HEADER VIRAL PROTEIN 16-SEP-20 7ADV TITLE CRYSTAL STRUCTURE OF THE PROTOTYPE FOAMY VIRUS (PFV) INTASOME IN TITLE 2 COMPLEX WITH MAGNESIUM AND THE INSTI XZ447 (COMPOUND 6V) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PR125POL; COMPND 5 EC: 2.7.7.49,2.7.7.7,3.1.26.4,3.4.23.-,2.7.7.-,3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*CP*A)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*TP*GP*CP*GP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU); SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS INTEGRASE, INTASOME, PROTEIN DNA COMPLEX, INSTI, DRUG, HIV, KEYWDS 2 RETROVIRUS, INTEGRATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.E.PYE,P.CHEREPANOV REVDAT 4 31-JAN-24 7ADV 1 REMARK REVDAT 3 23-JUN-21 7ADV 1 JRNL REVDAT 2 31-MAR-21 7ADV 1 REMARK REVDAT 1 24-MAR-21 7ADV 0 JRNL AUTH S.J.SMITH,X.Z.ZHAO,D.O.PASSOS,V.E.PYE,P.CHEREPANOV, JRNL AUTH 2 D.LYUMKIS,T.R.BURKE JR.,S.H.HUGHES JRNL TITL HIV-1 INTEGRASE INHIBITORS WITH MODIFICATIONS THAT AFFECT JRNL TITL 2 THEIR POTENCIES AGAINST DRUG RESISTANT INTEGRASE MUTANTS. JRNL REF ACS INFECT DIS. V. 7 1469 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33686850 JRNL DOI 10.1021/ACSINFECDIS.0C00819 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3900 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.1600 - 6.6700 0.99 2927 142 0.1884 0.2048 REMARK 3 2 6.6700 - 5.3000 0.99 2803 131 0.1909 0.2085 REMARK 3 3 5.3000 - 4.6300 1.00 2763 155 0.1640 0.1644 REMARK 3 4 4.6300 - 4.2100 1.00 2730 158 0.1596 0.1854 REMARK 3 5 4.2100 - 3.9000 1.00 2719 154 0.1756 0.1979 REMARK 3 6 3.9000 - 3.6700 1.00 2719 148 0.1892 0.2121 REMARK 3 7 3.6700 - 3.4900 1.00 2729 138 0.1947 0.2266 REMARK 3 8 3.4900 - 3.3400 1.00 2696 155 0.1955 0.2483 REMARK 3 9 3.3400 - 3.2100 1.00 2704 137 0.1957 0.2471 REMARK 3 10 3.2100 - 3.1000 1.00 2719 136 0.2477 0.2651 REMARK 3 11 3.1000 - 3.0000 1.00 2685 133 0.2445 0.2630 REMARK 3 12 3.0000 - 2.9200 1.00 2736 116 0.2406 0.3337 REMARK 3 13 2.9200 - 2.8400 1.00 2668 156 0.2515 0.2920 REMARK 3 14 2.8400 - 2.7700 1.00 2691 149 0.2747 0.2933 REMARK 3 15 2.7700 - 2.7100 1.00 2683 143 0.3213 0.3655 REMARK 3 16 2.7100 - 2.6500 0.97 2595 151 0.3527 0.3697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.927 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5485 REMARK 3 ANGLE : 0.523 7631 REMARK 3 CHIRALITY : 0.039 841 REMARK 3 PLANARITY : 0.004 828 REMARK 3 DIHEDRAL : 17.946 2090 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ADV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110626. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45907 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 70.