HEADER STRUCTURAL PROTEIN 11-SEP-20 7ACY TITLE H/L (SLPH/SLPL) COMPLEX FROM C. DIFFICILE (CD630 STRAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-LAYER PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S-LAYER PROTEIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE (STRAIN 630); SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE (STRAIN 630); SOURCE 7 ORGANISM_TAXID: 272563; SOURCE 8 STRAIN: 630 KEYWDS BACTERIAL SURFACE, S-LAYER, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LANZONI-MANGUTCHI,A.BARWINSKA-SENDRA,P.S.SALGADO REVDAT 2 31-JAN-24 7ACY 1 REMARK REVDAT 1 09-MAR-22 7ACY 0 JRNL AUTH P.LANZONI-MANGUTCHI,O.BANERJI,J.WILSON,A.BARWINSKA-SENDRA, JRNL AUTH 2 J.A.KIRK,F.VAZ,S.O'BEIRNE,A.BASLE,K.EL OMARI,A.WAGNER, JRNL AUTH 3 N.F.FAIRWEATHER,G.R.DOUCE,P.A.BULLOUGH,R.P.FAGAN,P.S.SALGADO JRNL TITL STRUCTURE AND ASSEMBLY OF THE S-LAYER IN C. DIFFICILE. JRNL REF NAT COMMUN V. 13 970 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35217634 JRNL DOI 10.1038/S41467-022-28196-W REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 44767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3349 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.68000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.54000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.332 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.353 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.843 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10416 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 9890 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14092 ; 0.916 ; 1.909 REMARK 3 BOND ANGLES OTHERS (DEGREES): 23094 ; 0.917 ; 2.932 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1378 ; 4.699 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 420 ;34.645 ;27.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1900 ;12.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1696 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11644 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1746 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5524 ; 1.005 ; 3.030 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 5523 ; 1.005 ; 3.030 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6898 ; 1.788 ; 4.542 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 6899 ; 1.788 ; 4.543 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4892 ; 0.808 ; 3.111 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4880 ; 0.796 ; 3.088 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 7176 ; 1.415 ; 4.593 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11150 ; 3.531 ;36.344 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11146 ; 3.530 ;36.333 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6860 -2.1320 47.