HEADER RNA BINDING PROTEIN 02-SEP-20 7A9X TITLE STRUCTURE OF YEAST RMD9P IN COMPLEX WITH 16NT TARGET RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RMD9, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 9; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*AP*AP*AP*UP*AP*AP*CP*AP*UP*UP*CP*UP*U)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: RMD9, YGL107C, G3075; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS MITOCHONDRIA, TRANSLATION, TRANSCRIPTION, DEGRADATION, RIBOSOME, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.S.HILLEN,D.A.MARKOV,W.D.IRENEUSZ,K.B.HOFMANN,A.T.COWAN,J.L.JONES, AUTHOR 2 D.TEMIAKOV,P.CRAMER,M.ANIKIN REVDAT 3 31-JAN-24 7A9X 1 REMARK REVDAT 2 05-MAY-21 7A9X 1 JRNL REVDAT 1 07-APR-21 7A9X 0 JRNL AUTH H.S.HILLEN,D.A.MARKOV,I.D.WOJTAS,K.B.HOFMANN,M.LIDSCHREIBER, JRNL AUTH 2 A.T.COWAN,J.L.JONES,D.TEMIAKOV,P.CRAMER,M.ANIKIN JRNL TITL THE PENTATRICOPEPTIDE REPEAT PROTEIN RMD9 RECOGNIZES THE JRNL TITL 2 DODECAMERIC ELEMENT IN THE 3'-UTRS OF YEAST MITOCHONDRIAL JRNL TITL 3 MRNAS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33876744 JRNL DOI 10.1073/PNAS.2009329118 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0100 - 6.7500 1.00 2696 148 0.1633 0.2065 REMARK 3 2 6.7500 - 5.3600 1.00 2686 141 0.2031 0.2433 REMARK 3 3 5.3600 - 4.6900 1.00 2705 143 0.1691 0.2096 REMARK 3 4 4.6900 - 4.2600 1.00 2689 142 0.1648 0.1841 REMARK 3 5 4.2600 - 3.9500 1.00 2690 142 0.1737 0.2066 REMARK 3 6 3.9500 - 3.7200 1.00 2723 139 0.1838 0.2440 REMARK 3 7 3.7200 - 3.5300 1.00 2693 150 0.2087 0.2329 REMARK 3 8 3.5300 - 3.3800 1.00 2732 139 0.2055 0.2291 REMARK 3 9 3.3800 - 3.2500 1.00 2665 141 0.2225 0.2645 REMARK 3 10 3.2500 - 3.1400 1.00 2698 139 0.2300 0.2983 REMARK 3 11 3.1400 - 3.0400 1.00 2667 144 0.2336 0.2451 REMARK 3 12 3.0400 - 2.9500 1.00 2707 140 0.2548 0.2853 REMARK 3 13 2.9500 - 2.8700 1.00 2690 149 0.2414 0.3017 REMARK 3 14 2.8700 - 2.8000 1.00 2724 144 0.2647 0.2382 REMARK 3 15 2.8000 - 2.7400 1.00 2694 139 0.2647 0.2743 REMARK 3 16 2.7400 - 2.6800 1.00 2698 143 0.2625 0.2837 REMARK 3 17 2.6800 - 2.6300 1.00 2744 145 0.2888 0.3201 REMARK 3 18 2.6300 - 2.5800 1.00 2650 146 0.2966 0.3228 REMARK 3 19 2.5800 - 2.5300 1.00 2671 132 0.3210 0.3400 REMARK 3 20 2.5300 - 2.4900 1.00 2714 144 0.3375 0.3748 REMARK 3 21 2.4900 - 2.4500 1.00 2697 136 0.3553 0.3802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.372 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.846 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4600 REMARK 3 ANGLE : 0.429 6283 REMARK 3 CHIRALITY : 0.035 700 REMARK 3 PLANARITY : 0.003 749 REMARK 3 DIHEDRAL : 18.165 