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.70100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4BDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35 M AMMONIUM SULFATE, 25% (V/V) REMARK 280 GLYCEROL, 4.8% (V/V) 1,6-HEXANEDIOL, 50 MM MES-NAOH, 1MM EDTA, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.47500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 79.30500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.30500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.73750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.30500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 79.30500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.21250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.30500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.73750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 79.30500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.21250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -61.47500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 CYS A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ASN A 376 REMARK 465 GLY A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 THR A 382 REMARK 465 ALA A 383 REMARK 465 THR A 384 REMARK 465 MET A 385 REMARK 465 ASP A 386 REMARK 465 HIS A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LYS A 390 REMARK 465 ASN A 391 REMARK 465 GLU A 392 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 CYS B 1 REMARK 465 ASN B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 ASP B 9 REMARK 465 ALA B 10 REMARK 465 GLU B 11 REMARK 465 LEU B 12 REMARK 465 ASP B 13 REMARK 465 GLN B 14 REMARK 465 LEU B 15 REMARK 465 LEU B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 TYR B 20 REMARK 465 ILE B 21 REMARK 465 LYS B 22 REMARK 465 GLY B 23 REMARK 465 TYR B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 GLN B 27 REMARK 465 TYR B 28 REMARK 465 THR B 29 REMARK 465 TYR B 30 REMARK 465 PHE B 31 REMARK 465 LEU B 32 REMARK 465 GLU B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 LYS B 38 REMARK 465 VAL B 39 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLY B 44 REMARK 465 VAL B 45 REMARK 465 LYS B 46 REMARK 465 ILE B 47 REMARK 465 ILE B 48 REMARK 465 PRO B 49 REMARK 465 PRO B 50 REMARK 465 GLN B 51 REMARK 465 SER B 52 REMARK 465 ASP B 53 REMARK 465 ARG B 54 REMARK 465 GLN B 55 REMARK 465 LYS B 56 REMARK 465 ILE B 57 REMARK 465 VAL B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 ALA B 61 REMARK 465 HIS B 62 REMARK 465 ASN B 63 REMARK 465 LEU B 64 REMARK 465 ALA B 65 REMARK 465 HIS B 66 REMARK 465 THR B 67 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 GLU B 70 REMARK 465 ALA B 71 REMARK 465 THR B 72 REMARK 465 LEU B 73 REMARK 465 LEU B 74 REMARK 465 LYS B 75 REMARK 465 ILE B 76 REMARK 465 ALA B 77 REMARK 465 ASN B 78 REMARK 465 LEU B 79 REMARK 465 TYR B 80 REMARK 465 TRP B 81 REMARK 465 TRP B 82 REMARK 465 PRO B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 LYS B 87 REMARK 465 ASP B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 LYS B 91 REMARK 465 GLN B 92 REMARK 465 LEU B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 CYS B 96 REMARK 465 GLN B 97 REMARK 465 GLN B 98 REMARK 465 CYS B 99 REMARK 465 LEU B 100 REMARK 465 ILE B 101 REMARK 465 THR