HEADER STRUCTURAL PROTEIN 11-SEP-20 7ACV TITLE SLPL/HID (LMW SLP COMPLEX WITH HMW SLP INTERACTING DOMAIN - HID) FROM TITLE 2 C. DIFFICILE (R7404 STRAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMW SLP; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LMW SLP FROM C. DIFFICILE S-LAYER; COMPND 5 SYNONYM: S-LAYER PROTEIN; COMPND 6 EC: 3.5.1.28; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HID - INTERACTING DOMAIN OF SLP HMW; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: HID - INTERACTING DOMAIN OF HMW SLP (SLPH) FROM C. COMPND 12 DIFFICILE S-LAYER; COMPND 13 SYNONYM: S-LAYER PROTEIN; COMPND 14 EC: 3.5.1.28; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 VARIANT: R7404; SOURCE 5 GENE: SLPA, SAMEA708418_00075; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 10 ORGANISM_TAXID: 1496; SOURCE 11 VARIANT: R7404; SOURCE 12 GENE: SLPA, SAMEA708418_00075; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BACTERIAL SURFACE LAYER PROTEIN, SLP LMW, SLP HMW INTERACTING DOMAIN KEYWDS 2 (HID), STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BARWINSKA-SENDRA,P.LANZONI-MANGUTCHI,P.S.SALGADO REVDAT 2 31-JAN-24 7ACV 1 REMARK REVDAT 1 09-MAR-22 7ACV 0 JRNL AUTH P.LANZONI-MANGUTCHI,O.BANERJI,J.WILSON,A.BARWINSKA-SENDRA, JRNL AUTH 2 J.A.KIRK,F.VAZ,S.O'BEIRNE,A.BASLE,K.EL OMARI,A.WAGNER, JRNL AUTH 3 N.F.FAIRWEATHER,G.R.DOUCE,P.A.BULLOUGH,R.P.FAGAN,P.S.SALGADO JRNL TITL STRUCTURE AND ASSEMBLY OF THE S-LAYER IN C. DIFFICILE. JRNL REF NAT COMMUN V. 13 970 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35217634 JRNL DOI 10.1038/S41467-022-28196-W REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 86.2000 - 5.1700 0.99 2959 160 0.2698 0.2926 REMARK 3 2 5.1700 - 4.1000 1.00 2837 133 0.2165 0.2618 REMARK 3 3 4.1000 - 3.5900 1.00 2840 116 0.2247 0.2590 REMARK 3 4 3.5900 - 3.2600 0.99 2756 127 0.2349 0.2903 REMARK 3 5 3.2600 - 3.0200 1.00 2804 143 0.2672 0.3253 REMARK 3 6 3.0200 - 2.8500 1.00 2778 136 0.2726 0.3323 REMARK 3 7 2.8500 - 2.7000 0.99 2718 139 0.2728 0.3218 REMARK 3 8 2.7000 - 2.5900 0.99 2774 140 0.2754 0.3891 REMARK 3 9 2.5900 - 2.4900 0.99 2707 139 0.2726 0.3474 REMARK 3 10 2.4900 - 2.4000 1.00 2766 158 0.3016 0.3491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.413 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.968 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3513 REMARK 3 ANGLE : 0.571 4750 REMARK 3 CHIRALITY : 0.046 572 REMARK 3 PLANARITY : 0.003 603 REMARK 3 DIHEDRAL : 5.215 482 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ACV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 86.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CVZ, D_1292110990 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 0.1 M MES REMARK 280 PH6.5, 35 % MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.43500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.72300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.72300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CHAIN B COULD NOT BE FULLY TRACED IN THE ELECTRON DENSITY MAPS, REMARK 400 WITH CONSIDERABLE REGIONS BEYOND RESIDUE 110 NOT MODELLED. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 314 REMARK 465 THR A 315 REMARK 465 LYS A 316 REMARK 465 SER A 317 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 LYS B 105 REMARK 465 LEU B 106 REMARK 465 GLN B 107 REMARK 465 GLN B 108 REMARK 465 TYR B 109 REMARK 465 ASN B 110 REMARK 465 ASP B 111 REMARK 465 LYS B 112 REMARK 465 VAL B 113 REMARK 465 LEU B 114 REMARK 465 ILE B 115 REMARK 465 ASN B 116 REMARK 465 SER B 117 REMARK 465 ALA B 118 REMARK 465 THR B 119 REMARK 465 ASP B 120 REMARK 465 THR B 121 REMARK 465 VAL B 122 REMARK 465 LYS B 123 REMARK 465 GLY B 124 REMARK 465 MET B 125 REMARK 465 VAL B 126 REMARK 465 SER B 127 REMARK 465 ASP B 128 REMARK 465 THR B 129 REMARK 465 GLN B 130 REMARK 465 VAL B 131 REMARK 465 ASP B 132 REMARK 465 SER B 133 REMARK 465 LYS B 134 REMARK 465 ASN B 135 REMARK 465 VAL B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 ASN B 139 REMARK 465 PRO B 140 REMARK 465 LEU B 141 REMARK 465 LYS B 142 REMARK 465 VAL B 143 REMARK 465 SER B 144 REMARK 465 ASP B 145 REMARK 465 MET B 146 REMARK 465 TYR B 147 REMARK 465 THR B 148 REMARK 465 ILE B 149 REMARK 465 PRO B 150 REMARK 465 SER B 151 REMARK 465 ALA B 152 REMARK 465 ILE B 153 REMARK 465 THR B 154 REMARK 465 GLY B 155 REMARK 465 LYS B 165 REMARK 465 PRO B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 LYS B 169 REMARK 465 THR B 170 REMARK 465 THR B 171 REMARK 465 SER B 172 REMARK 465 LEU B 173 REMARK 465 LEU B 174 REMARK 465 TYR B 175 REMARK 465 GLY B 176 REMARK 465 THR B 177 REMARK 465 VAL B 178 REMARK 465 GLY B 179 REMARK 465 ASP B 180 REMARK 465 ALA B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 GLY B 184 REMARK 465 LYS B 185 REMARK 465 ALA B 186 REMARK 465 ILE B 187 REMARK 465 THR B 188 REMARK 465 VAL B 189 REMARK 465 ASP B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 SER B 193 REMARK 465 ASN B 194 REMARK 465 GLU B 195 REMARK 465 ILE B 204 REMARK 465 ASP B 205 REMARK 465 TYR B 206 REMARK 465 ASN B 207 REMARK 465 LYS B 208 REMARK 465 SER B 209 REMARK 465 PHE B 210 REMARK 465 LYS B 211 REMARK 465 ALA B 212 REMARK 465 THR B 213 REMARK 465 VAL B 214 REMARK 465 GLN B 215 REMARK 465 GLY B 216 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 THR B 219 REMARK 465 VAL B 220 REMARK 465 LYS B 221 REMARK 465 THR B 222 REMARK 465 SER B 223 REMARK 465 GLY B 224 REMARK 465 VAL B 225 REMARK 465 VAL B 226 REMARK 465 LEU B 227 REMARK 465 LYS B 228 REMARK 465 ASP B 229 REMARK 465 ALA B 230 REMARK 465 SER B 231 REMARK 465 ASP B 232 REMARK 465 MET B 233 REMARK 465 ALA B 246 REMARK 465 LYS B 247 REMARK 465 GLU B 248 REMARK 465 GLU B 249 REMARK 465 SER B 250 REMARK 465 ILE B 251 REMARK 465 ASP B 252 REMARK 465 VAL B 253 REMARK 465 ASP B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 TYR B 258 REMARK 465 ILE B 259 REMARK 