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.6520 T22: 0.3277 REMARK 3 T33: 0.1794 T12: -0.1232 REMARK 3 T13: -0.2297 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 0.4061 L22: 0.2171 REMARK 3 L33: 1.0013 L12: 0.0542 REMARK 3 L13: -0.3574 L23: -0.3339 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0360 S13: -0.1422 REMARK 3 S21: 0.1457 S22: -0.0329 S23: 0.0144 REMARK 3 S31: -0.1894 S32: -0.2333 S33: 0.0520 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 374 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3990 39.5240 24.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.5007 T22: 0.0763 REMARK 3 T33: 0.1222 T12: -0.1571 REMARK 3 T13: -0.1968 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 1.2978 L22: 1.8616 REMARK 3 L33: 0.8800 L12: 0.7929 REMARK 3 L13: 0.3604 L23: -0.3330 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.1243 S13: 0.1117 REMARK 3 S21: 0.0276 S22: -0.0433 S23: -0.0778 REMARK 3 S31: 0.0687 S32: 0.0597 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 318 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6370 83.1280 -11.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.5518 T22: 0.4308 REMARK 3 T33: 0.1188 T12: -0.1041 REMARK 3 T13: -0.2498 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 0.6101 L22: 0.4376 REMARK 3 L33: 0.4550 L12: -0.2616 REMARK 3 L13: 0.3328 L23: -0.2856 REMARK 3 S TENSOR REMARK 3 S11: -0.0912 S12: -0.1360 S13: 0.0979 REMARK 3 S21: -0.0757 S22: 0.0442 S23: 0.0108 REMARK 3 S31: -0.0546 S32: -0.3278 S33: 0.0469 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 374 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9930 21.1380 -8.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.4447 T22: 0.1127 REMARK 3 T33: 0.1279 T12: -0.2093 REMARK 3 T13: -0.2028 T23: 0.1097 REMARK 3 L TENSOR REMARK 3 L11: 0.2563 L22: 2.0162 REMARK 3 L33: 0.5152 L12: 0.3425 REMARK 3 L13: -0.0580 L23: -0.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: 0.0194 S13: -0.0184 REMARK 3 S21: 0.0328 S22: 0.0769 S23: 0.0765 REMARK 3 S31: -0.0544 S32: 0.0759 S33: 0.0046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7ACY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 52.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CVZ, 5J6Q, D_129211090/992/994 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.2 1.25 LITHIUM CHLORIDE REMARK 280 16% PEG 6000 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 3 O ILE B 5 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 -134.22 47.94 REMARK 500 ASN A 88 94.59 -162.02 REMARK 500 ASP A 132 -179.96 -69.89 REMARK 500 LYS B 320 -124.31 40.92 REMARK 500 ALA B 329 117.68 -164.75 REMARK 500 ASN C 39 -134.00 47.91 REMARK 500 ASN C 88 94.62 -162.41 REMARK 500 LYS D 320 -125.56 41.64 REMARK 500 ALA D 329 117.45 -164.