B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 SER B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 GLY B 110 REMARK 465 PRO B 111 REMARK 465 ILE B 112 REMARK 465 LEU B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 ILE B 298 REMARK 465 ARG B 299 REMARK 465 THR B 300 REMARK 465 SER B 301 REMARK 465 LEU B 302 REMARK 465 TYR B 303 REMARK 465 HIS B 304 REMARK 465 PRO B 305 REMARK 465 SER B 306 REMARK 465 THR B 307 REMARK 465 PRO B 308 REMARK 465 PRO B 309 REMARK 465 ALA B 310 REMARK 465 SER B 311 REMARK 465 SER B 312 REMARK 465 ARG B 313 REMARK 465 SER B 314 REMARK 465 TRP B 315 REMARK 465 SER B 316 REMARK 465 PRO B 317 REMARK 465 VAL B 318 REMARK 465 VAL B 319 REMARK 465 GLY B 320 REMARK 465 GLN B 321 REMARK 465 LEU B 322 REMARK 465 VAL B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 ARG B 326 REMARK 465 VAL B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 PRO B 330 REMARK 465 ALA B 331 REMARK 465 SER B 332 REMARK 465 LEU B 333 REMARK 465 ARG B 334 REMARK 465 PRO B 335 REMARK 465 ARG B 336 REMARK 465 TRP B 337 REMARK 465 HIS B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 SER B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 LEU B 344 REMARK 465 LYS B 345 REMARK 465 VAL B 346 REMARK 465 LEU B 347 REMARK 465 ASN B 348 REMARK 465 PRO B 349 REMARK 465 ARG B 350 REMARK 465 THR B 351 REMARK 465 VAL B 352 REMARK 465 VAL B 353 REMARK 465 ILE B 354 REMARK 465 LEU B 355 REMARK 465 ASP B 356 REMARK 465 HIS B 357 REMARK 465 LEU B 358 REMARK 465 GLY B 359 REMARK 465 ASN B 360 REMARK 465 ASN B 361 REMARK 465 ARG B 362 REMARK 465 THR B 363 REMARK 465 VAL B 364 REMARK 465 SER B 365 REMARK 465 ILE B 366 REMARK 465 ASP B 367 REMARK 465 ASN B 368 REMARK 465 LEU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 THR B 372 REMARK 465 SER B 373 REMARK 465 HIS B 374 REMARK 465 GLN B 375 REMARK 465 ASN B 376 REMARK 465 GLY B 377 REMARK 465 THR B 378 REMARK 465 THR B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 THR B 382 REMARK 465 ALA B 383 REMARK 465 THR B 384 REMARK 465 MET B 385 REMARK 465 ASP B 386 REMARK 465 HIS B 387 REMARK 465 LEU B 388 REMARK 465 GLU B 389 REMARK 465 LYS B 390 REMARK 465 ASN B 391 REMARK 465 GLU B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 520 O HOH A 565 2.07 REMARK 500 O3 SO4 A 405 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 18.98 -68.15 REMARK 500 GLN A 186 41.36 -90.59 REMARK 500 THR A 240 69.52 -69.42 REMARK 500 THR A 283 32.89 -90.67 REMARK 500 ALA A 328 -70.03 -63.86 REMARK 500 ARG A 329 78.77 -116.37 REMARK 500 GLN B 186 34.48 -77.29 REMARK 500 SER B 216 -118.84 -134.61 REMARK 500 LEU B 284 7.36 59.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 NE2 REMARK 620 2 HIS A 66 ND1 106.0 REMARK 620 3 CYS A 96 SG 102.5 108.4 REMARK 620 4 CYS A 99 SG 101.2 122.0 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 ASP A 185 OD2 85.7 REMARK 620 3 R7N A 404 O23 82.7 99.6 REMARK 620 4 HOH A 534 O 92.5 97.2 162.2 REMARK 620 5 HOH A 542 O 83.3 164.4 90.0 72.