465 SER B 260 REMARK 465 ALA B 261 REMARK 465 GLU B 262 REMARK 465 ASN B 263 REMARK 465 LEU B 264 REMARK 465 ALA B 265 REMARK 465 LYS B 266 REMARK 465 LYS B 267 REMARK 465 TYR B 268 REMARK 465 VAL B 269 REMARK 465 PHE B 270 REMARK 465 ASN B 271 REMARK 465 PRO B 272 REMARK 465 LYS B 273 REMARK 465 GLU B 274 REMARK 465 VAL B 275 REMARK 465 SER B 276 REMARK 465 GLU B 277 REMARK 465 ALA B 278 REMARK 465 TYR B 279 REMARK 465 ASN B 280 REMARK 465 ALA B 281 REMARK 465 ILE B 282 REMARK 465 VAL B 283 REMARK 465 ALA B 284 REMARK 465 LEU B 285 REMARK 465 GLN B 286 REMARK 465 ASN B 287 REMARK 465 ASP B 288 REMARK 465 GLY B 289 REMARK 465 ILE B 290 REMARK 465 GLU B 291 REMARK 465 SER B 292 REMARK 465 ASP B 293 REMARK 465 LEU B 294 REMARK 465 VAL B 295 REMARK 465 GLN B 296 REMARK 465 LEU B 297 REMARK 465 VAL B 298 REMARK 465 ASN B 299 REMARK 465 GLY B 300 REMARK 465 LYS B 301 REMARK 465 TYR B 302 REMARK 465 GLN B 303 REMARK 465 VAL B 304 REMARK 465 ILE B 305 REMARK 465 PHE B 306 REMARK 465 TYR B 307 REMARK 465 PRO B 308 REMARK 465 GLU B 309 REMARK 465 GLY B 310 REMARK 465 LYS B 311 REMARK 465 ARG B 312 REMARK 465 LEU B 313 REMARK 465 GLU B 314 REMARK 465 THR B 315 REMARK 465 LYS B 316 REMARK 465 SER B 317 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 ASP C 2 REMARK 465 ILE C 3 REMARK 465 ILE C 4 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 ALA C 7 REMARK 465 ASP C 8 REMARK 465 SER C 9 REMARK 465 PRO C 10 REMARK 465 SER C 38 REMARK 465 ASN C 39 REMARK 465 VAL C 40 REMARK 465 VAL C 41 REMARK 465 LEU C 42 REMARK 465 GLU C 43 REMARK 465 HIS C 44 REMARK 465 HIS C 45 REMARK 465 HIS C 46 REMARK 465 HIS C 47 REMARK 465 HIS C 48 REMARK 465 HIS C 49 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 77 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 119 -167.60 -128.47 REMARK 500 ALA A 198 21.59 -140.19 REMARK 500 VAL B 42 -64.66 -104.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ACW RELATED DB: PDB REMARK 900 LID/HID COMPLEX REMARK 900 RELATED ID: 7ACX RELATED DB: PDB REMARK 900 SLPH/SLPL COMPLEX (R7404 STRAIN) REMARK 900 RELATED ID: 7ACY RELATED DB: PDB REMARK 900 SLPH/SLPL COMPLEX (CD630 STRAIN) REMARK 900 RELATED ID: 7ACZ RELATED DB: PDB REMARK 900 SLPH/SLPLDELTAD2 COMPLEX (R20291 STRAIN) DBREF 7ACV A 0 317 UNP Q9AEM2 Q9AEM2_CLODI 24 341 DBREF 7ACV B 0 317 UNP Q9AEM2 Q9AEM2_CLODI 24 341 DBREF 7ACV C 1 41 UNP Q9AEM2 Q9AEM2_CLODI 342 382 SEQADV 7ACV MET A -1 UNP Q9AEM2 INITIATING METHIONINE SEQADV 7ACV MET B -1 UNP Q9AEM2 INITIATING METHIONINE SEQADV 7ACV MET C 0 UNP Q9AEM2 INITIATING METHIONINE SEQADV 7ACV LEU C 42 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV GLU C 43 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 44 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 45 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 46 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 47 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 48 UNP Q9AEM2 EXPRESSION TAG