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ACW RELATED DB: PDB REMARK 900 LID/HID COMPLEX REMARK 900 RELATED ID: 7ACV RELATED DB: PDB REMARK 900 LMW/HID COMPLEX REMARK 900 RELATED ID: 7ACZ RELATED DB: PDB REMARK 900 SLPH/SLPLDELTAD2 COMPLEX (R20291 STRAIN) REMARK 900 RELATED ID: 7ACX RELATED DB: PDB REMARK 900 SLPH/SLPL COMPLEX (R7404 STRAIN) DBREF 7ACY A 1 318 UNP Q183M8 Q183M8_CLOD6 25 342 DBREF 7ACY B 2 374 UNP Q183M8 Q183M8_CLOD6 347 719 DBREF 7ACY C 1 318 UNP Q183M8 Q183M8_CLOD6 25 342 DBREF 7ACY D 2 374 UNP Q183M8 Q183M8_CLOD6 347 719 SEQRES 1 A 318 ALA THR THR GLY THR GLN GLY TYR THR VAL VAL LYS ASN SEQRES 2 A 318 ASP TRP LYS LYS ALA VAL LYS GLN LEU GLN ASP GLY LEU SEQRES 3 A 318 LYS ASP ASN SER ILE GLY LYS ILE THR VAL SER PHE ASN SEQRES 4 A 318 ASP GLY VAL VAL GLY GLU VAL ALA PRO LYS SER ALA ASN SEQRES 5 A 318 LYS LYS ALA ASP ARG ASP ALA ALA ALA GLU LYS LEU TYR SEQRES 6 A 318 ASN LEU VAL ASN THR GLN LEU ASP LYS LEU GLY ASP GLY SEQRES 7 A 318 ASP TYR VAL ASP PHE SER VAL ASP TYR ASN LEU GLU ASN SEQRES 8 A 318 LYS ILE ILE THR ASN GLN ALA ASP ALA GLU ALA ILE VAL SEQRES 9 A 318 THR LYS LEU ASN SER LEU ASN GLU LYS THR LEU ILE ASP SEQRES 10 A 318 ILE ALA THR LYS ASP THR PHE GLY MET VAL SER LYS THR SEQRES 11 A 318 GLN ASP SER GLU GLY LYS ASN VAL ALA ALA THR LYS ALA SEQRES 12 A 318 LEU LYS VAL LYS ASP VAL ALA THR PHE GLY LEU LYS SER SEQRES 13 A 318 GLY GLY SER GLU ASP THR GLY TYR VAL VAL GLU MET LYS SEQRES 14 A 318 ALA GLY ALA VAL GLU ASP LYS TYR GLY LYS VAL GLY ASP SEQRES 15 A 318 SER THR ALA GLY ILE ALA ILE ASN LEU PRO SER THR GLY SEQRES 16 A 318 LEU GLU TYR ALA GLY LYS GLY THR THR ILE ASP PHE ASN SEQRES 17 A 318 LYS THR LEU LYS VAL ASP VAL THR GLY GLY SER THR PRO SEQRES 18 A 318 SER ALA VAL ALA VAL SER GLY PHE VAL THR LYS ASP ASP SEQRES 19 A 318 THR ASP LEU ALA LYS SER GLY THR ILE ASN VAL ARG VAL SEQRES 20 A 318 ILE ASN ALA LYS GLU GLU SER ILE ASP ILE ASP ALA SER SEQRES 21 A 318 SER TYR THR SER ALA GLU ASN LEU ALA LYS ARG TYR VAL SEQRES 22 A 318 PHE ASP PRO ASP GLU ILE SER GLU ALA TYR LYS ALA ILE SEQRES 23 A 318 VAL ALA LEU GLN ASN ASP GLY ILE GLU SER ASN LEU VAL SEQRES 24 A 318 GLN LEU VAL ASN GLY LYS TYR GLN VAL ILE PHE TYR PRO SEQRES 25 A 318 GLU GLY LYS ARG LEU GLU SEQRES 1 B 373 ASN ASP THR ILE ALA SER GLN ASP THR PRO ALA LYS VAL SEQRES 2 B 373 VAL ILE LYS ALA ASN LYS LEU LYS ASP LEU LYS ASP TYR SEQRES 3 B 373 VAL ASP ASP LEU LYS THR TYR ASN ASN THR TYR SER ASN SEQRES 4 B 373 VAL VAL THR VAL ALA GLY GLU ASP ARG ILE GLU THR ALA SEQRES 5 B 373 ILE GLU LEU SER SER LYS TYR TYR ASN SER ASP ASP