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD2 REMARK 620 2 GLU A 221 OE1 103.8 REMARK 620 3 GLU A 221 OE2 80.1 63.9 REMARK 620 4 R7N A 404 O21 155.7 86.6 85.2 REMARK 620 5 R7N A 404 O23 78.7 147.8 85.4 80.9 REMARK 620 6 HOH D 203 O 84.6 112.5 162.7 111.9 99.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 128 OD1 REMARK 620 2 ASP B 185 OD1 107.4 REMARK 620 3 ASP B 185 OD2 94.8 65.9 REMARK 620 4 DA C 19 O3' 67.9 41.3 81.5 REMARK 620 N 1 2 3 DBREF 7ADV A 3 392 UNP P14350 POL_FOAMV 754 1143 DBREF 7ADV B 3 392 UNP P14350 POL_FOAMV 754 1143 DBREF 7ADV C 1 19 PDB 7ADV 7ADV 1 19 DBREF 7ADV D 1 17 PDB 7ADV 7ADV 1 17 SEQADV 7ADV GLY A -2 UNP P14350 EXPRESSION TAG SEQADV 7ADV PRO A -1 UNP P14350 EXPRESSION TAG SEQADV 7ADV GLY A 0 UNP P14350 EXPRESSION TAG SEQADV 7ADV CYS A 1 UNP P14350 EXPRESSION TAG SEQADV 7ADV ASN A 2 UNP P14350 EXPRESSION TAG SEQADV 7ADV SER A 217 UNP P14350 GLY 968 VARIANT SEQADV 7ADV GLY A 218 UNP P14350 SER 969 VARIANT SEQADV 7ADV GLY B -2 UNP P14350 EXPRESSION TAG SEQADV 7ADV PRO B -1 UNP P14350 EXPRESSION TAG SEQADV 7ADV GLY B 0 UNP P14350 EXPRESSION TAG SEQADV 7ADV CYS B 1 UNP P14350 EXPRESSION TAG SEQADV 7ADV ASN B 2 UNP P14350 EXPRESSION TAG SEQADV 7ADV SER B 217 UNP P14350 GLY 968 VARIANT SEQADV 7ADV GLY B 218 UNP P14350 SER 969 VARIANT SEQRES 1 A 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 A 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 A 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 A 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 A 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 A 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 A 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 A 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 A 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 A 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 A 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 A 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 A 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 A 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 A 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 A 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 A 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 A 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 A 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 A 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 A 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 A 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 A 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 A 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 A 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 A 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 A 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 A 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 A 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 A 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 A 395 