HEADER SIGNALING PROTEIN 10-SEP-20 7ACA TITLE CRYSTAL STRUCTURE OF AN ACTIVE KRAS G12D (GPPCP) DIMER IN COMPLEX WITH TITLE 2 BI-5747 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIENNA, PPI, KRAS; DIMER, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KESSLER REVDAT 2 31-JAN-24 7ACA 1 REMARK REVDAT 1 18-NOV-20 7ACA 0 JRNL AUTH D.KESSLER JRNL TITL CRYSTAL STRUCTURE OF AN ACTIVE KRAS G12D (GPPCP) DIMER IN JRNL TITL 2 COMPLEX WITH BI-5747 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 88872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1858 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.46 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6403 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2200 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6250 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 236 REMARK 3 SOLVENT ATOMS : 515 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.89540 REMARK 3 B22 (A**2) : -0.81150 REMARK 3 B33 (A**2) : 3.70680 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.70580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.095 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.087 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.092 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.085 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5642 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7652 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2052 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 162 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 781 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5642 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 731 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7159 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.97 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.06 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.1073 -0.3665 57.8769 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: -0.0442 REMARK 3 T33: -0.0371 T12: -0.0010 REMARK 3 T13: -0.0188 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.6962 L22: 0.8324 REMARK 3 L33: 1.0733 L12: 0.0026 REMARK 3 L13: 0.2007 L23: -0.3699 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0625 S13: 0.0218 REMARK 3 S21: -0.0180 S22: -0.0031 S23: 0.0486 REMARK 3 S31: 0.0058 S32: -0.0520 S33: 0.0249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 53.8514 5.0793 106.3527 REMARK 3 T TENSOR REMARK 3 T11: -0.0208 T22: -0.0553 REMARK 3 T33: -0.0363 T12: -0.0007 REMARK 3 T13: -0.0149 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.9803 L22: 0.7866 REMARK 3 L33: 1.2387 L12: 0.3132 REMARK 3 L13: 0.2925 L23: 0.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.0936 S13: 0.0486 REMARK 3 S21: 0.0425 S22: -0.0344 S23: 0.0216 REMARK 3 S31: 0.0172 S32: 0.0105 S33: 0.0221 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.1423 -6.6407 94.2308 REMARK 3 T TENSOR REMARK 3 T11: -0.0961 T22: -0.0298 REMARK 3 T33: -0.1034 T12: -0.0104 REMARK 3 T13: -0.0045 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.3350 L22: 1.2624 REMARK 3 L33: 2.8036 L12: 0.1219 REMARK 3 L13: 1.3506 L23: -0.4717 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.2947 S13: -0.0447 REMARK 3 S21: 0.0324 S22: 0.1133 S23: 0.1033 REMARK 3 S31: 0.0454 S32: -0.4689 S33: -0.0706 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 49.4509 -3.5781 70.5367 REMARK 3 T TENSOR REMARK 3 T11: -0.0905 T22: -0.0778 REMARK 3 T33: -0.1189 T12: -0.0081 REMARK 3 T13: 0.0148 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.6206 L22: 1.8334 REMARK 3 L33: 3.0520 L12: 1.0269 REMARK 3 L13: 1.5475 L23: 1.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.1392 S12: 0.3066 S13: -0.1710 REMARK 3 S21: -0.2115 S22: 0.2156 S23: -0.1532 REMARK 3 S31: -0.1012 S32: 0.3598 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { G|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.9702 -5.3574 82.2353 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: -0.0257 REMARK 3 T33: -0.0108 T12: 0.0074 REMARK 3 T13: -0.0088 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.1912 L22: 0.0000 REMARK 3 L33: 0.0391 L12: 0.0869 REMARK 3 L13: 0.1832 L23: 0.