2718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3619 83.4950 11.9159 REMARK 3 T TENSOR REMARK 3 T11: 0.7660 T22: 0.6300 REMARK 3 T33: 0.8809 T12: -0.0528 REMARK 3 T13: 0.0944 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 3.3981 L22: 2.7674 REMARK 3 L33: 3.2227 L12: -1.7189 REMARK 3 L13: -0.9001 L23: 0.8957 REMARK 3 S TENSOR REMARK 3 S11: 0.3783 S12: 0.1379 S13: 0.6415 REMARK 3 S21: -0.3439 S22: -0.1430 S23: -0.1136 REMARK 3 S31: -0.4312 S32: 0.0969 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1349 62.7589 31.7274 REMARK 3 T TENSOR REMARK 3 T11: 0.7590 T22: 0.8259 REMARK 3 T33: 0.6941 T12: -0.0639 REMARK 3 T13: 0.0397 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.4189 L22: 3.3456 REMARK 3 L33: 1.4738 L12: -1.7989 REMARK 3 L13: 0.5892 L23: -0.9731 REMARK 3 S TENSOR REMARK 3 S11: -0.1526 S12: -0.5276 S13: -0.1719 REMARK 3 S21: 0.2961 S22: 0.2709 S23: 0.2977 REMARK 3 S31: 0.1958 S32: -0.3299 S33: 0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 440 THROUGH 639 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2350 54.5449 17.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.9274 T22: 1.1308 REMARK 3 T33: 0.8079 T12: 0.2963 REMARK 3 T13: 0.1066 T23: 0.1060 REMARK 3 L TENSOR REMARK 3 L11: 4.5675 L22: 1.3616 REMARK 3 L33: 3.4503 L12: 0.2596 REMARK 3 L13: 0.4142 L23: -1.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.7340 S13: -0.1622 REMARK 3 S21: -0.3275 S22: -0.3069 S23: -0.3995 REMARK 3 S31: 0.9339 S32: 1.2374 S33: -0.0023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8115 70.2666 16.9886 REMARK 3 T TENSOR REMARK 3 T11: 0.7399 T22: 0.7036 REMARK 3 T33: 0.8943 T12: -0.0699 REMARK 3 T13: -0.0039 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 0.4470 L22: 0.6773 REMARK 3 L33: 2.1289 L12: -0.5557 REMARK 3 L13: -0.0353 L23: 0.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.1718 S12: 0.4077 S13: 0.6232 REMARK 3 S21: 0.1442 S22: -0.1150 S23: -0.1850 REMARK 3 S31: -0.0240 S32: 0.1544 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.25 REMARK 200 R MERGE FOR SHELL (I) : 2.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7A9W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-CACODYLATE, NACL, LISO4, CAACETATE, REMARK 280 MGCL2, PEG8000, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.84000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.68000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.68000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 SER A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 LYS A 52 REMARK 465 ASN A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 LYS A 56 REMARK 465 GLY A 57 REMARK 465 VAL