LEU GLU LYS ASN GLU SEQRES 1 B 395 GLY PRO GLY CYS ASN THR LYS LYS PRO ASN LEU ASP ALA SEQRES 2 B 395 GLU LEU ASP GLN LEU LEU GLN GLY HIS TYR ILE LYS GLY SEQRES 3 B 395 TYR PRO LYS GLN TYR THR TYR PHE LEU GLU ASP GLY LYS SEQRES 4 B 395 VAL LYS VAL SER ARG PRO GLU GLY VAL LYS ILE ILE PRO SEQRES 5 B 395 PRO GLN SER ASP ARG GLN LYS ILE VAL LEU GLN ALA HIS SEQRES 6 B 395 ASN LEU ALA HIS THR GLY ARG GLU ALA THR LEU LEU LYS SEQRES 7 B 395 ILE ALA ASN LEU TYR TRP TRP PRO ASN MET ARG LYS ASP SEQRES 8 B 395 VAL VAL LYS GLN LEU GLY ARG CYS GLN GLN CYS LEU ILE SEQRES 9 B 395 THR ASN ALA SER ASN LYS ALA SER GLY PRO ILE LEU ARG SEQRES 10 B 395 PRO ASP ARG PRO GLN LYS PRO PHE ASP LYS PHE PHE ILE SEQRES 11 B 395 ASP TYR ILE GLY PRO LEU PRO PRO SER GLN GLY TYR LEU SEQRES 12 B 395 TYR VAL LEU VAL VAL VAL ASP GLY MET THR GLY PHE THR SEQRES 13 B 395 TRP LEU TYR PRO THR LYS ALA PRO SER THR SER ALA THR SEQRES 14 B 395 VAL LYS SER LEU ASN VAL LEU THR SER ILE ALA ILE PRO SEQRES 15 B 395 LYS VAL ILE HIS SER ASP GLN GLY ALA ALA PHE THR SER SEQRES 16 B 395 SER THR PHE ALA GLU TRP ALA LYS GLU ARG GLY ILE HIS SEQRES 17 B 395 LEU GLU PHE SER THR PRO TYR HIS PRO GLN SER SER GLY SEQRES 18 B 395 LYS VAL GLU ARG LYS ASN SER ASP ILE LYS ARG LEU LEU SEQRES 19 B 395 THR LYS LEU LEU VAL GLY ARG PRO THR LYS TRP TYR ASP SEQRES 20 B 395 LEU LEU PRO VAL VAL GLN LEU ALA LEU ASN ASN THR TYR SEQRES 21 B 395 SER PRO VAL LEU LYS TYR THR PRO HIS GLN LEU LEU PHE SEQRES 22 B 395 GLY ILE ASP SER ASN THR PRO PHE ALA ASN GLN ASP THR SEQRES 23 B 395 LEU ASP LEU THR ARG GLU GLU GLU LEU SER LEU LEU GLN SEQRES 24 B 395 GLU ILE ARG THR SER LEU TYR HIS PRO SER THR PRO PRO SEQRES 25 B 395 ALA SER SER ARG SER TRP SER PRO VAL VAL GLY GLN LEU SEQRES 26 B 395 VAL GLN GLU ARG VAL ALA ARG PRO ALA SER LEU ARG PRO SEQRES 27 B 395 ARG TRP HIS LYS PRO SER THR VAL LEU LYS VAL LEU ASN SEQRES 28 B 395 PRO ARG THR VAL VAL ILE LEU ASP HIS LEU GLY ASN ASN SEQRES 29 B 395 ARG THR VAL SER ILE ASP ASN LEU LYS PRO THR SER HIS SEQRES 30 B 395 GLN ASN GLY THR THR ASN ASP THR ALA THR MET ASP HIS SEQRES 31 B 395 LEU GLU LYS ASN GLU SEQRES 1 C 19 DA DT DT DG DT DC DA DT DG DG DA DA DT SEQRES 2 C 19 DT DT DC DG DC DA SEQRES 1 D 17 DT DG DC DG DA DA DA DT DT DC DC DA DT SEQRES 2 D 17 DG DA DC DA HET MG A 401 1 HET MG A 402 1 HET ZN A 403 1 HET R7N A 404 38 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET SO4 A 411 5 HET SO4 A 412 5 HET SO4 A 413 5 HET SO4 A 414 5 HET SO4 A 415 5 HET SO4 A 416 5 HET SO4 A 417 5 HET SO4 A 418 5 HET GOL A 419 6 HET GOL A 420 6 HET GOL A 421 6 HET GOL A 422 6 HET MG B 401 1 HET SO4 B 402 5 HET SO4 B 403 5 HET GOL B 404 6 HET GOL C 101 6 HET SO4 D 101 5 HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM R7N 4-AZANYL-~{N}-[[2,4-BIS(FLUORANYL)PHENYL]METHYL]-6-[2- HETNAM 2 R7N (2-MORPHOLIN-4-YLETHYLSULFONYL)ETHYL]-1-OXIDANYL-2- HETNAM 3 R7N OXIDANYLIDENE-1,8-NAPHTHYRIDINE-3-CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN R7N INSTI XZ447 