SEQADV 7ACV HIS C 49 UNP Q9AEM2 EXPRESSION TAG SEQRES 1 A 319 MET ALA ASP SER THR THR PRO GLY TYR THR VAL VAL LYS SEQRES 2 A 319 ASN ASP TRP LYS LYS ALA VAL LYS GLN LEU GLN ASP GLY SEQRES 3 A 319 LEU LYS ASN LYS THR ILE SER THR ILE LYS VAL SER PHE SEQRES 4 A 319 ASN GLY ASN SER VAL GLY GLU VAL THR PRO ALA SER SER SEQRES 5 A 319 GLY ALA LYS LYS ALA ASP ARG ASP ALA ALA ALA GLU LYS SEQRES 6 A 319 LEU TYR ASN LEU VAL ASN THR GLN LEU ASP LYS LEU GLY SEQRES 7 A 319 ASP GLY ASP TYR VAL ASP PHE GLU VAL THR TYR ASN LEU SEQRES 8 A 319 ALA THR GLN ILE ILE THR LYS ALA GLU ALA GLU ALA VAL SEQRES 9 A 319 LEU THR LYS LEU GLN GLN TYR ASN ASP LYS VAL LEU ILE SEQRES 10 A 319 ASN SER ALA THR ASP THR VAL LYS GLY MET VAL SER ASP SEQRES 11 A 319 THR GLN VAL ASP SER LYS ASN VAL ALA ALA ASN PRO LEU SEQRES 12 A 319 LYS VAL SER ASP MET TYR THR ILE PRO SER ALA ILE THR SEQRES 13 A 319 GLY SER ASP ASP SER GLY TYR SER ILE ALA LYS PRO THR SEQRES 14 A 319 GLU LYS THR THR SER LEU LEU TYR GLY THR VAL GLY ASP SEQRES 15 A 319 ALA THR ALA GLY LYS ALA ILE THR VAL ASP THR ALA SER SEQRES 16 A 319 ASN GLU ALA PHE ALA GLY ASN GLY LYS VAL ILE ASP TYR SEQRES 17 A 319 ASN LYS SER PHE LYS ALA THR VAL GLN GLY ASP GLY THR SEQRES 18 A 319 VAL LYS THR SER GLY VAL VAL LEU LYS ASP ALA SER ASP SEQRES 19 A 319 MET ALA ALA THR GLY THR ILE LYS VAL ARG VAL THR SER SEQRES 20 A 319 ALA LYS GLU GLU SER ILE ASP VAL ASP SER SER SER TYR SEQRES 21 A 319 ILE SER ALA GLU ASN LEU ALA LYS LYS TYR VAL PHE ASN SEQRES 22 A 319 PRO LYS GLU VAL SER GLU ALA TYR ASN ALA ILE VAL ALA SEQRES 23 A 319 LEU GLN ASN ASP GLY ILE GLU SER ASP LEU VAL GLN LEU SEQRES 24 A 319 VAL ASN GLY LYS TYR GLN VAL ILE PHE TYR PRO GLU GLY SEQRES 25 A 319 LYS ARG LEU GLU THR LYS SER SEQRES 1 B 319 MET ALA ASP SER THR THR PRO GLY TYR THR VAL VAL LYS SEQRES 2 B 319 ASN ASP TRP LYS LYS ALA VAL LYS GLN LEU GLN ASP GLY SEQRES 3 B 319 LEU LYS ASN LYS THR ILE SER THR ILE LYS VAL SER PHE SEQRES 4 B 319 ASN GLY ASN SER VAL GLY GLU VAL THR PRO ALA SER SER SEQRES 5 B 319 GLY ALA LYS LYS ALA ASP ARG ASP ALA ALA ALA GLU LYS SEQRES 6 B 319 LEU TYR ASN LEU VAL ASN THR GLN LEU ASP LYS LEU GLY SEQRES 7 B 319 ASP GLY ASP TYR VAL ASP PHE GLU VAL THR TYR ASN LEU SEQRES 8 B 319 ALA THR GLN ILE ILE THR LYS ALA GLU ALA GLU ALA VAL SEQRES 9 B 319 LEU THR LYS LEU GLN GLN TYR ASN ASP LYS VAL LEU ILE SEQRES 10 B 319 ASN SER ALA THR ASP THR VAL LYS GLY MET VAL SER ASP SEQRES 11 B 319 THR GLN VAL ASP SER LYS ASN VAL ALA ALA ASN PRO LEU SEQRES 12 B 319 LYS VAL SER ASP MET TYR THR ILE PRO SER ALA ILE THR SEQRES 13 B 319 GLY SER ASP ASP SER GLY TYR SER ILE ALA LYS PRO THR SEQRES 14 B 319 GLU LYS THR THR SER LEU LEU TYR GLY THR VAL GLY ASP SEQRES 15 B 319 ALA THR ALA GLY LYS ALA ILE THR VAL ASP THR ALA SER SEQRES 16 B 319 ASN GLU ALA PHE ALA GLY ASN GLY LYS VAL ILE ASP TYR SEQRES 17 B 319 ASN LYS SER PHE LYS ALA THR VAL GLN GLY ASP GLY THR SEQRES 18 B 319 VAL LYS THR SER GLY VAL VAL LEU LYS ASP ALA SER ASP SEQRES 19 B 319 MET