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.0036 S13: -0.0484 REMARK 3 S21: 0.0069 S22: 0.0055 S23: 0.0015 REMARK 3 S31: 0.0696 S32: 0.0129 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { X|* } REMARK 3 ORIGIN FOR THE GROUP (A): 36.5217 -1.9697 82.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0065 REMARK 3 T33: -0.0352 T12: 0.0079 REMARK 3 T13: -0.0277 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6796 L22: 0.0000 REMARK 3 L33: 0.1191 L12: -0.0122 REMARK 3 L13: 0.4148 L23: -0.1934 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0197 S13: -0.0146 REMARK 3 S21: -0.0126 S22: 0.0391 S23: 0.0072 REMARK 3 S31: 0.0448 S32: -0.0151 S33: -0.0010 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ACA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999989 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88922 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 68.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6QUU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN D12 MORPHEUS ALCOHOL REMARK 280 10% MORPHEUS BUFFER 3 MPD_P1K_P3350 37.5% W/V, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.59250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLY B 0 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 465 GLY C 0 REMARK 465 GLU C 62 REMARK 465 GLU C 63 REMARK 465 TYR C 64 REMARK 465 SER C 65 REMARK 465 ALA C 66 REMARK 465 GLU C 168 REMARK 465 LYS C 169 REMARK 465 GLY D 0 REMARK 465 GLU D 168 REMARK 465 LYS D 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -66.38 -95.03 REMARK 500 GLU A 37 123.05 -170.46 REMARK 500 ASP A 108 45.85 -106.60 REMARK 500 ILE B 36 -62.61 -95.88 REMARK 500 ILE C 36 -65.74 -96.04 REMARK 500 ILE D 36 -65.41 -95.59 REMARK 500 LYS D 117 34.35 70.28 REMARK 500 ARG D 149 4.17 81.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 413 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH C 414 DISTANCE = 7.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.9 REMARK 620 3 GCP A 202 O1G 172.5 92.3 REMARK 620 4 GCP A 202 O2B 90.1 172.5 94.9 REMARK 620 5 HOH A 301 O 79.4 91.8 95.0 89.7 REMARK 620 6 HOH A 303 O 91.0 91.1 94.9 86.2 169.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 THR B 35 OG1 84.6 REMARK 620 3 GCP B 202 O1G 175.3 90.7 REMARK 620 4 GCP B 202 O2B 88.9 173.3 95.8 REMARK 620 5 HOH B 301 O 80.5 83.6 98.3 97.3 REMARK 620 6 HOH B 303 O 92.4 96.3 88.9 82.1 172.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 THR C 35 OG1 81.4 REMARK 620 3 GCP C 202 O1G 171.4 90.7 REMARK 620 4 GCP C 202 O2B 90.5 171.5 97.5 REMARK 620 5 HOH C 302 O 87.1 85.0 95.6 92.0 REMARK 620 6 HOH C 303 O 89.3 88.4 87.1 94.1 172.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 17 OG REMARK 620 2 THR D 35 OG1 82.9 REMARK 620 3 GCP D 202 O2B 91.1 173.5 REMARK 620 4 GCP D 202 O3G 170.6 89.4 96.9 REMARK 620 5 HOH D 301 O 85.0 90.0 91.8 89.7 REMARK 620 6 HOH D 305 O 85.5 86.7 90.6 99.4 170.3 REMARK 620 N 1 2 3 4 5 DBREF 7ACA A 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7ACA B 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7ACA C 1 169 UNP P01116 RASK_HUMAN 1 169 DBREF 7ACA D 1 169 UNP P01116 RASK_HUMAN 1 169 SEQADV 7ACA GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 7ACA ASP A 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7ACA GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 7ACA ASP B 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7ACA GLY C 0 UNP P01116 EXPRESSION TAG SEQADV 7ACA ASP C 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQADV 7ACA GLY D 0 UNP P01116 EXPRESSION TAG SEQADV 7ACA ASP D 12 UNP P01116 GLY 12 ENGINEERED MUTATION SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 B 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 B 170 LYS SEQRES 1 C 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 C 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 C 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 C 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 C 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 C 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 C 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 C 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 C 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 C 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 C 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 C 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 C 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 