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MG 3(MG 2+) FORMUL 7 ZN ZN 2+ FORMUL 8 R7N C24 H27 F2 N5 O6 S FORMUL 9 SO4 17(O4 S 2-) FORMUL 23 GOL 6(C3 H8 O3) FORMUL 33 HOH *160(H2 O) HELIX 1 AA1 ASP A 9 GLN A 17 1 9 HELIX 2 AA2 PRO A 50 LEU A 64 1 15 HELIX 3 AA3 GLY A 68 ASN A 78 1 11 HELIX 4 AA4 ASN A 84 GLY A 94 1 11 HELIX 5 AA5 CYS A 96 ASN A 103 1 8 HELIX 6 AA6 SER A 162 THR A 174 1 13 HELIX 7 AA7 GLY A 187 SER A 192 1 6 HELIX 8 AA8 SER A 192 ARG A 202 1 11 HELIX 9 AA9 SER A 217 LEU A 235 1 19 HELIX 10 AB1 LEU A 245 ASN A 255 1 11 HELIX 11 AB2 THR A 264 GLY A 271 1 8 HELIX 12 AB3 THR A 287 SER A 301 1 15 HELIX 13 AB4 SER B 162 THR B 174 1 13 HELIX 14 AB5 GLY B 187 SER B 192 1 6 HELIX 15 AB6 SER B 192 ARG B 202 1 11 HELIX 16 AB7 SER B 217 VAL B 236 1 20 HELIX 17 AB8 LEU B 245 ASN B 255 1 11 HELIX 18 AB9 THR B 264 GLY B 271 1 8 HELIX 19 AC1 THR B 287 GLN B 296 1 10 SHEET 1 AA1 3 TYR A 30 GLU A 33 0 SHEET 2 AA1 3 LYS A 36 ARG A 41 -1 O LYS A 38 N PHE A 31 SHEET 3 AA1 3 GLY A 44 ILE A 47 -1 O LYS A 46 N VAL A 39 SHEET 1 AA2 2 ALA A 108 SER A 109 0 SHEET 2 AA2 2 SER A 314 TRP A 315 1 O TRP A 315 N ALA A 108 SHEET 1 AA3 5 THR A 153 THR A 158 0 SHEET 2 AA3 5 TYR A 141 ASP A 147 -1 N LEU A 143 O TYR A 156 SHEET 3 AA3 5 LYS A 124 ILE A 130 -1 N PHE A 126 O VAL A 146 SHEET 4 AA3 5 VAL A 181 SER A 184 1 O HIS A 183 N PHE A 125 SHEET 5 AA3 5 HIS A 205 PHE A 208 1 O GLU A 207 N ILE A 182 SHEET 1 AA4 5 ASN A 361 SER A 365 0 SHEET 2 AA4 5 THR A 351 LEU A 355 -1 N ILE A 354 O ARG A 362 SHEET 3 AA4 5 SER A 341 ASN A 348 -1 N LEU A 344 O VAL A 353 SHEET 4 AA4 5 LEU A 322 GLU A 325 -1 N VAL A 323 O SER A 341 SHEET 5 AA4 5 LEU A 369 PRO A 371 -1 O LYS A 370 N GLN A 324 SHEET 1 AA5 5 THR B 153 THR B 158 0 SHEET 2 AA5 5 TYR B 141 ASP B 147 -1 N LEU B 143 O TYR B 156 SHEET 3 AA5 5 LYS B 124 ILE B 130 -1 N ASP B 128 O VAL B 144 SHEET 4 AA5 5 VAL B 181 SER B 184 1 O HIS B 183 N PHE B 125 SHEET 5 AA5 5 HIS B 205 PHE B 208 1 O HIS B 205 N ILE B 182 LINK NE2 HIS A 62 ZN ZN A 403 1555 1555 2.01 LINK ND1 HIS A 66 ZN ZN A 403 1555 1555 2.02 LINK SG CYS A 96 ZN ZN A 403 1555 1555 2.22 LINK SG CYS A 99 ZN ZN A 403 1555 1555 2.22 LINK OD1 ASP A 128 MG MG A 401 1555 1555 2.14 LINK OD2 ASP A 128 MG MG A 402 1555 1555 2.03 LINK OD2 ASP A 185 MG MG A 401 1555 1555 2.08 LINK OE1 GLU A 221 MG MG A 402 1555 1555 2.06 LINK OE2 GLU A 221 MG MG A 402 1555 1555 2.08 LINK MG MG A 401 O23 R7N A 404 1555 1555 2.17 LINK MG MG A 401 O HOH A 534 1555 1555 2.15 LINK MG MG A 401 O HOH A 542 1555 1555 2.08 LINK MG MG A 402 O21 R7N A 404 1555 1555 2.03 LINK MG MG A 402 O23 R7N A 404 1555 1555 2.01 LINK MG MG A 402 O HOH D 203 1555 1555 2.02 LINK OD1 ASP B 128 MG MG B 401 1555 1555 2.14 LINK OD1 ASP B 185 MG MG B 401 1555 1555 2.02 LINK OD2 ASP B 185 MG MG B 401 1555 1555 2.02 LINK MG MG B 401 O3' DA C 19 4454 1555 2.40 CISPEP 1 GLY A 131 PRO A 132 0 3.85 CISPEP 2 GLY B 131 PRO B 132 0 2.46 CRYST1 158.610 158.610 122.950 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008133 0.00000