A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 LYS A 61 REMARK 465 LYS A 62 REMARK 465 ASN A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 GLU A 66 REMARK 465 GLN A 67 REMARK 465 ARG A 68 REMARK 465 LYS A 69 REMARK 465 THR A 70 REMARK 465 GLU A 71 REMARK 465 GLN A 72 REMARK 465 ASN A 73 REMARK 465 VAL A 74 REMARK 465 PHE A 75 REMARK 465 ASN A 76 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 PRO A 79 REMARK 465 LEU A 105 REMARK 465 GLN A 106 REMARK 465 ASN A 107 REMARK 465 THR A 108 REMARK 465 TYR A 109 REMARK 465 LYS A 110 REMARK 465 ARG A 111 REMARK 465 ILE A 112 REMARK 465 GLY A 113 REMARK 465 ASN A 114 REMARK 465 ASN A 115 REMARK 465 GLN A 116 REMARK 465 LEU A 117 REMARK 465 ASN A 118 REMARK 465 LYS A 547 REMARK 465 ALA A 548 REMARK 465 LYS A 549 REMARK 465 GLY A 550 REMARK 465 THR A 551 REMARK 465 PRO A 552 REMARK 465 ALA A 553 REMARK 465 THR A 554 REMARK 465 THR A 555 REMARK 465 THR A 556 REMARK 465 THR A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 ASP A 561 REMARK 465 ILE A 562 REMARK 465 LYS A 563 REMARK 465 VAL A 564 REMARK 465 PRO A 565 REMARK 465 LYS A 566 REMARK 465 PRO A 567 REMARK 465 LEU A 568 REMARK 465 GLU A 569 REMARK 465 ASN A 570 REMARK 465 LEU A 571 REMARK 465 LYS A 572 REMARK 465 ASN A 573 REMARK 465 GLU A 574 REMARK 465 ASP A 575 REMARK 465 SER A 576 REMARK 465 THR A 577 REMARK 465 SER A 578 REMARK 465 ASN A 579 REMARK 465 SER A 640 REMARK 465 PHE A 641 REMARK 465 ILE A 642 REMARK 465 ALA A 643 REMARK 465 LYS A 644 REMARK 465 GLU A 645 REMARK 465 GLN A 646 REMARK 465 A B 3 REMARK 465 A B 17 REMARK 465 A B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 627 CG OD1 OD2 REMARK 470 LEU A 628 CG CD1 CD2 REMARK 470 SER A 629 OG REMARK 470 GLU A 631 CG CD OE1 OE2 REMARK 470 ASP A 632 CG OD1 OD2 REMARK 470 ILE A 633 CG1 CG2 CD1 REMARK 470 VAL A 635 CG1 CG2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 LEU A 638 CG CD1 CD2 REMARK 470 HIS A 639 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 83 38.28 -97.37 REMARK 500 PHE A 226 54.60 -117.16 REMARK 500 ASN A 239 62.10 -100.31 REMARK 500 TYR A 418 34.51 -96.19 REMARK 500 ASP A 421 84.64 -157.85 REMARK 500 THR A 531 -72.35 -129.08 REMARK 500 THR A 608 -80.39 -141.19 REMARK 500 VAL A 635 70.11 -156.07 REMARK 500 GLN A 637 -75.39 -142.