ALA ALA THR GLY THR ILE LYS VAL ARG VAL THR SER SEQRES 20 B 319 ALA LYS GLU GLU SER ILE ASP VAL ASP SER SER SER TYR SEQRES 21 B 319 ILE SER ALA GLU ASN LEU ALA LYS LYS TYR VAL PHE ASN SEQRES 22 B 319 PRO LYS GLU VAL SER GLU ALA TYR ASN ALA ILE VAL ALA SEQRES 23 B 319 LEU GLN ASN ASP GLY ILE GLU SER ASP LEU VAL GLN LEU SEQRES 24 B 319 VAL ASN GLY LYS TYR GLN VAL ILE PHE TYR PRO GLU GLY SEQRES 25 B 319 LYS ARG LEU GLU THR LYS SER SEQRES 1 C 50 MET ALA ASP ILE ILE ALA ASP ALA ASP SER PRO ALA LYS SEQRES 2 C 50 ILE THR ILE LYS ALA ASN LYS LEU LYS ASP LEU LYS ASP SEQRES 3 C 50 TYR VAL ASP ASP LEU LYS THR TYR ASN ASN THR TYR SER SEQRES 4 C 50 ASN VAL VAL LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *166(H2 O) HELIX 1 AA1 ASP A 13 ASN A 27 1 15 HELIX 2 AA2 PRO A 47 ALA A 52 5 6 HELIX 3 AA3 LYS A 53 LYS A 74 1 22 HELIX 4 AA4 ALA A 90 GLN A 92 5 3 HELIX 5 AA5 THR A 95 GLN A 108 1 14 HELIX 6 AA6 VAL A 143 MET A 146 1 4 HELIX 7 AA7 ALA A 246 GLU A 248 5 3 HELIX 8 AA8 SER A 260 LYS A 267 1 8 HELIX 9 AA9 ASN A 271 GLY A 289 1 19 HELIX 10 AB1 ASP B 13 ASN B 27 1 15 HELIX 11 AB2 PRO B 47 ALA B 52 5 6 HELIX 12 AB3 LYS B 53 LYS B 74 1 22 HELIX 13 AB4 ALA B 90 GLN B 92 5 3 HELIX 14 AB5 THR B 95 THR B 104 1 10 HELIX 15 AB6 LYS C 19 THR C 36 1 18 SHEET 1 AA1 5 THR A 8 VAL A 10 0 SHEET 2 AA1 5 THR A 236 THR A 244 1 O ARG A 242 N VAL A 9 SHEET 3 AA1 5 TYR A 80 ASN A 88 -1 N VAL A 85 O ILE A 239 SHEET 4 AA1 5 ILE A 30 PHE A 37 -1 N LYS A 34 O GLU A 84 SHEET 5 AA1 5 ASN A 40 VAL A 45 -1 O VAL A 45 N ILE A 33 SHEET 1 AA2 2 VAL A 113 ILE A 115 0 SHEET 2 AA2 2 LEU A 141 LYS A 142 -1 O LEU A 141 N LEU A 114 SHEET 1 AA3 2 GLY A 124 VAL A 126 0 SHEET 2 AA3 2 LEU A 174 GLY A 176 -1 O LEU A 174 N VAL A 126 SHEET 1 AA4 2 TYR A 147 THR A 148 0 SHEET 2 AA4 2 THR A 167 GLU A 168 -1 O THR A 167 N THR A 148 SHEET 1 AA5 2 THR A 154 SER A 156 0 SHEET 2 AA5 2 GLY A 160 SER A 162 -1 O SER A 162 N THR A 154 SHEET 1 AA6 3 ILE A 187 VAL A 189 0 SHEET 2 AA6 3 VAL A 220 THR A 222 1 O VAL A 220 N THR A 188 SHEET 3 AA6 3 ALA A 212 VAL A 214 -1 N THR A 213 O LYS A 221 SHEET 1 AA7 2 LYS A 202 ILE A 204 0 SHEET 2 AA7 2 LEU A 227 ASP A 229 -1 O LYS A 228 N VAL A 203 SHEET 1 AA8 4 SER A 250 ASP A 252 0 SHEET 2 AA8 4 ILE C 13 ALA C 17 1 O THR C 14 N ILE A 251 SHEET 3 AA8 4 LYS A 301 PHE A 306 -1 N TYR A 302 O ALA C 17 SHEET 4 AA8 4 GLN A 296 VAL A 298 -1 N VAL A 298 O LYS A 301 SHEET 1 AA9 2 TYR A 268 VAL A 269 0 SHEET 2 AA9 2 GLY A 310 LYS A 311 -1 O GLY A 310 N VAL A 269 SHEET 1 AB1 5 THR B 8 VAL B 10 0 SHEET 2 AB1 5 THR B 236 THR B 244 1 O ARG B 242 N VAL B 9 SHEET 3 AB1 5 TYR B 80 ASN B 88 -1 N VAL B 85 O ILE B 239 SHEET 4 AB1 5 ILE B 30 PHE B 37 -1 N LYS B 34 O GLU B 84 SHEET 5 AB1 5 ASN B 40 VAL B 45 -1 O ASN B 40 N PHE B 37 CRYST1 172.870 29.446 144.329 90.00 94.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005785 0.000000 0.000427 0.00000 SCALE2 0.000000 0.033960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006947 0.00000