LYS SEQRES 6 B 373 ASN ALA ILE THR ASP LYS ALA VAL ASN ASP ILE VAL LEU SEQRES 7 B 373 VAL GLY SER THR SER ILE VAL ASP GLY LEU VAL ALA SER SEQRES 8 B 373 PRO LEU ALA SER GLU LYS THR ALA PRO LEU LEU LEU THR SEQRES 9 B 373 SER LYS ASP LYS LEU ASP SER SER VAL LYS SER GLU ILE SEQRES 10 B 373 LYS ARG VAL MET ASN LEU LYS SER ASP THR GLY ILE ASN SEQRES 11 B 373 THR SER LYS LYS VAL TYR LEU ALA GLY GLY VAL ASN SER SEQRES 12 B 373 ILE SER LYS ASP VAL GLU ASN GLU LEU LYS ASN MET GLY SEQRES 13 B 373 LEU LYS VAL THR ARG LEU SER GLY GLU ASP ARG TYR GLU SEQRES 14 B 373 THR SER LEU ALA ILE ALA ASP GLU ILE GLY LEU ASP ASN SEQRES 15 B 373 ASP LYS ALA PHE VAL VAL GLY GLY THR GLY LEU ALA ASP SEQRES 16 B 373 ALA MET SER ILE ALA PRO VAL ALA SER GLN LEU LYS ASP SEQRES 17 B 373 GLY ASP ALA THR PRO ILE VAL VAL VAL ASP GLY LYS ALA SEQRES 18 B 373 LYS GLU ILE SER ASP ASP ALA LYS SER PHE LEU GLY THR SEQRES 19 B 373 SER ASP VAL ASP ILE ILE GLY GLY LYS ASN SER VAL SER SEQRES 20 B 373 LYS GLU ILE GLU GLU SER ILE ASP SER ALA THR GLY LYS SEQRES 21 B 373 THR PRO ASP ARG ILE SER GLY ASP ASP ARG GLN ALA THR SEQRES 22 B 373 ASN ALA GLU VAL LEU LYS GLU ASP ASP TYR PHE THR ASP SEQRES 23 B 373 GLY GLU VAL VAL ASN TYR PHE VAL ALA LYS ASP GLY SER SEQRES 24 B 373 THR LYS GLU ASP GLN LEU VAL ASP ALA LEU ALA ALA ALA SEQRES 25 B 373 PRO ILE ALA GLY ARG PHE LYS GLU SER PRO ALA PRO ILE SEQRES 26 B 373 ILE LEU ALA THR ASP THR LEU SER SER ASP GLN ASN VAL SEQRES 27 B 373 ALA VAL SER LYS ALA VAL PRO LYS ASP GLY GLY THR ASN SEQRES 28 B 373 LEU VAL GLN VAL GLY LYS GLY ILE ALA SER SER VAL ILE SEQRES 29 B 373 ASN LYS MET LYS ASP LEU LEU ASP MET SEQRES 1 C 318 ALA THR THR GLY THR GLN GLY TYR THR VAL VAL LYS ASN SEQRES 2 C 318 ASP TRP LYS LYS ALA VAL LYS GLN LEU GLN ASP GLY LEU SEQRES 3 C 318 LYS ASP ASN SER ILE GLY LYS ILE THR VAL SER PHE ASN SEQRES 4 C 318 ASP GLY VAL VAL GLY GLU VAL ALA PRO LYS SER ALA ASN SEQRES 5 C 318 LYS LYS ALA ASP ARG ASP ALA ALA ALA GLU LYS LEU TYR SEQRES 6 C 318 ASN LEU VAL ASN THR GLN LEU ASP LYS LEU GLY ASP GLY SEQRES 7 C 318 ASP TYR VAL ASP PHE SER VAL ASP TYR ASN LEU GLU ASN SEQRES 8 C 318 LYS ILE ILE THR ASN GLN ALA ASP ALA GLU ALA ILE VAL SEQRES 9 C 318 THR LYS LEU ASN SER LEU ASN GLU LYS THR LEU ILE ASP SEQRES 10 C 318 ILE ALA THR LYS ASP THR PHE GLY MET VAL SER LYS THR SEQRES 11 C 318 GLN ASP SER GLU GLY LYS ASN VAL ALA ALA THR LYS ALA SEQRES 12 C 318 LEU LYS VAL LYS ASP VAL ALA THR PHE GLY LEU LYS SER SEQRES 13 C 318 GLY GLY SER GLU ASP THR GLY TYR VAL VAL GLU MET LYS SEQRES 14 C 318 ALA GLY ALA VAL GLU ASP LYS TYR GLY LYS VAL GLY ASP SEQRES 15 C 318 SER THR ALA GLY ILE ALA ILE ASN LEU PRO SER THR GLY SEQRES 16 C 318 LEU GLU TYR ALA GLY LYS GLY THR THR ILE ASP PHE ASN SEQRES 17 C 