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A9W RELATED DB: PDB DBREF 7A9X A 51 646 UNP P53140 RMD9_YEAST 51 646 DBREF 7A9X B 3 18 PDB 7A9X 7A9X 3 18 SEQADV 7A9X MET A 44 UNP P53140 INITIATING METHIONINE SEQADV 7A9X SER A 45 UNP P53140 EXPRESSION TAG SEQADV 7A9X HIS A 46 UNP P53140 EXPRESSION TAG SEQADV 7A9X HIS A 47 UNP P53140 EXPRESSION TAG SEQADV 7A9X HIS A 48 UNP P53140 EXPRESSION TAG SEQADV 7A9X HIS A 49 UNP P53140 EXPRESSION TAG SEQADV 7A9X HIS A 50 UNP P53140 EXPRESSION TAG SEQRES 1 A 603 MET SER HIS HIS HIS HIS HIS HIS LYS ASN VAL PRO LYS SEQRES 2 A 603 GLY VAL LEU ASP LYS LYS ASN GLY ARG GLU GLN ARG LYS SEQRES 3 A 603 THR GLU GLN ASN VAL PHE ASN VAL ASP PRO ALA SER PRO SEQRES 4 A 603 TRP ARG HIS GLU LEU LEU SER PHE ASP GLU CAS VAL SER SEQRES 5 A 603 SER ALA LEU LYS TYR SER THR THR PRO LEU GLN ASN THR SEQRES 6 A 603 TYR LYS ARG ILE GLY ASN ASN GLN LEU ASN LYS ASN PRO SEQRES 7 A 603 SER PHE ALA MET PHE TRP ASP SER MET GLY ARG ALA MET SEQRES 8 A 603 GLU LEU TYR TYR SER LEU ARG GLU SER PRO ASP PHE ASN SEQRES 9 A 603 ALA TYR ARG VAL SER ARG LEU ILE HIS LEU LEU HIS ASN SEQRES 10 A 603 GLY LEU ARG SER THR ARG ASP GLN LEU VAL LYS LEU SER SEQRES 11 A 603 ARG LYS PRO ASP TYR ASP SER GLN SER PHE HIS LYS GLU SEQRES 12 A 603 MET MET ASN PHE LEU CAS ASN SER LEU LYS ASP ILE SER SEQRES 13 A 603 ASP ASP ILE LEU ILE GLY LYS VAL SER VAL SER GLY TYR SEQRES 14 A 603 GLY ALA THR HIS LEU LEU THR SER PHE LYS GLU LEU SER SEQRES 15 A 603 PHE ASP ASP ASP CYS ILE ARG ILE TRP GLU ALA SER LYS SEQRES 16 A 603 ASN LEU SER ASP GLU THR THR SER GLN ALA PHE GLN GLU SEQRES 17 A 603 PRO LYS VAL VAL GLY PHE MET LEU PRO LEU LEU TYR ALA SEQRES 18 A 603 LYS THR ARG SER LEU THR GLU PRO ASN GLU LEU TYR ASN SEQRES 19 A 603 GLN ILE ILE GLN SER LYS GLU PHE ILE HIS PRO ASN LEU SEQRES 20 A 603 TYR SER GLY LEU ILE LYS VAL PHE ILE LYS ALA GLU ASP SEQRES 21 A 603 TYR GLU LYS ALA LEU SER LEU PHE GLY GLN LEU CAS GLU SEQRES 22 A 603 LYS ALA GLU VAL ARG ASN TYR GLY TYR LEU ILE GLU THR SEQRES 23 A 603 HIS LEU SER PHE ILE GLY ASP SER LYS ASN LEU THR LEU SEQRES 24 A 603 ALA GLU SER PHE PHE ASP LYS ILE ILE ASN ASP GLU MET SEQRES 25 A 603 PRO TYR LYS ILE ILE LEU GLN VAL SER THR VAL ASN SER SEQRES 26 A 603 PHE LEU GLN ASN ILE TRP LYS ALA GLN ASN ASP PHE ASP SEQRES 27 A 603 HIS VAL TYR ARG ILE TRP GLU LYS ALA VAL LYS PHE TYR SEQRES 28 A 603 GLY ASN THR VAL ASN PRO GLY ILE LEU SER SER LEU ASN SEQRES 29 A 603 ASN THR PHE PHE THR ILE PHE PHE GLU ASN TYR ILE ASN SEQRES 30 A 603 ASP ASN ILE ASN GLY PHE ARG LYS LEU GLN GLU ILE ILE SEQRES 31 A 603 THR PHE TYR SER GLY VAL LYS LYS ILE ASP GLU PRO PHE SEQRES 32 A 603 PHE ASN VAL MET LEU THR ARG ALA SER ILE TRP HIS GLU SEQRES 33 A 603 ARG SER ILE ILE ASP PHE ILE ASP LYS ASN TYR THR LEU SEQRES 34 A 603 TYR HIS ILE PRO ARG THR ILE ILE SER TYR ARG ILE LEU SEQRES 35 A 603 LEU LYS SER LEU GLY SER ILE ASP ASN THR ASN ASN GLU SEQRES 36 A 603 GLU ILE LEU ASP ARG TRP LEU GLU LEU VAL LYS LYS LEU SEQRES 37 A 603 ASN GLU LEU GLY GLN GLN TYR ILE ALA ASN ALA ASP LEU SEQRES 38 A 603 SER ALA