA A 343 1 N GLY A 342 O VAL A 369 SHEET 1 AA3 2 PHE A 484 ASN A 488 0 SHEET 2 AA3 2 THR A 587 LYS A 591 -1 O VAL A 590 N GLU A 485 SHEET 1 AA4 2 LEU A 555 PHE A 561 0 SHEET 2 AA4 2 THR A 566 VAL A 572 -1 O TYR A 569 N ASP A 558 SHEET 1 AA5 7 ALA B 158 LEU B 161 0 SHEET 2 AA5 7 LEU B 186 VAL B 189 1 O TYR B 188 N THR B 159 SHEET 3 AA5 7 PHE B 133 ILE B 137 1 N VAL B 136 O VAL B 189 SHEET 4 AA5 7 PHE B 213 ASP B 219 1 O ALA B 217 N ILE B 137 SHEET 5 AA5 7 SER B 249 THR B 254 1 O SER B 249 N ILE B 216 SHEET 6 AA5 7 GLU B 108 VAL B 112 1 N LEU B 111 O GLY B 252 SHEET 7 AA5 7 CYS B 274 THR B 278 1 O PHE B 275 N PHE B 110 SHEET 1 AA6 6 LEU B 286 GLN B 292 0 SHEET 2 AA6 6 ALA B 412 TYR B 418 1 O CYS B 414 N TYR B 287 SHEET 3 AA6 6 PHE B 385 HIS B 388 1 N HIS B 388 O ILE B 415 SHEET 4 AA6 6 GLY B 317 CYS B 321 1 N TYR B 320 O ILE B 387 SHEET 5 AA6 6 VAL B 367 THR B 371 1 O ALA B 370 N CYS B 321 SHEET 6 AA6 6 ALA B 341 TYR B 344 1 N TYR B 344 O VAL B 369 SHEET 1 AA7 2 PHE B 484 ASN B 488 0 SHEET 2 AA7 2 THR B 587 LYS B 591 -1 O VAL B 590 N GLU B 485 SHEET 1 AA8 2 LEU B 555 PHE B 561 0 SHEET 2 AA8 2 THR B 566 VAL B 572 -1 O TYR B 569 N ASP B 558 LINK SG CYS A 453 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 471 ZN ZN A1001 1555 1555 2.32 LINK SG CYS A 475 ZN ZN A1001 1555 1555 2.31 LINK SG CYS A 478 ZN ZN A1001 1555 1555 2.31 LINK O2B ADP A1002 MG MG A1003 1555 1555 2.28 LINK MG MG A1003 O HOH A1112 1555 1555 2.42 LINK MG MG A1003 O HOH A1121 1555 1555 2.21 LINK SG CYS B 453 ZN ZN B1001 1555 1555 2.32 LINK SG CYS B 471 ZN ZN B1001 1555 1555 2.33 LINK SG CYS B 475 ZN ZN B1001 1555 1555 2.32 LINK SG CYS B 478 ZN ZN B1001 1555 1555 2.31 LINK O2B ADP B1002 MG MG B1003 1555 1555 2.98 LINK MG MG B1003 O HOH B1111 1555 1555 2.12 LINK MG MG B1003 O HOH B1113 1555 1555 2.01 CRYST1 55.576 117.224 203.819 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008531 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004906 0.00000 CONECT 3118 8469 CONECT 3269 8469 CONECT 3300 8469 CONECT 3322 8469 CONECT 7348 8498 CONECT 7499 8498 CONECT 7530 8498 CONECT 7552 8498 CONECT 8469 3118 3269 3300 3322 CONECT 8470 8471 8472 8473 8477 CONECT 8471 8470 CONECT 8472 8470 8497 CONECT 8473 8470 CONECT 8474 8475 8476 8477 8478 CONECT 8475 8474 CONECT 8476 8474 CONECT 8477 8470 8474 CONECT 8478 8474 8479 CONECT 8479 8478 8480 CONECT 8480 8479 8481 8482 CONECT 8481 8480 8486 CONECT 8482 8480 8483 8484 CONECT 8483 8482 CONECT 8484 8482 8485 8486 CONECT 8485 8484 CONECT 8486 8481 8484 8487 CONECT 8487 8486 8488 8496 CONECT 8488 8487 8489 CONECT 8489 8488 8490 CONECT 8490 8489 8491 8496 CONECT 8491 8490 8492 8493 CONECT 8492 8491 CONECT 8493 8491 8494 CONECT 8494 8493 8495 CONECT 8495 8494 8496 CONECT 8496 8487 8490 8495 CONECT 8497 8472 8538 8547 CONECT 8498 7348 7499 7530 7552 CONECT 8499 8500 8501 8502 8506 CONECT 8500 8499 CONECT 8501 8499 8526 CONECT 8502 8499 CONECT 8503 8504 8505 8506 8507 CONECT 8504 8503 CONECT 8505 8503 CONECT 8506 8499 8503 CONECT 8507 8503 8508 CONECT 8508 8507 8509 CONECT 8509 8508 8510 8511 CONECT 8510 8509 8515 CONECT 8511 8509 8512 8513 CONECT 8512 8511 CONECT 8513 8511 8514 8515 CONECT 8514 8513 CONECT 8515 8510 8513 8516 CONECT 8516 8515 8517 8525 CONECT 8517 8516 8518 CONECT 8518 8517 8519 CONECT 8519 8518 8520 8525 CONECT 8520 8519 8521 8522 CONECT 8521 8520 CONECT 8522 8520 8523 CONECT 8523 8522 8524 CONECT 8524 8523 8525 CONECT 8525 8516 8519 8524 CONECT 8526 8501 8594 8596 CONECT 8538 8497 CONECT 8547 8497 CONECT 8594 8526 CONECT 8596 8526 MASTER 412 0 6 52 34 0 0 6 8618 2 70 82 END