318 LYS THR LEU LYS VAL ASP VAL THR GLY GLY SER THR PRO SEQRES 18 C 318 SER ALA VAL ALA VAL SER GLY PHE VAL THR LYS ASP ASP SEQRES 19 C 318 THR ASP LEU ALA LYS SER GLY THR ILE ASN VAL ARG VAL SEQRES 20 C 318 ILE ASN ALA LYS GLU GLU SER ILE ASP ILE ASP ALA SER SEQRES 21 C 318 SER TYR THR SER ALA GLU ASN LEU ALA LYS ARG TYR VAL SEQRES 22 C 318 PHE ASP PRO ASP GLU ILE SER GLU ALA TYR LYS ALA ILE SEQRES 23 C 318 VAL ALA LEU GLN ASN ASP GLY ILE GLU SER ASN LEU VAL SEQRES 24 C 318 GLN LEU VAL ASN GLY LYS TYR GLN VAL ILE PHE TYR PRO SEQRES 25 C 318 GLU GLY LYS ARG LEU GLU SEQRES 1 D 373 ASN ASP THR ILE ALA SER GLN ASP THR PRO ALA LYS VAL SEQRES 2 D 373 VAL ILE LYS ALA ASN LYS LEU LYS ASP LEU LYS ASP TYR SEQRES 3 D 373 VAL ASP ASP LEU LYS THR TYR ASN ASN THR TYR SER ASN SEQRES 4 D 373 VAL VAL THR VAL ALA GLY GLU ASP ARG ILE GLU THR ALA SEQRES 5 D 373 ILE GLU LEU SER SER LYS TYR TYR ASN SER ASP ASP LYS SEQRES 6 D 373 ASN ALA ILE THR ASP LYS ALA VAL ASN ASP ILE VAL LEU SEQRES 7 D 373 VAL GLY SER THR SER ILE VAL ASP GLY LEU VAL ALA SER SEQRES 8 D 373 PRO LEU ALA SER GLU LYS THR ALA PRO LEU LEU LEU THR SEQRES 9 D 373 SER LYS ASP LYS LEU ASP SER SER VAL LYS SER GLU ILE SEQRES 10 D 373 LYS ARG VAL MET ASN LEU LYS SER ASP THR GLY ILE ASN SEQRES 11 D 373 THR SER LYS LYS VAL TYR LEU ALA GLY GLY VAL ASN SER SEQRES 12 D 373 ILE SER LYS ASP VAL GLU ASN GLU LEU LYS ASN MET GLY SEQRES 13 D 373 LEU LYS VAL THR ARG LEU SER GLY GLU ASP ARG TYR GLU SEQRES 14 D 373 THR SER LEU ALA ILE ALA ASP GLU ILE GLY LEU ASP ASN SEQRES 15 D 373 ASP LYS ALA PHE VAL VAL GLY GLY THR GLY LEU ALA ASP SEQRES 16 D 373 ALA MET SER ILE ALA PRO VAL ALA SER GLN LEU LYS ASP SEQRES 17 D 373 GLY ASP ALA THR PRO ILE VAL VAL VAL ASP GLY LYS ALA SEQRES 18 D 373 LYS GLU ILE SER ASP ASP ALA LYS SER PHE LEU GLY THR SEQRES 19 D 373 SER ASP VAL ASP ILE ILE GLY GLY LYS ASN SER VAL SER SEQRES 20 D 373 LYS GLU ILE GLU GLU SER ILE ASP SER ALA THR GLY LYS SEQRES 21 D 373 THR PRO ASP ARG ILE SER GLY ASP ASP ARG GLN ALA THR SEQRES 22 D 373 ASN ALA GLU VAL LEU LYS GLU ASP ASP TYR PHE THR ASP SEQRES 23 D 373 GLY GLU VAL VAL ASN TYR PHE VAL ALA LYS ASP GLY SER SEQRES 24 D 373 THR LYS GLU ASP GLN LEU VAL ASP ALA LEU ALA ALA ALA SEQRES 25 D 373 PRO ILE ALA GLY ARG PHE LYS GLU SER PRO ALA PRO ILE SEQRES 26 D 373 ILE LEU ALA THR ASP THR LEU SER SER ASP GLN ASN VAL SEQRES 27 D 373 ALA VAL SER LYS ALA VAL PRO LYS ASP GLY GLY THR ASN SEQRES 28 D 373 LEU VAL GLN VAL GLY LYS GLY ILE ALA SER SER VAL ILE SEQRES 29 D 373 ASN LYS MET LYS ASP LEU LEU ASP MET HET SO4 A 401 5 HET SO4 B 401 5 HET SO4 C 401 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *97(H2 O) HELIX 1 AA1 ASP A 14 ASP A 28 1 15 HELIX 2 AA2 LYS A 53 LYS A 74 1 22 HELIX 3 AA3 GLU