LEU ARG ASP ALA THR VAL VAL TRP SER GLN SER SEQRES 39 A 603 LYS ARG ASP GLU LYS VAL PHE SER ALA LYS ALA LYS GLY SEQRES 40 A 603 THR PRO ALA THR THR THR THR THR GLU ASP ASP ILE LYS SEQRES 41 A 603 VAL PRO LYS PRO LEU GLU ASN LEU LYS ASN GLU ASP SER SEQRES 42 A 603 THR SER ASN SER GLU ASP ARG ILE GLU LEU TYR LEU LYS SEQRES 43 A 603 ILE LEU LYS ARG TYR THR PRO TYR PHE ARG ALA THR LYS SEQRES 44 A 603 GLN VAL TYR ARG TYR THR THR GLY CYS ALA GLU SER TYR SEQRES 45 A 603 PRO ILE LEU ASN GLU TYR LEU SER GLY TYR SER ASP LEU SEQRES 46 A 603 SER ALA GLU ASP ILE PRO VAL PRO GLN LEU HIS SER PHE SEQRES 47 A 603 ILE ALA LYS GLU GLN SEQRES 1 B 16 A A A A U A A C A U U C U SEQRES 2 B 16 U A A MODRES 7A9X CAS A 93 CYS MODIFIED RESIDUE MODRES 7A9X CAS A 192 CYS MODIFIED RESIDUE MODRES 7A9X CAS A 315 CYS MODIFIED RESIDUE HET CAS A 93 9 HET CAS A 192 9 HET CAS A 315 9 HET CL A 701 1 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM CL CHLORIDE ION FORMUL 1 CAS 3(C5 H12 AS N O2 S) FORMUL 3 CL CL 1- FORMUL 4 HOH *79(H2 O) HELIX 1 AA1 TRP A 83 THR A 103 1 21 HELIX 2 AA2 ASN A 120 ARG A 141 1 22 HELIX 3 AA3 ASN A 147 LEU A 172 1 26 HELIX 4 AA4 SER A 182 GLY A 205 1 24 HELIX 5 AA5 SER A 210 LEU A 224 1 15 HELIX 6 AA6 PHE A 226 SER A 237 1 12 HELIX 7 AA7 ASP A 242 PHE A 249 1 8 HELIX 8 AA8 GLU A 251 ARG A 267 1 17 HELIX 9 AA9 LEU A 269 GLN A 281 1 13 HELIX 10 AB1 HIS A 287 ALA A 301 1 15 HELIX 11 AB2 ASP A 303 ALA A 318 1 16 HELIX 12 AB3 GLU A 319 ASN A 322 5 4 HELIX 13 AB4 TYR A 323 ASP A 336 1 14 HELIX 14 AB5 ASN A 339 ASN A 352 1 14 HELIX 15 AB6 GLN A 362 ASN A 378 1 17 HELIX 16 AB7 ASP A 379 GLY A 395 1 17 HELIX 17 AB8 ASN A 399 TYR A 418 1 20 HELIX 18 AB9 ASP A 421 LYS A 440 1 20 HELIX 19 AC1 ASP A 443 ALA A 454 1 12 HELIX 20 AC2 SER A 455 TRP A 457 5 3 HELIX 21 AC3 GLU A 459 TYR A 473 1 15 HELIX 22 AC4 THR A 478 LEU A 489 1 12 HELIX 23 AC5 GLY A 490 ILE A 492 5 3 HELIX 24 AC6 ASN A 496 LEU A 514 1 19 HELIX 25 AC7 ALA A 520 ALA A 530 1 11 HELIX 26 AC8 THR A 531 ALA A 546 1 16 HELIX 27 AC9 ASP A 582 THR A 595 1 14 HELIX 28 AD1 PRO A 596 PHE A 598 5 3 HELIX 29 AD2 THR A 601 TYR A 607 1 7 HELIX 30 AD3 THR A 608 TYR A 615 1 8 HELIX 31 AD4 PRO A 616 LEU A 622 5 7 LINK C GLU A 92 N CAS A 93 1555 1555 1.33 LINK C CAS A 93 N VAL A 94 1555 1555 1.33 LINK C LEU A 191 N CAS A 192 1555 1555 1.33 LINK C CAS A 192 N ASN A 193 1555 1555 1.33 LINK C LEU A 314 N CAS A 315 1555 1555 1.33 LINK C CAS A 315 N GLU A 316 1555 1555 1.33 CRYST1 106.250 106.250 128.520 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009412 0.005434 0.000000 0.00000 SCALE2 0.000000 0.010868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007781 0.00000