C 170 LYS SEQRES 1 D 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA ASP SEQRES 2 D 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 D 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 D 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 D 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 D 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 D 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 D 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 D 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 D 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 D 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 D 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 D 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 D 170 LYS HET MG A 201 1 HET GCP A 202 32 HET R6W A 203 50 HET MG B 201 1 HET GCP B 202 32 HET R6W B 203 50 HET MG C 201 1 HET GCP C 202 32 HET EDO C 203 4 HET MG D 201 1 HET GCP D 202 32 HETNAM MG MAGNESIUM ION HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM R6W (3~{S})-5-OXIDANYL-3-[2-[[6-[[3-[(1~{S})-6-OXIDANYL-3- HETNAM 2 R6W OXIDANYLIDENE-1,2-DIHYDROISOINDOL-1-YL]-1~{H}-INDOL-2- HETNAM 3 R6W YL]METHYLAMINO]HEXYLAMINO]METHYL]-1~{H}-INDOL-3-YL]-2, HETNAM 4 R6W 3-DIHYDROISOINDOL-1-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG 4(MG 2+) FORMUL 6 GCP 4(C11 H18 N5 O13 P3) FORMUL 7 R6W 2(C40 H40 N6 O4) FORMUL 13 EDO C2 H6 O2 FORMUL 16 HOH *515(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 TYR A 64 MET A 67 5 4 HELIX 3 AA3 ARG A 68 GLY A 75 1 8 HELIX 4 AA4 ASN A 86 ASP A 105 1 20 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 GLN B 61 ALA B 66 5 6 HELIX 9 AA9 MET B 67 GLY B 75 1 9 HELIX 10 AB1 ASN B 86 ASP B 105 1 20 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 LYS B 167 1 17 HELIX 13 AB4 GLY C 15 ASN C 26 1 12 HELIX 14 AB5 ARG C 68 GLY C 75 1 8 HELIX 15 AB6 ASN C 86 ASP C 105 1 20 HELIX 16 AB7 ASP C 126 GLY C 138 1 13 HELIX 17 AB8 GLY C 151 LYS C 167 1 17 HELIX 18 AB9 GLY D 15 ASN D 26 1 12 HELIX 19 AC1 TYR D 64 GLY D 75 1 12 HELIX 20 AC2 ASN D 86 ASP D 105 1 20 HELIX 21 AC3 ASP D 126 GLY D 138 1 13 HELIX 22 AC4 GLY D 151 LYS D 167 1 17 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 GLU B 37 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 THR B 58 -1 O CYS B 51 N VAL B 44 SHEET 3 AA2 6 THR B 2 VAL B 9 1 N LEU B 6 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 7 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 GLU C 37 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 THR C 58 -1 O CYS C 51 N VAL C 44 SHEET 3 AA3 6 THR C 2 VAL C 9 1 N LEU C 6 O LEU C 56 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 PHE C 141 GLU C 143 1 O ILE C 142 N LEU C 113 SHEET 1 AA4 6 GLU D 37 ILE D 46 0 SHEET 2 AA4 6 GLU D 49 THR D 58 -1 O ASP D 57 N ASP D 38 SHEET 3 AA4 6 THR D 2 VAL D 9 1 N TYR D 4 O ASP D 54 SHEET 4 AA4 6 GLY D 77 ALA D 83 1 O LEU D 79 N VAL D 7 SHEET 5 AA4 6 MET D 111 ASN D 116 1 O ASN D 116 N PHE D 82 SHEET 6 AA4 6 PHE D 141 GLU D 143 1 O ILE D 142 N LEU D 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.07 LINK OG1 THR A 35 MG MG A 201 1555 1555 2.07 LINK MG MG A 201 O1G GCP A 202 1555 1555 2.01 LINK MG MG A 201 O2B GCP A 202 1555 1555 2.00 LINK MG MG A 201 O HOH A 301 1555 1555 2.25 LINK MG MG A 201 O HOH A 303 1555 1555 2.28 LINK OG SER B 17 MG MG B 201 1555 1555 2.11 LINK OG1 THR B 35 MG MG B 201 1555 1555 2.04 LINK MG MG B 201 O1G GCP B 202 1555 1555 2.02 LINK MG MG B 201 O2B GCP B 202 1555 1555 2.07 LINK MG MG B 201 O HOH B 301 1555 1555 2.32 LINK MG MG B 201 O HOH B 303 1555 1555 2.25 LINK OG SER C 17 MG MG C 201 1555 1555 2.05 LINK OG1 THR C 35 MG MG C 201 1555 1555 2.12 LINK MG MG C 201 O1G GCP C 202 1555 1555 2.03 LINK MG MG C 201 O2B GCP C 202 1555 1555 2.03 LINK MG MG C 201 O HOH C 302 1555 1555 2.43 LINK MG MG C 201 O HOH C 303 1555 1555 2.14 LINK OG SER D 17 MG MG D 201 1555 1555 2.02 LINK OG1 THR D 35 MG MG D 201 1555 1555 2.10 LINK MG MG D 201 O2B GCP D 202 1555 1555 2.04 LINK MG MG D 201 O3G GCP D 202 1555 1555 1.95 LINK MG MG D 201 O HOH D 301 1555 1555 2.27 LINK MG MG D 201 O HOH D 305 1555 1555 2.22 CRYST1 69.264 67.185 71.435 90.00 96.47 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014438 0.000000 0.001637 0.00000 SCALE2 0.000000 0.014884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014088 0.00000