A 90 LYS A 92 5 3 HELIX 4 AA4 ASN A 96 SER A 109 1 14 HELIX 5 AA5 VAL A 146 VAL A 149 1 4 HELIX 6 AA6 SER A 264 ARG A 271 1 8 HELIX 7 AA7 ASP A 275 ASP A 292 1 18 HELIX 8 AA8 LYS B 20 ASN B 40 1 21 HELIX 9 AA9 ASP B 48 TYR B 61 1 14 HELIX 10 AB1 ALA B 91 LYS B 98 1 8 HELIX 11 AB2 ASP B 111 ASN B 123 1 13 HELIX 12 AB3 SER B 146 MET B 156 1 11 HELIX 13 AB4 ASP B 167 GLY B 180 1 14 HELIX 14 AB5 GLY B 193 SER B 205 1 13 HELIX 15 AB6 SER B 226 GLY B 234 1 9 HELIX 16 AB7 SER B 248 GLY B 260 1 13 HELIX 17 AB8 ASP B 270 GLU B 281 1 12 HELIX 18 AB9 LYS B 302 GLN B 305 5 4 HELIX 19 AC1 LEU B 306 PHE B 319 1 14 HELIX 20 AC2 SER B 334 VAL B 345 1 12 HELIX 21 AC3 ALA B 361 LEU B 372 1 12 HELIX 22 AC4 ASP C 14 ASP C 28 1 15 HELIX 23 AC5 LYS C 53 LYS C 74 1 22 HELIX 24 AC6 GLU C 90 LYS C 92 5 3 HELIX 25 AC7 ASN C 96 SER C 109 1 14 HELIX 26 AC8 VAL C 146 VAL C 149 1 4 HELIX 27 AC9 SER C 264 ARG C 271 1 8 HELIX 28 AD1 ASP C 275 GLY C 293 1 19 HELIX 29 AD2 LYS D 20 ASN D 40 1 21 HELIX 30 AD3 ASP D 48 TYR D 61 1 14 HELIX 31 AD4 ALA D 91 LYS D 98 1 8 HELIX 32 AD5 ASP D 111 ASN D 123 1 13 HELIX 33 AD6 SER D 146 MET D 156 1 11 HELIX 34 AD7 ASP D 167 GLY D 180 1 14 HELIX 35 AD8 GLY D 193 SER D 205 1 13 HELIX 36 AD9 SER D 226 GLY D 234 1 9 HELIX 37 AE1 SER D 248 GLY D 260 1 13 HELIX 38 AE2 ASP D 270 GLU D 281 1 12 HELIX 39 AE3 LYS D 302 GLN D 305 5 4 HELIX 40 AE4 LEU D 306 PHE D 319 1 14 HELIX 41 AE5 SER D 334 VAL D 345 1 12 HELIX 42 AE6 ALA D 361 LEU D 372 1 12 SHEET 1 AA1 5 TYR A 8 VAL A 11 0 SHEET 2 AA1 5 SER A 240 ILE A 248 1 O ARG A 246 N VAL A 10 SHEET 3 AA1 5 TYR A 80 ASN A 88 -1 N VAL A 85 O ILE A 243 SHEET 4 AA1 5 ILE A 31 PHE A 38 -1 N THR A 35 O SER A 84 SHEET 5 AA1 5 GLY A 41 VAL A 46 -1 O VAL A 46 N ILE A 34 SHEET 1 AA2 2 THR A 114 ILE A 116 0 SHEET 2 AA2 2 LEU A 144 LYS A 145 -1 O LEU A 144 N LEU A 115 SHEET 1 AA3 2 GLY A 125 VAL A 127 0 SHEET 2 AA3 2 LYS A 176 GLY A 178 -1 O GLY A 178 N GLY A 125 SHEET 1 AA4 3 ALA A 150 LEU A 154 0 SHEET 2 AA4 3 VAL A 166 ALA A 170 -1 O GLU A 167 N GLY A 153 SHEET 3 AA4 3 GLU A 197 TYR A 198 -1 O TYR A 198 N VAL A 166 SHEET 1 AA5 3 ILE A 189 ASN A 190 0 SHEET 2 AA5 3 ALA A 223 VAL A 226 1 O VAL A 224 N ASN A 190 SHEET 3 AA5 3 VAL A 213 THR A 216 -1 N THR A 216 O ALA A 223 SHEET 1 AA6 2 THR A 203 ILE A 205 0 SHEET 2 AA6 2 THR A 231 ASP A 233 -1 O LYS A 232 N THR A 204 SHEET 1 AA7 4 LYS A 251 ASP A 256 0 SHEET 2 AA7 4 ALA B 12 ALA B 18 1 O LYS B 17 N ILE A 255 SHEET 3 AA7 4 TYR A 306 PHE A 310 -1 N PHE A 310 O VAL B 14 SHEET 4 AA7 4 GLN A 300 LEU A 301 -1 N GLN A 300 O GLN A 307 SHEET 1 AA8 2 TYR A 272 VAL A 273 0 SHEET 2 AA8 2 GLY A 314 LYS A 315 -1 O GLY A 314 N VAL A 273 SHEET 1 AA9 4 VAL B 41 VAL B 44 0 SHEET 2 AA9 4 ASN B 352 VAL B 356 1 O GLN B 355 N VAL B 44 SHEET 3 AA9 4 ASN B 292 ALA B 296 1 N VAL B 295 O VAL B 356 SHEET 4 AA9 4 ILE B 326 LEU B 328 1 O ILE B 327 N PHE B 294 SHEET 1 AB1 4 LEU B 102 THR B 105 0 SHEET 2 AB1 4 ASP B 76 GLY B 81 1 N VAL B 78 O LEU B 103 SHEET 3 AB1 4 LYS B 135 ALA B 139 1 O TYR B 137 N LEU B 79 SHEET 4 AB1 4 LYS B 159 LEU B 163 1 O LEU B 163 N LEU B 138 SHEET 1 AB2 4 ILE B 215 VAL B 218 0 SHEET 2 AB2 4 LYS B 185 GLY B 190 1 N PHE B 187 O VAL B 216 SHEET 3 AB2 4 ASP B 237 ILE B 241 1 O ILE B 241 N VAL B 188 SHEET 4 AB2 4 ASP B 264 ILE B 266 1 O ASP B 264 N ILE B 240 SHEET 1 AB3 5 TYR C 8 VAL C 11 0 SHEET 2 AB3 5 SER C 240 ILE C 248 1 O ARG C 246 N VAL C 10 SHEET 3 AB3 5 TYR C 80 ASN C 88 -1 N VAL C 85 O ILE C 243 SHEET 4 AB3 5 ILE C 31 PHE C 38 -1 N THR C 35 O SER C 84 SHEET 5 AB3 5 GLY C 41 VAL C 46 -1 O VAL C 46 N ILE C 34 SHEET 1 AB4 2 THR C 114 ILE C 116 0 SHEET 2 AB4 2 LEU C 144 LYS C 145 -1 O LEU C 144 N LEU C 115 SHEET 1 AB5 2 GLY C 125 VAL C 127 0 SHEET 2 AB5 2 LYS C 176 GLY C 178 -1 O GLY C 178 N GLY C 125 SHEET 1 AB6 3 ALA C 150 LEU C 154 0 SHEET 2 AB6 3 VAL C 166 ALA C 170 -1 O GLU C 167 N GLY C 153 SHEET 3 AB6 3 GLU C 197 TYR C 198 -1 O TYR C 198 N VAL C 166 SHEET 1 AB7 3 ILE C 189 ASN C 190 0 SHEET 2 AB7 3 ALA C 223 VAL C 226 1 O VAL C 224 N ASN C 190 SHEET 3 AB7 3 VAL C 213 THR C 216 -1 N THR C 216 O ALA C 223 SHEET 1 AB8 2 THR C 203 ILE C 205 0 SHEET 2 AB8 2 THR C 231 ASP C 233 -1 O LYS C 232 N THR C 204 SHEET 1 AB9 4 LYS C 251 ASP C 256 0 SHEET 2 AB9 4 ALA D 12 ALA D 18 1 O LYS D 17 N ILE C 255 SHEET 3 AB9 4 TYR C 306 PHE C 310 -1 N PHE C 310 O VAL D 14 SHEET 4 AB9 4 GLN C 300 LEU C 301 -1 N GLN C 300 O GLN C 307 SHEET 1 AC1 2 TYR C 272 VAL C 273 0 SHEET 2 AC1 2 GLY C 314 LYS C 315 -1 O GLY C 314 N VAL C 273 SHEET 1 AC2 4 VAL D 41 VAL D 44 0 SHEET 2 AC2 4 ASN D 352 VAL D 356 1 O GLN D 355 N VAL D 44 SHEET 3 AC2 4 ASN D 292 ALA D 296 1 N VAL D 295 O VAL D 356 SHEET 4 AC2 4 ILE D 326 LEU D 328 1 O ILE D 327 N PHE D 294 SHEET 1 AC3 4 LEU D 102 THR D 105 0 SHEET 2 AC3 4 ASP D 76 GLY D 81 1 N VAL D 78 O LEU D 103 SHEET 3 AC3 4 LYS D 135 ALA D 139 1 O TYR D 137 N LEU D 79 SHEET 4 AC3 4 LYS D 159 LEU D 163 1 O LEU D 163 N LEU D 138 SHEET 1 AC4 4 ILE D 215 VAL D 218 0 SHEET 2 AC4 4 LYS D 185 GLY D 190 1 N PHE D 187 O VAL D 216 SHEET 3 AC4 4 ASP D 237 ILE D 241 1 O ILE D 241 N VAL D 188 SHEET 4 AC4 4 ASP D 264 ILE D 266 1 O ASP D 264 N ILE D 240 SITE 1 AC1 3 TYR A 8 GLN A 21 VAL A 245 SITE 1 AC2 2 LEU B 207 ARG B 318 SITE 1 AC3 1 ILE C 243 CRYST1 72.670 78.250 81.580 81.89 66.98 65.26 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013761 -0.006341 -0.006020 0.00000 SCALE2 0.000000 0.014071 0.000380 0.00000 SCALE3 0.000000 0.000000 0.013323 0.00000